RNA–Protein interactions for RNA: ENST00000626000.1

SNRPA1-216, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 5 BASIC

Gene SNRPA1, Length 539 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-216ENST00000626000 A0A087WZG4 1122 aa18.3■□□□□ 0.52
SNRPA1-216ENST00000626000 PTGER2P43116 358 aa18.3■□□□□ 0.52
SNRPA1-216ENST00000626000 CCDC184Q52MB2 194 aa18.3■□□□□ 0.52
SNRPA1-216ENST00000626000 INTS5Q6P9B9 1019 aaKnown RBP18.3■□□□□ 0.52
SNRPA1-216ENST00000626000 NLGN1Q8N2Q7 840 aa18.3■□□□□ 0.52
SNRPA1-216ENST00000626000 TSPYL4Q9UJ04 414 aa18.3■□□□□ 0.52
SNRPA1-216ENST00000626000 RRP7AQ9Y3A4 280 aaKnown RBP18.3■□□□□ 0.52
SNRPA1-216ENST00000626000 LAMB4A4D0S4 1761 aa18.3■□□□□ 0.52
SNRPA1-216ENST00000626000 CCER2I3L3R5 266 aa18.29■□□□□ 0.52
SNRPA1-216ENST00000626000 CCDC27Q2M243 656 aa18.29■□□□□ 0.52
SNRPA1-216ENST00000626000 SGIP1Q9BQI5 828 aa18.29■□□□□ 0.52
SNRPA1-216ENST00000626000 SOS1Q07889 1333 aaPredicted RBP18.28■□□□□ 0.52
SNRPA1-216ENST00000626000 IL6STP40189 918 aaPredicted RBP18.28■□□□□ 0.52
SNRPA1-216ENST00000626000 ARXQ96QS3 562 aa18.28■□□□□ 0.52
SNRPA1-216ENST00000626000 THUMPD2Q9BTF0 503 aaKnown RBP18.28■□□□□ 0.52
SNRPA1-216ENST00000626000 TRIM35Q9UPQ4 493 aa18.28■□□□□ 0.52
SNRPA1-216ENST00000626000 C4AP0C0L4 1744 aa18.28■□□□□ 0.52
SNRPA1-216ENST00000626000 ARHGEF1Q92888 912 aaKnown RBP18.27■□□□□ 0.52
SNRPA1-216ENST00000626000 COL15A1P39059 1388 aa18.27■□□□□ 0.51
SNRPA1-216ENST00000626000 CHL1O00533 1208 aa18.26■□□□□ 0.51
SNRPA1-216ENST00000626000 KCNQ3O43525 872 aa18.26■□□□□ 0.51
SNRPA1-216ENST00000626000 ZPR1O75312 459 aa18.26■□□□□ 0.51
SNRPA1-216ENST00000626000 EIF4A1P60842 406 aaKnown RBP18.26■□□□□ 0.51
SNRPA1-216ENST00000626000 CFAP44Q96MT7 982 aa18.26■□□□□ 0.51
SNRPA1-216ENST00000626000 CHMP4AQ9BY43 222 aa18.26■□□□□ 0.51
SNRPA1-216ENST00000626000 ERBB4Q15303 1308 aa18.25■□□□□ 0.51
SNRPA1-216ENST00000626000 USP42Q9H9J4 1324 aaKnown RBP18.25■□□□□ 0.51
SNRPA1-216ENST00000626000 GIGYF1O75420 1035 aaPredicted RBP18.25■□□□□ 0.51
SNRPA1-216ENST00000626000 GNAI1P63096 354 aa18.25■□□□□ 0.51
SNRPA1-216ENST00000626000 IFT57Q9NWB7 429 aa18.25■□□□□ 0.51
SNRPA1-216ENST00000626000 ZBTB1Q9Y2K1 713 aa18.25■□□□□ 0.51
SNRPA1-216ENST00000626000 RGL2O15211 777 aa18.24■□□□□ 0.51
SNRPA1-216ENST00000626000 HOXB7P09629 217 aa18.24■□□□□ 0.51
SNRPA1-216ENST00000626000 CANXP27824 592 aaKnown RBP18.24■□□□□ 0.51
SNRPA1-216ENST00000626000 EIF5P55010 431 aaKnown RBP18.24■□□□□ 0.51
SNRPA1-216ENST00000626000 AMIGO3Q86WK7 504 aa18.24■□□□□ 0.51
SNRPA1-216ENST00000626000 MIS18AQ9NYP9 233 aa18.24■□□□□ 0.51
SNRPA1-216ENST00000626000 NARFQ9UHQ1 456 aa18.24■□□□□ 0.51
SNRPA1-216ENST00000626000 DCAF8L1A6NGE4 600 aa18.23■□□□□ 0.51
SNRPA1-216ENST00000626000 DIEXFQ68CQ4 756 aaKnown RBP18.23■□□□□ 0.51
SNRPA1-216ENST00000626000 FAM9BQ8IZU0 186 aa18.22■□□□□ 0.51
SNRPA1-216ENST00000626000 USP16Q9Y5T5 823 aa18.22■□□□□ 0.51
SNRPA1-216ENST00000626000 IL16Q14005 1332 aa18.22■□□□□ 0.51
SNRPA1-216ENST00000626000 GYS1P13807 737 aa18.21■□□□□ 0.51
SNRPA1-216ENST00000626000 MSL1Q68DK7 614 aa18.21■□□□□ 0.51
SNRPA1-216ENST00000626000 LAS1LQ9Y4W2 734 aaKnown RBP18.2■□□□□ 0.5
SNRPA1-216ENST00000626000 CD2APQ9Y5K6 639 aa18.2■□□□□ 0.5
SNRPA1-216ENST00000626000 SCN7AQ01118 1682 aa18.19■□□□□ 0.5
SNRPA1-216ENST00000626000 A1BGP04217 495 aa18.19■□□□□ 0.5
SNRPA1-216ENST00000626000 WWC1Q8IX03 1113 aa18.19■□□□□ 0.5
SNRPA1-216ENST00000626000 ZNF652Q9Y2D9 606 aa18.19■□□□□ 0.5
SNRPA1-216ENST00000626000 PARP3Q9Y6F1 533 aa18.19■□□□□ 0.5
SNRPA1-216ENST00000626000 MMP10P09238 476 aa18.18■□□□□ 0.5
SNRPA1-216ENST00000626000 ZNF853P0CG23 659 aa18.18■□□□□ 0.5
SNRPA1-216ENST00000626000 WDR63Q8IWG1 891 aa18.18■□□□□ 0.5
SNRPA1-216ENST00000626000 FHDC1Q9C0D6 1143 aaPredicted RBP18.18■□□□□ 0.5
SNRPA1-216ENST00000626000 ZNF330Q9Y3S2 320 aaPredicted RBP18.18■□□□□ 0.5
SNRPA1-216ENST00000626000 CLEC4GQ6UXB4 293 aa18.17■□□□□ 0.5
SNRPA1-216ENST00000626000 SYT17Q9BSW7 474 aa18.17■□□□□ 0.5
SNRPA1-216ENST00000626000 USPL1Q5W0Q7 1092 aa18.16■□□□□ 0.5
SNRPA1-216ENST00000626000 SMIM5Q71RC9 77 aa18.16■□□□□ 0.5
SNRPA1-216ENST00000626000 DZIP3Q86Y13 1208 aaKnown RBP18.16■□□□□ 0.5
SNRPA1-216ENST00000626000 MBIPQ9NS73 344 aa18.16■□□□□ 0.5
SNRPA1-216ENST00000626000 BCORQ6W2J9 1755 aa18.15■□□□□ 0.5
SNRPA1-216ENST00000626000 PRAMEF22A3QJZ6 481 aa18.15■□□□□ 0.5
SNRPA1-216ENST00000626000 SRP68Q9UHB9 627 aaKnown RBP18.15■□□□□ 0.5
SNRPA1-216ENST00000626000 FKBP8Q14318 412 aa18.14■□□□□ 0.49
SNRPA1-216ENST00000626000 KIF6Q6ZMV9 814 aa18.14■□□□□ 0.49
SNRPA1-216ENST00000626000 NBPF26B4DH59 902 aa18.13■□□□□ 0.49
SNRPA1-216ENST00000626000 NBPF10Q6P3W6 841 aaKnown RBP18.13■□□□□ 0.49
SNRPA1-216ENST00000626000 KLHL34Q8N239 644 aa18.13■□□□□ 0.49
SNRPA1-216ENST00000626000 NBPF15Q8N660 670 aa18.13■□□□□ 0.49
SNRPA1-216ENST00000626000 KIF13BQ9NQT8 1826 aa18.12■□□□□ 0.49
SNRPA1-216ENST00000626000 ERVV-1B6SEH8 477 aa18.12■□□□□ 0.49
SNRPA1-216ENST00000626000 TM4SF1P30408 202 aa18.12■□□□□ 0.49
SNRPA1-216ENST00000626000 HDGFL1Q5TGJ6 251 aa18.12■□□□□ 0.49
SNRPA1-216ENST00000626000 MYH16Q9H6N6 1097 aa18.12■□□□□ 0.49
SNRPA1-216ENST00000626000 TBC1D2BQ9UPU7 963 aa18.12■□□□□ 0.49
SNRPA1-216ENST00000626000 CARMIL3Q8ND23 1372 aa18.12■□□□□ 0.49
SNRPA1-216ENST00000626000 CAMTA2O94983 1202 aa18.11■□□□□ 0.49
SNRPA1-216ENST00000626000 EIF2S2P20042 333 aaKnown RBP18.11■□□□□ 0.49
SNRPA1-216ENST00000626000 DUSP27Q5VZP5 1158 aa18.11■□□□□ 0.49
SNRPA1-216ENST00000626000 DDX21Q9NR30 783 aaKnown RBP eCLIP18.11■□□□□ 0.49
SNRPA1-216ENST00000626000 DBF4Q9UBU7 674 aaPredicted RBP18.11■□□□□ 0.49
SNRPA1-216ENST00000626000 C10orf71Q711Q0 1435 aa18.11■□□□□ 0.49
SNRPA1-216ENST00000626000 TGFB2P61812 414 aa18.1■□□□□ 0.49
SNRPA1-216ENST00000626000 NFIXQ14938 502 aa18.1■□□□□ 0.49
SNRPA1-216ENST00000626000 SETDB2Q96T68 719 aa18.1■□□□□ 0.49
SNRPA1-216ENST00000626000 BCL2L12Q9HB09 334 aa18.1■□□□□ 0.49
SNRPA1-216ENST00000626000 MAP3K15Q6ZN16 1313 aa18.09■□□□□ 0.49
SNRPA1-216ENST00000626000 POLRMTO00411 1230 aaKnown RBP18.09■□□□□ 0.49
SNRPA1-216ENST00000626000 HYPKQ9NX55 129 aa18.09■□□□□ 0.49
SNRPA1-216ENST00000626000 PDZRN3Q9UPQ7 1066 aa18.09■□□□□ 0.49
SNRPA1-216ENST00000626000 NRXN2Q9P2S2 1712 aa18.09■□□□□ 0.49
SNRPA1-216ENST00000626000 MYL6BP14649 208 aa18.08■□□□□ 0.48
SNRPA1-216ENST00000626000 GOLGA2Q08379 1002 aa18.08■□□□□ 0.48
SNRPA1-216ENST00000626000 PIP4K2AP48426 406 aaPredicted RBP18.07■□□□□ 0.48
SNRPA1-216ENST00000626000 DDR1Q08345 913 aa18.07■□□□□ 0.48
SNRPA1-216ENST00000626000 HSP90AB3PQ58FF7 597 aa18.07■□□□□ 0.48
SNRPA1-216ENST00000626000 CCDC30Q5VVM6 783 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms