RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 SLC39A6Q13433 755 aa20.05■□□□□ 0.8
PNKP-218ENST00000625299 NFIXQ14938 502 aa20.05■□□□□ 0.8
PNKP-218ENST00000625299 AKAP4Q5JQC9 854 aa20.05■□□□□ 0.8
PNKP-218ENST00000625299 SLC52A2Q9HAB3 445 aa20.05■□□□□ 0.8
PNKP-218ENST00000625299 COL15A1P39059 1388 aa20.05■□□□□ 0.8
PNKP-218ENST00000625299 DLEC1Q9Y238 1755 aa20.04■□□□□ 0.8
PNKP-218ENST00000625299 LGR6Q9HBX8 967 aa20.04■□□□□ 0.8
PNKP-218ENST00000625299 TIMELESSQ9UNS1 1208 aa20.04■□□□□ 0.8
PNKP-218ENST00000625299 CCDC88AQ3V6T2 1871 aa20.04■□□□□ 0.8
PNKP-218ENST00000625299 ZC3H4Q9UPT8 1303 aaKnown RBP20.03■□□□□ 0.8
PNKP-218ENST00000625299 CYP19A1P11511 503 aaPredicted RBP20.03■□□□□ 0.8
PNKP-218ENST00000625299 LMNB1P20700 586 aa20.03■□□□□ 0.8
PNKP-218ENST00000625299 IL13P35225 146 aa20.03■□□□□ 0.8
PNKP-218ENST00000625299 TNS4Q8IZW8 715 aa20.03■□□□□ 0.8
PNKP-218ENST00000625299 NARFQ9UHQ1 456 aa20.03■□□□□ 0.8
PNKP-218ENST00000625299 ZBTB1Q9Y2K1 713 aa20.03■□□□□ 0.8
PNKP-218ENST00000625299 NRXN2Q9P2S2 1712 aa20.02■□□□□ 0.8
PNKP-218ENST00000625299 SERPINB2P05120 415 aa20.02■□□□□ 0.8
PNKP-218ENST00000625299 HSPA5P11021 654 aaKnown RBP20.02■□□□□ 0.8
PNKP-218ENST00000625299 EIF4G2P78344 907 aaKnown RBP eCLIP20.02■□□□□ 0.8
PNKP-218ENST00000625299 TRIM26Q12899 539 aaPredicted RBP20.02■□□□□ 0.8
PNKP-218ENST00000625299 C2CD5Q86YS7 1000 aa20.02■□□□□ 0.8
PNKP-218ENST00000625299 GLTPD2A6NH11 291 aa20.01■□□□□ 0.79
PNKP-218ENST00000625299 VEGFAP15692 232 aaPredicted RBP20.01■□□□□ 0.79
PNKP-218ENST00000625299 PRELPP51888 382 aa20.01■□□□□ 0.79
PNKP-218ENST00000625299 TTLL6Q8N841 843 aa20.01■□□□□ 0.79
PNKP-218ENST00000625299 MRC1P22897 1456 aa20■□□□□ 0.79
PNKP-218ENST00000625299 CARMIL3Q8ND23 1372 aa20■□□□□ 0.79
PNKP-218ENST00000625299 RNMTO43148 476 aaKnown RBP20■□□□□ 0.79
PNKP-218ENST00000625299 HMOX1P09601 288 aa20■□□□□ 0.79
PNKP-218ENST00000625299 CANXP27824 592 aaKnown RBP20■□□□□ 0.79
PNKP-218ENST00000625299 BICDL1Q6ZP65 573 aa20■□□□□ 0.79
PNKP-218ENST00000625299 BCL2L12Q9HB09 334 aa19.99■□□□□ 0.79
PNKP-218ENST00000625299 KNSTRNQ9Y448 316 aa19.99■□□□□ 0.79
PNKP-218ENST00000625299 H0YIN7 160 aa19.98■□□□□ 0.79
PNKP-218ENST00000625299 ZNF219Q9P2Y4 722 aaPredicted RBP19.98■□□□□ 0.79
PNKP-218ENST00000625299 NFKBIEO00221 500 aa19.97■□□□□ 0.79
PNKP-218ENST00000625299 HSPA1AP0DMV8 641 aaKnown RBP19.97■□□□□ 0.79
PNKP-218ENST00000625299 HSPA1BP0DMV9 641 aaKnown RBP19.97■□□□□ 0.79
PNKP-218ENST00000625299 PCGF6Q9BYE7 350 aa19.96■□□□□ 0.79
PNKP-218ENST00000625299 ZNF622Q969S3 477 aaKnown RBP eCLIP19.95■□□□□ 0.78
PNKP-218ENST00000625299 ZNF330Q9Y3S2 320 aaPredicted RBP19.95■□□□□ 0.78
PNKP-218ENST00000625299 UBR2Q8IWV8 1755 aa19.95■□□□□ 0.78
PNKP-218ENST00000625299 MTHFSDQ2M296 383 aaKnown RBP19.94■□□□□ 0.78
PNKP-218ENST00000625299 TTC5Q8N0Z6 440 aa19.94■□□□□ 0.78
PNKP-218ENST00000625299 CCDC24Q8N4L8 307 aa19.94■□□□□ 0.78
PNKP-218ENST00000625299 ANKRD31Q8N7Z5 1873 aa19.94■□□□□ 0.78
PNKP-218ENST00000625299 DPY19L2Q6NUT2 758 aa19.93■□□□□ 0.78
PNKP-218ENST00000625299 VSIG10Q8N0Z9 540 aa19.93■□□□□ 0.78
PNKP-218ENST00000625299 C21orf2O43822 256 aa19.92■□□□□ 0.78
PNKP-218ENST00000625299 STARD3NLO95772 234 aa19.92■□□□□ 0.78
PNKP-218ENST00000625299 TBC1D9BQ66K14 1250 aa19.92■□□□□ 0.78
PNKP-218ENST00000625299 COL11A2P13942 1736 aaPredicted RBP19.92■□□□□ 0.78
PNKP-218ENST00000625299 CACNA1SQ13698 1873 aa19.91■□□□□ 0.78
PNKP-218ENST00000625299 A0A087WZG4 1122 aa19.91■□□□□ 0.78
PNKP-218ENST00000625299 ERFEQ4G0M1 354 aa19.91■□□□□ 0.78
PNKP-218ENST00000625299 SCN7AQ01118 1682 aa19.91■□□□□ 0.78
PNKP-218ENST00000625299 DICER1Q9UPY3 1922 aaKnown RBP19.9■□□□□ 0.78
PNKP-218ENST00000625299 POTECB2RU33 542 aa19.9■□□□□ 0.78
PNKP-218ENST00000625299 NPHP1O15259 732 aa19.9■□□□□ 0.78
PNKP-218ENST00000625299 EIF5P55010 431 aaKnown RBP19.9■□□□□ 0.78
PNKP-218ENST00000625299 PDE6BP35913 854 aa19.89■□□□□ 0.77
PNKP-218ENST00000625299 FER1L6Q2WGJ9 1857 aa19.89■□□□□ 0.77
PNKP-218ENST00000625299 AMER1Q5JTC6 1135 aaPredicted RBP19.89■□□□□ 0.77
PNKP-218ENST00000625299 CLSPNQ9HAW4 1339 aa19.89■□□□□ 0.77
PNKP-218ENST00000625299 TBC1D2BQ9UPU7 963 aa19.89■□□□□ 0.77
PNKP-218ENST00000625299 PRR5LQ6MZQ0 368 aa19.88■□□□□ 0.77
PNKP-218ENST00000625299 BRIP1Q9BX63 1249 aa19.88■□□□□ 0.77
PNKP-218ENST00000625299 DIAPH1O60610 1272 aaKnown RBP19.87■□□□□ 0.77
PNKP-218ENST00000625299 ZNF496Q96IT1 587 aaPredicted RBP19.87■□□□□ 0.77
PNKP-218ENST00000625299 TAOK3Q9H2K8 898 aa19.87■□□□□ 0.77
PNKP-218ENST00000625299 MKRN1Q9UHC7 482 aaKnown RBP19.87■□□□□ 0.77
PNKP-218ENST00000625299 TEFQ10587 303 aa19.86■□□□□ 0.77
PNKP-218ENST00000625299 PDZRN3Q9UPQ7 1066 aa19.86■□□□□ 0.77
PNKP-218ENST00000625299 HEG1Q9ULI3 1381 aa19.85■□□□□ 0.77
PNKP-218ENST00000625299 CHADLQ6NUI6 762 aa19.85■□□□□ 0.77
PNKP-218ENST00000625299 NPM2Q86SE8 214 aaKnown RBP19.85■□□□□ 0.77
PNKP-218ENST00000625299 CNBD1Q8NA66 436 aa19.85■□□□□ 0.77
PNKP-218ENST00000625299 SLX4Q8IY92 1834 aa19.84■□□□□ 0.77
PNKP-218ENST00000625299 DDNO94850 711 aaPredicted RBP19.84■□□□□ 0.77
PNKP-218ENST00000625299 POTEIP0CG38 1075 aa19.84■□□□□ 0.77
PNKP-218ENST00000625299 POTEJP0CG39 1038 aa19.84■□□□□ 0.77
PNKP-218ENST00000625299 CNGB1Q14028 1251 aaPredicted RBP19.84■□□□□ 0.77
PNKP-218ENST00000625299 CC2D1BQ5T0F9 858 aaKnown RBP19.84■□□□□ 0.77
PNKP-218ENST00000625299 ZNF790Q6PG37 636 aa19.84■□□□□ 0.77
PNKP-218ENST00000625299 U2SURPO15042 1029 aaKnown RBP19.83■□□□□ 0.77
PNKP-218ENST00000625299 ST5P78524 1137 aa19.83■□□□□ 0.77
PNKP-218ENST00000625299 SETDB2Q96T68 719 aa19.83■□□□□ 0.77
PNKP-218ENST00000625299 CREBZFQ9NS37 354 aa19.83■□□□□ 0.77
PNKP-218ENST00000625299 SIPA1L3O60292 1781 aaPredicted RBP19.83■□□□□ 0.76
PNKP-218ENST00000625299 IL6STP40189 918 aaPredicted RBP19.82■□□□□ 0.76
PNKP-218ENST00000625299 PRPF40BQ6NWY9 871 aaKnown RBP19.82■□□□□ 0.76
PNKP-218ENST00000625299 CNKSR1Q969H4 720 aa19.82■□□□□ 0.76
PNKP-218ENST00000625299 TEX13AQ9BXU3 409 aaPredicted RBP19.82■□□□□ 0.76
PNKP-218ENST00000625299 LTBP3Q9NS15 1303 aa19.81■□□□□ 0.76
PNKP-218ENST00000625299 GNAT3A8MTJ3 354 aa19.81■□□□□ 0.76
PNKP-218ENST00000625299 A1BGP04217 495 aa19.81■□□□□ 0.76
PNKP-218ENST00000625299 IL17REQ8NFR9 667 aa19.81■□□□□ 0.76
PNKP-218ENST00000625299 FMNL2Q96PY5 1086 aa19.81■□□□□ 0.76
PNKP-218ENST00000625299 BCORQ6W2J9 1755 aa19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms