RNA–Protein interactions for RNA: ENST00000621870.4

GGA3-223, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 1 (best)

Gene GGA3, Length 4,034 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-223ENST00000621870 TSHZ3Q63HK5 1081 aa10.96□□□□□ -0.65
GGA3-223ENST00000621870 CDK5RAP3Q96JB5 506 aa10.96□□□□□ -0.65
GGA3-223ENST00000621870 GOLIM4O00461 696 aa10.96□□□□□ -0.66
GGA3-223ENST00000621870 ANKRD1Q15327 319 aa10.96□□□□□ -0.66
GGA3-223ENST00000621870 DZIP3Q86Y13 1208 aaKnown RBP10.96□□□□□ -0.66
GGA3-223ENST00000621870 ATP7AQ04656 1500 aa10.96□□□□□ -0.66
GGA3-223ENST00000621870 TCOF1Q13428 1488 aaKnown RBP10.96□□□□□ -0.66
GGA3-223ENST00000621870 RALGAPBQ86X10 1494 aa10.96□□□□□ -0.66
GGA3-223ENST00000621870 RANBP6O60518 1105 aaKnown RBP10.95□□□□□ -0.66
GGA3-223ENST00000621870 TMEM132AQ24JP5 1023 aa10.95□□□□□ -0.66
GGA3-223ENST00000621870 WDR78Q5VTH9 848 aa10.95□□□□□ -0.66
GGA3-223ENST00000621870 LARP1BQ659C4 914 aaKnown RBP10.95□□□□□ -0.66
GGA3-223ENST00000621870 ARID3AQ99856 593 aa10.95□□□□□ -0.66
GGA3-223ENST00000621870 DDX11Q96FC9 970 aa10.95□□□□□ -0.66
GGA3-223ENST00000621870 U3KPZ7 1027 aaPredicted RBP10.95□□□□□ -0.66
GGA3-223ENST00000621870 ST5P78524 1137 aa10.95□□□□□ -0.66
GGA3-223ENST00000621870 PRPF40BQ6NWY9 871 aaKnown RBP10.95□□□□□ -0.66
GGA3-223ENST00000621870 ECHDC1Q9NTX5 307 aa10.95□□□□□ -0.66
GGA3-223ENST00000621870 KINO60870 393 aaKnown RBP10.94□□□□□ -0.66
GGA3-223ENST00000621870 KRT32Q14532 448 aa10.94□□□□□ -0.66
GGA3-223ENST00000621870 TSPYL6Q8N831 410 aa10.94□□□□□ -0.66
GGA3-223ENST00000621870 RNF214Q8ND24 703 aa10.94□□□□□ -0.66
GGA3-223ENST00000621870 PDRG1Q9NUG6 133 aa10.94□□□□□ -0.66
GGA3-223ENST00000621870 KRT18P05783 430 aaKnown RBP10.94□□□□□ -0.66
GGA3-223ENST00000621870 CCDC152Q4G0S7 254 aa10.94□□□□□ -0.66
GGA3-223ENST00000621870 CCAR2Q8N163 923 aaKnown RBP10.94□□□□□ -0.66
GGA3-223ENST00000621870 ZHX3Q9H4I2 956 aa10.94□□□□□ -0.66
GGA3-223ENST00000621870 IL16Q14005 1332 aa10.94□□□□□ -0.66
GGA3-223ENST00000621870 TXLNAP40222 546 aa10.94□□□□□ -0.66
GGA3-223ENST00000621870 SLC4A8Q2Y0W8 1093 aa10.94□□□□□ -0.66
GGA3-223ENST00000621870 ANKRD18AQ8IVF6 992 aa10.94□□□□□ -0.66
GGA3-223ENST00000621870 BACH2Q9BYV9 841 aa10.94□□□□□ -0.66
GGA3-223ENST00000621870 ABCC1P33527 1531 aa10.94□□□□□ -0.66
GGA3-223ENST00000621870 SHANK2Q9UPX8 1470 aa10.94□□□□□ -0.66
GGA3-223ENST00000621870 TRPM2O94759 1503 aa10.94□□□□□ -0.66
GGA3-223ENST00000621870 GNPATO15228 680 aa10.93□□□□□ -0.66
GGA3-223ENST00000621870 CASTP20810 708 aaKnown RBP10.93□□□□□ -0.66
GGA3-223ENST00000621870 TPTE2Q6XPS3 522 aa10.93□□□□□ -0.66
GGA3-223ENST00000621870 NSFL1CQ9UNZ2 370 aaKnown RBP10.93□□□□□ -0.66
GGA3-223ENST00000621870 GRM8O00222 908 aa10.93□□□□□ -0.66
GGA3-223ENST00000621870 PRIM1P49642 420 aaKnown RBP10.93□□□□□ -0.66
GGA3-223ENST00000621870 NBPF14Q5TI25 921 aa10.93□□□□□ -0.66
GGA3-223ENST00000621870 KSR2Q6VAB6 950 aa10.93□□□□□ -0.66
GGA3-223ENST00000621870 ZNF287Q9HBT7 754 aa10.93□□□□□ -0.66
GGA3-223ENST00000621870 NEO1Q92859 1461 aa10.93□□□□□ -0.66
GGA3-223ENST00000621870 CWF19L2Q2TBE0 894 aaKnown RBP10.93□□□□□ -0.66
GGA3-223ENST00000621870 ZNF444Q8N0Y2 327 aaPredicted RBP10.93□□□□□ -0.66
GGA3-223ENST00000621870 SSBP05455 408 aaKnown RBP eCLIP10.93□□□□□ -0.66
GGA3-223ENST00000621870 ME1P48163 572 aa10.93□□□□□ -0.66
GGA3-223ENST00000621870 HELBQ8NG08 1087 aaPredicted RBP10.93□□□□□ -0.66
GGA3-223ENST00000621870 F8W031 263 aaPredicted RBP10.92□□□□□ -0.66
GGA3-223ENST00000621870 PRPF40AO75400 957 aaKnown RBP10.92□□□□□ -0.66
GGA3-223ENST00000621870 USP21Q9UK80 565 aa10.92□□□□□ -0.66
GGA3-223ENST00000621870 OFD1O75665 1012 aa10.92□□□□□ -0.66
GGA3-223ENST00000621870 FERMT3Q86UX7 667 aa10.92□□□□□ -0.66
GGA3-223ENST00000621870 LINS1Q8NG48 757 aa10.92□□□□□ -0.66
GGA3-223ENST00000621870 ABCA5Q8WWZ7 1642 aa10.92□□□□□ -0.66
GGA3-223ENST00000621870 RNMTO43148 476 aaKnown RBP10.92□□□□□ -0.66
GGA3-223ENST00000621870 JMYQ8N9B5 988 aa10.92□□□□□ -0.66
GGA3-223ENST00000621870 LDHCP07864 332 aa10.91□□□□□ -0.66
GGA3-223ENST00000621870 IQCA1Q86XH1 822 aa10.91□□□□□ -0.66
GGA3-223ENST00000621870 CCNL1Q9UK58 526 aaPredicted RBP10.91□□□□□ -0.66
GGA3-223ENST00000621870 ASXL1Q8IXJ9 1541 aa10.91□□□□□ -0.66
GGA3-223ENST00000621870 ZNF213O14771 459 aa10.91□□□□□ -0.66
GGA3-223ENST00000621870 PER1O15534 1290 aaPredicted RBP10.91□□□□□ -0.66
GGA3-223ENST00000621870 HAND2P61296 217 aa10.91□□□□□ -0.66
GGA3-223ENST00000621870 ATP2B3Q16720 1220 aa10.91□□□□□ -0.66
GGA3-223ENST00000621870 ZNF396Q96N95 335 aaPredicted RBP10.91□□□□□ -0.66
GGA3-223ENST00000621870 PZPP20742 1482 aa10.91□□□□□ -0.66
GGA3-223ENST00000621870 MAPKBP1O60336 1514 aa10.91□□□□□ -0.66
GGA3-223ENST00000621870 GSE1Q14687 1217 aa10.91□□□□□ -0.66
GGA3-223ENST00000621870 RHPN1Q8TCX5 695 aa10.91□□□□□ -0.66
GGA3-223ENST00000621870 FEZ1Q99689 392 aa10.91□□□□□ -0.66
GGA3-223ENST00000621870 ZC3H12CQ9C0D7 883 aaKnown RBP10.91□□□□□ -0.66
GGA3-223ENST00000621870 PCDH11XQ9BZA7 1347 aa10.91□□□□□ -0.66
GGA3-223ENST00000621870 PCDH11YQ9BZA8 1340 aa10.91□□□□□ -0.66
GGA3-223ENST00000621870 CDKL5O76039 1030 aa10.9□□□□□ -0.66
GGA3-223ENST00000621870 CAVIN1Q6NZI2 390 aaKnown RBP10.9□□□□□ -0.66
GGA3-223ENST00000621870 OLFM4Q6UX06 510 aa10.9□□□□□ -0.66
GGA3-223ENST00000621870 SLF2Q8IX21 1173 aa10.9□□□□□ -0.66
GGA3-223ENST00000621870 LGR6Q9HBX8 967 aa10.9□□□□□ -0.66
GGA3-223ENST00000621870 PA2G4Q9UQ80 394 aaKnown RBP10.9□□□□□ -0.66
GGA3-223ENST00000621870 TARBP1Q13395 1621 aaKnown RBP10.9□□□□□ -0.66
GGA3-223ENST00000621870 TMEM94Q12767 1356 aa10.9□□□□□ -0.66
GGA3-223ENST00000621870 K7ELQ4 463 aaPredicted RBP10.9□□□□□ -0.66
GGA3-223ENST00000621870 ZNF76P36508 570 aa10.9□□□□□ -0.66
GGA3-223ENST00000621870 EPS15P42566 896 aa10.9□□□□□ -0.66
GGA3-223ENST00000621870 CHMP4BP1P59074 171 aa10.9□□□□□ -0.66
GGA3-223ENST00000621870 CCDC96Q2M329 555 aa10.9□□□□□ -0.66
GGA3-223ENST00000621870 NFKBIBQ15653 356 aa10.9□□□□□ -0.67
GGA3-223ENST00000621870 ZNF790Q6PG37 636 aa10.9□□□□□ -0.67
GGA3-223ENST00000621870 UTP14AQ9BVJ6 771 aaKnown RBP10.9□□□□□ -0.67
GGA3-223ENST00000621870 PHAXQ9H814 394 aaKnown RBP10.9□□□□□ -0.67
GGA3-223ENST00000621870 POLD1P28340 1107 aa10.89□□□□□ -0.67
GGA3-223ENST00000621870 CTCFLQ8NI51 663 aaPredicted RBP10.89□□□□□ -0.67
GGA3-223ENST00000621870 LARP6Q9BRS8 491 aaKnown RBP10.89□□□□□ -0.67
GGA3-223ENST00000621870 MAP3K5Q99683 1374 aa10.89□□□□□ -0.67
GGA3-223ENST00000621870 PBRM1Q86U86 1689 aa10.89□□□□□ -0.67
GGA3-223ENST00000621870 VAMP4O75379 141 aa10.89□□□□□ -0.67
GGA3-223ENST00000621870 WDHD1O75717 1129 aaPredicted RBP10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms