RNA–Protein interactions for RNA: ENST00000621266.4

COL4A6-210, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,627 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-210ENST00000621266 NCKAP5LQ9HCH0 1330 aa11.49□□□□□ -0.57
COL4A6-210ENST00000621266 POTEB2H3BUK9 544 aa11.49□□□□□ -0.57
COL4A6-210ENST00000621266 TOM1O60784 492 aa11.48□□□□□ -0.57
COL4A6-210ENST00000621266 MSL1Q68DK7 614 aa11.48□□□□□ -0.57
COL4A6-210ENST00000621266 CKAP2LQ8IYA6 745 aa11.48□□□□□ -0.57
COL4A6-210ENST00000621266 TRIM22Q8IYM9 498 aa11.48□□□□□ -0.57
COL4A6-210ENST00000621266 GTPBP4Q9BZE4 634 aaKnown RBP11.48□□□□□ -0.57
COL4A6-210ENST00000621266 ATAD2Q6PL18 1390 aa11.48□□□□□ -0.57
COL4A6-210ENST00000621266 IVLP07476 585 aa11.48□□□□□ -0.57
COL4A6-210ENST00000621266 CCDC6Q16204 474 aa11.48□□□□□ -0.57
COL4A6-210ENST00000621266 FBF1Q8TES7 1133 aa11.48□□□□□ -0.57
COL4A6-210ENST00000621266 KIF14Q15058 1648 aa11.48□□□□□ -0.57
COL4A6-210ENST00000621266 BICRAQ9NZM4 1560 aa11.48□□□□□ -0.57
COL4A6-210ENST00000621266 EXOSC9Q06265 439 aaKnown RBP11.48□□□□□ -0.57
COL4A6-210ENST00000621266 SCLT1Q96NL6 688 aa11.48□□□□□ -0.57
COL4A6-210ENST00000621266 HYPKQ9NX55 129 aa11.48□□□□□ -0.57
COL4A6-210ENST00000621266 TTLL12Q14166 644 aaPredicted RBP11.48□□□□□ -0.57
COL4A6-210ENST00000621266 ZNF530Q6P9A1 599 aaPredicted RBP11.48□□□□□ -0.57
COL4A6-210ENST00000621266 MPRIPQ6WCQ1 1025 aa11.48□□□□□ -0.57
COL4A6-210ENST00000621266 SKAP1Q86WV1 359 aa11.48□□□□□ -0.57
COL4A6-210ENST00000621266 PRIMPOLQ96LW4 560 aa11.48□□□□□ -0.57
COL4A6-210ENST00000621266 FOXO3O43524 673 aa11.48□□□□□ -0.57
COL4A6-210ENST00000621266 WWC2Q6AWC2 1192 aa11.48□□□□□ -0.57
COL4A6-210ENST00000621266 TMC6Q7Z403 805 aa11.48□□□□□ -0.57
COL4A6-210ENST00000621266 CHD1LQ86WJ1 897 aa11.48□□□□□ -0.57
COL4A6-210ENST00000621266 CTNNBL1Q8WYA6 563 aaPredicted RBP11.48□□□□□ -0.57
COL4A6-210ENST00000621266 ZPR1O75312 459 aa11.47□□□□□ -0.57
COL4A6-210ENST00000621266 MATR3P43243 847 aaKnown RBP eCLIP11.47□□□□□ -0.57
COL4A6-210ENST00000621266 ANO10Q9NW15 660 aa11.47□□□□□ -0.57
COL4A6-210ENST00000621266 RBM27Q9P2N5 1060 aaKnown RBP11.47□□□□□ -0.57
COL4A6-210ENST00000621266 PAFAH1B1P43034 410 aa11.47□□□□□ -0.57
COL4A6-210ENST00000621266 PLB1Q6P1J6 1458 aa11.47□□□□□ -0.57
COL4A6-210ENST00000621266 CUL7Q14999 1698 aa11.47□□□□□ -0.57
COL4A6-210ENST00000621266 TWISTNBQ3B726 338 aaPredicted RBP11.47□□□□□ -0.57
COL4A6-210ENST00000621266 NUP88Q99567 741 aaPredicted RBP11.47□□□□□ -0.57
COL4A6-210ENST00000621266 AMOTL2Q9Y2J4 779 aa11.47□□□□□ -0.57
COL4A6-210ENST00000621266 C6orf163Q5TEZ5 329 aa11.47□□□□□ -0.57
COL4A6-210ENST00000621266 BLOC1S2Q6QNY1 142 aa11.47□□□□□ -0.57
COL4A6-210ENST00000621266 TNPO1Q92973 898 aaKnown RBP11.47□□□□□ -0.57
COL4A6-210ENST00000621266 CCDC85AQ96PX6 553 aaPredicted RBP11.47□□□□□ -0.57
COL4A6-210ENST00000621266 NOL7Q9UMY1 257 aaKnown RBP11.47□□□□□ -0.57
COL4A6-210ENST00000621266 NEBLO76041 1014 aa11.46□□□□□ -0.57
COL4A6-210ENST00000621266 TTC39AQ5SRH9 613 aa11.46□□□□□ -0.57
COL4A6-210ENST00000621266 SULT6B1Q6IMI4 303 aa11.46□□□□□ -0.57
COL4A6-210ENST00000621266 CWC27Q6UX04 472 aaKnown RBP11.46□□□□□ -0.57
COL4A6-210ENST00000621266 ERC1Q8IUD2 1116 aa11.46□□□□□ -0.57
COL4A6-210ENST00000621266 CCDC83Q8IWF9 413 aa11.46□□□□□ -0.57
COL4A6-210ENST00000621266 HSF2BPO75031 334 aa11.46□□□□□ -0.57
COL4A6-210ENST00000621266 CFAP57Q96MR6 1250 aa11.46□□□□□ -0.57
COL4A6-210ENST00000621266 RNF216Q9NWF9 866 aaPredicted RBP11.46□□□□□ -0.57
COL4A6-210ENST00000621266 GRIN2AQ12879 1464 aa11.46□□□□□ -0.57
COL4A6-210ENST00000621266 SEPT6Q14141 434 aa11.46□□□□□ -0.58
COL4A6-210ENST00000621266 PIBF1Q8WXW3 757 aa11.46□□□□□ -0.58
COL4A6-210ENST00000621266 CPSF2Q9P2I0 782 aaKnown RBP11.46□□□□□ -0.58
COL4A6-210ENST00000621266 NAIPQ13075 1403 aa11.46□□□□□ -0.58
COL4A6-210ENST00000621266 CASTP20810 708 aaKnown RBP11.46□□□□□ -0.58
COL4A6-210ENST00000621266 GNAI2P04899 355 aa11.45□□□□□ -0.58
COL4A6-210ENST00000621266 ANAPC15P60006 121 aa11.45□□□□□ -0.58
COL4A6-210ENST00000621266 CCDC94Q9BW85 323 aaPredicted RBP11.45□□□□□ -0.58
COL4A6-210ENST00000621266 PAXBP1Q9Y5B6 917 aa11.45□□□□□ -0.58
COL4A6-210ENST00000621266 NAA25Q14CX7 972 aa11.45□□□□□ -0.58
COL4A6-210ENST00000621266 CEP112Q8N8E3 955 aa11.45□□□□□ -0.58
COL4A6-210ENST00000621266 MYCNP04198 464 aaPredicted RBP11.45□□□□□ -0.58
COL4A6-210ENST00000621266 ARID4AP29374 1257 aaPredicted RBP11.45□□□□□ -0.58
COL4A6-210ENST00000621266 MCM6Q14566 821 aa11.45□□□□□ -0.58
COL4A6-210ENST00000621266 ZSCAN31Q96LW9 406 aaPredicted RBP11.45□□□□□ -0.58
COL4A6-210ENST00000621266 MCM5P33992 734 aa11.45□□□□□ -0.58
COL4A6-210ENST00000621266 PDE3AQ14432 1141 aa11.45□□□□□ -0.58
COL4A6-210ENST00000621266 TSR2Q969E8 191 aaKnown RBP11.45□□□□□ -0.58
COL4A6-210ENST00000621266 ACSBG1Q96GR2 724 aa11.45□□□□□ -0.58
COL4A6-210ENST00000621266 SIL1Q9H173 461 aa11.45□□□□□ -0.58
COL4A6-210ENST00000621266 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.45□□□□□ -0.58
COL4A6-210ENST00000621266 V9GYY5 206 aaPredicted RBP11.45□□□□□ -0.58
COL4A6-210ENST00000621266 BTBD11A6QL63 1104 aa11.45□□□□□ -0.58
COL4A6-210ENST00000621266 CAPN2P17655 700 aa11.45□□□□□ -0.58
COL4A6-210ENST00000621266 WDR66Q8TBY9 1149 aa11.45□□□□□ -0.58
COL4A6-210ENST00000621266 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.45□□□□□ -0.58
COL4A6-210ENST00000621266 LMTK3Q96Q04 1460 aa11.45□□□□□ -0.58
COL4A6-210ENST00000621266 PTCD1O75127 700 aaKnown RBP11.45□□□□□ -0.58
COL4A6-210ENST00000621266 CLCN1P35523 988 aa11.45□□□□□ -0.58
COL4A6-210ENST00000621266 SARNPP82979 210 aaKnown RBP11.45□□□□□ -0.58
COL4A6-210ENST00000621266 CACNA2D4Q7Z3S7 1137 aa11.45□□□□□ -0.58
COL4A6-210ENST00000621266 PNISRQ8TF01 805 aaKnown RBP11.45□□□□□ -0.58
COL4A6-210ENST00000621266 TMOD3Q9NYL9 352 aa11.45□□□□□ -0.58
COL4A6-210ENST00000621266 GBP6Q6ZN66 633 aa11.44□□□□□ -0.58
COL4A6-210ENST00000621266 KRT28Q7Z3Y7 464 aa11.44□□□□□ -0.58
COL4A6-210ENST00000621266 CCDC12Q8WUD4 166 aaPredicted RBP11.44□□□□□ -0.58
COL4A6-210ENST00000621266 DDX23Q9BUQ8 820 aaKnown RBP11.44□□□□□ -0.58
COL4A6-210ENST00000621266 ZSCAN29Q8IWY8 852 aaPredicted RBP11.44□□□□□ -0.58
COL4A6-210ENST00000621266 NAP1L3Q99457 506 aaPredicted RBP11.44□□□□□ -0.58
COL4A6-210ENST00000621266 CEP83Q9Y592 693 aa11.44□□□□□ -0.58
COL4A6-210ENST00000621266 GDPD2Q9HCC8 539 aa11.44□□□□□ -0.58
COL4A6-210ENST00000621266 SLC3A2P08195 630 aaKnown RBP11.44□□□□□ -0.58
COL4A6-210ENST00000621266 NUDT16Q96DE0 195 aaKnown RBP11.44□□□□□ -0.58
COL4A6-210ENST00000621266 MACROD2A1Z1Q3 448 aa11.44□□□□□ -0.58
COL4A6-210ENST00000621266 ATRIPQ8WXE1 791 aa11.44□□□□□ -0.58
COL4A6-210ENST00000621266 PCF11O94913 1555 aaKnown RBP11.43□□□□□ -0.58
COL4A6-210ENST00000621266 CCDC57Q2TAC2 916 aa11.43□□□□□ -0.58
COL4A6-210ENST00000621266 CAMSAP2Q08AD1 1489 aa11.43□□□□□ -0.58
COL4A6-210ENST00000621266 USO1O60763 962 aaKnown RBP11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms