RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 HEG1Q9ULI3 1381 aa25.4■■□□□ 1.66
CCDC28A-203ENST00000617445 NEFMP07197 916 aa25.39■■□□□ 1.66
CCDC28A-203ENST00000617445 TM4SF1P30408 202 aa25.39■■□□□ 1.66
CCDC28A-203ENST00000617445 COL15A1P39059 1388 aa25.39■■□□□ 1.65
CCDC28A-203ENST00000617445 PXDNLA1KZ92 1463 aa25.39■■□□□ 1.65
CCDC28A-203ENST00000617445 A0A087WZG4 1122 aa25.38■■□□□ 1.65
CCDC28A-203ENST00000617445 BTBD11A6QL63 1104 aa25.38■■□□□ 1.65
CCDC28A-203ENST00000617445 USPL1Q5W0Q7 1092 aa25.38■■□□□ 1.65
CCDC28A-203ENST00000617445 A0A0G2JLW4 131 aa25.36■■□□□ 1.65
CCDC28A-203ENST00000617445 EIF5P55010 431 aaKnown RBP25.36■■□□□ 1.65
CCDC28A-203ENST00000617445 PNNQ9H307 717 aaKnown RBP25.36■■□□□ 1.65
CCDC28A-203ENST00000617445 KIAA1551Q9HCM1 1747 aa25.35■■□□□ 1.65
CCDC28A-203ENST00000617445 CANXP27824 592 aaKnown RBP25.35■■□□□ 1.65
CCDC28A-203ENST00000617445 DDR1Q08345 913 aa25.35■■□□□ 1.65
CCDC28A-203ENST00000617445 RALBP1Q15311 655 aa25.35■■□□□ 1.65
CCDC28A-203ENST00000617445 N4BP2Q86UW6 1770 aaPredicted RBP25.35■■□□□ 1.65
CCDC28A-203ENST00000617445 POLRMTO00411 1230 aaKnown RBP25.34■■□□□ 1.65
CCDC28A-203ENST00000617445 DPEP1P16444 411 aa25.33■■□□□ 1.65
CCDC28A-203ENST00000617445 IL6STP40189 918 aaPredicted RBP25.32■■□□□ 1.64
CCDC28A-203ENST00000617445 MCM10Q7L590 875 aa25.32■■□□□ 1.64
CCDC28A-203ENST00000617445 WWC3Q9ULE0 1092 aa25.32■■□□□ 1.64
CCDC28A-203ENST00000617445 NPM2Q86SE8 214 aaKnown RBP25.31■■□□□ 1.64
CCDC28A-203ENST00000617445 BCS1LQ9Y276 419 aa25.31■■□□□ 1.64
CCDC28A-203ENST00000617445 NFIXQ14938 502 aa25.3■■□□□ 1.64
CCDC28A-203ENST00000617445 PIM2Q9P1W9 311 aa25.3■■□□□ 1.64
CCDC28A-203ENST00000617445 BRCA1P38398 1863 aaKnown RBP25.3■■□□□ 1.64
CCDC28A-203ENST00000617445 KCNA3P22001 575 aa25.29■■□□□ 1.64
CCDC28A-203ENST00000617445 TAF7Q15545 349 aaPredicted RBP25.29■■□□□ 1.64
CCDC28A-203ENST00000617445 BCL2L12Q9HB09 334 aa25.29■■□□□ 1.64
CCDC28A-203ENST00000617445 KCNQ3O43525 872 aa25.28■■□□□ 1.64
CCDC28A-203ENST00000617445 SNRPA1P09661 255 aaKnown RBP25.28■■□□□ 1.64
CCDC28A-203ENST00000617445 PLEKHF1Q96S99 279 aa25.28■■□□□ 1.64
CCDC28A-203ENST00000617445 GIGYF1O75420 1035 aaPredicted RBP25.27■■□□□ 1.64
CCDC28A-203ENST00000617445 ADCY9O60503 1353 aa25.27■■□□□ 1.64
CCDC28A-203ENST00000617445 ATP10DQ9P241 1426 aa25.27■■□□□ 1.64
CCDC28A-203ENST00000617445 A1BGP04217 495 aa25.26■■□□□ 1.63
CCDC28A-203ENST00000617445 SERPINB2P05120 415 aa25.26■■□□□ 1.63
CCDC28A-203ENST00000617445 DCTN1Q14203 1278 aa25.26■■□□□ 1.63
CCDC28A-203ENST00000617445 PNISRQ8TF01 805 aaKnown RBP25.26■■□□□ 1.63
CCDC28A-203ENST00000617445 NRXN2Q9P2S2 1712 aa25.26■■□□□ 1.63
CCDC28A-203ENST00000617445 AFDNP55196 1824 aaKnown RBP25.26■■□□□ 1.63
CCDC28A-203ENST00000617445 ARFGEF1Q9Y6D6 1849 aa25.26■■□□□ 1.63
CCDC28A-203ENST00000617445 C1QTNF8P60827 252 aa25.25■■□□□ 1.63
CCDC28A-203ENST00000617445 DDX10Q13206 875 aaKnown RBP25.25■■□□□ 1.63
CCDC28A-203ENST00000617445 DALRD3Q5D0E6 543 aaKnown RBP25.25■■□□□ 1.63
CCDC28A-203ENST00000617445 DLG5Q8TDM6 1919 aa25.24■■□□□ 1.63
CCDC28A-203ENST00000617445 MAPK8IP3Q9UPT6 1336 aa25.24■■□□□ 1.63
CCDC28A-203ENST00000617445 NFE2L2Q16236 605 aa25.24■■□□□ 1.63
CCDC28A-203ENST00000617445 USP16Q9Y5T5 823 aa25.24■■□□□ 1.63
CCDC28A-203ENST00000617445 ARHGAP27Q6ZUM4 889 aa25.23■■□□□ 1.63
CCDC28A-203ENST00000617445 ZNF330Q9Y3S2 320 aaPredicted RBP25.23■■□□□ 1.63
CCDC28A-203ENST00000617445 GPBP1L1Q9HC44 474 aaPredicted RBP25.22■■□□□ 1.63
CCDC28A-203ENST00000617445 TBC1D2BQ9UPU7 963 aa25.22■■□□□ 1.63
CCDC28A-203ENST00000617445 CHRNA5P30532 468 aa25.2■■□□□ 1.62
CCDC28A-203ENST00000617445 PDZRN3Q9UPQ7 1066 aa25.2■■□□□ 1.62
CCDC28A-203ENST00000617445 SCN7AQ01118 1682 aa25.2■■□□□ 1.62
CCDC28A-203ENST00000617445 MYBBP1AQ9BQG0 1328 aaKnown RBP25.19■■□□□ 1.62
CCDC28A-203ENST00000617445 TBC1D9BQ66K14 1250 aa25.19■■□□□ 1.62
CCDC28A-203ENST00000617445 BICDL1Q6ZP65 573 aa25.19■■□□□ 1.62
CCDC28A-203ENST00000617445 RGL2O15211 777 aa25.18■■□□□ 1.62
CCDC28A-203ENST00000617445 CAMTA2O94983 1202 aa25.18■■□□□ 1.62
CCDC28A-203ENST00000617445 CLEC4GQ6UXB4 293 aa25.18■■□□□ 1.62
CCDC28A-203ENST00000617445 DZIP3Q86Y13 1208 aaKnown RBP25.18■■□□□ 1.62
CCDC28A-203ENST00000617445 SETDB2Q96T68 719 aa25.18■■□□□ 1.62
CCDC28A-203ENST00000617445 CARMIL3Q8ND23 1372 aa25.18■■□□□ 1.62
CCDC28A-203ENST00000617445 PRAMEF22A3QJZ6 481 aa25.16■■□□□ 1.62
CCDC28A-203ENST00000617445 H0YIN7 160 aa25.16■■□□□ 1.62
CCDC28A-203ENST00000617445 BRIP1Q9BX63 1249 aa25.15■■□□□ 1.62
CCDC28A-203ENST00000617445 MIS18AQ9NYP9 233 aa25.15■■□□□ 1.62
CCDC28A-203ENST00000617445 ZNF652Q9Y2D9 606 aa25.15■■□□□ 1.62
CCDC28A-203ENST00000617445 PDE6BP35913 854 aa25.14■■□□□ 1.62
CCDC28A-203ENST00000617445 KDM3BQ7LBC6 1761 aa25.13■■□□□ 1.61
CCDC28A-203ENST00000617445 DLEC1Q9Y238 1755 aa25.13■■□□□ 1.61
CCDC28A-203ENST00000617445 C2CD5Q86YS7 1000 aa25.13■■□□□ 1.61
CCDC28A-203ENST00000617445 TTLL6Q8N841 843 aa25.13■■□□□ 1.61
CCDC28A-203ENST00000617445 BCORQ6W2J9 1755 aa25.13■■□□□ 1.61
CCDC28A-203ENST00000617445 NBPF26B4DH59 902 aa25.12■■□□□ 1.61
CCDC28A-203ENST00000617445 EIF4A1P60842 406 aaKnown RBP25.12■■□□□ 1.61
CCDC28A-203ENST00000617445 LMOD3Q0VAK6 560 aa25.12■■□□□ 1.61
CCDC28A-203ENST00000617445 NBPF10Q6P3W6 841 aaKnown RBP25.12■■□□□ 1.61
CCDC28A-203ENST00000617445 NBPF15Q8N660 670 aa25.12■■□□□ 1.61
CCDC28A-203ENST00000617445 ZNF526Q8TF50 670 aaPredicted RBP25.12■■□□□ 1.61
CCDC28A-203ENST00000617445 PIP4K2AP48426 406 aaPredicted RBP25.11■■□□□ 1.61
CCDC28A-203ENST00000617445 RIPK4P57078 832 aa25.11■■□□□ 1.61
CCDC28A-203ENST00000617445 PRR5LQ6MZQ0 368 aa25.11■■□□□ 1.61
CCDC28A-203ENST00000617445 BABAM1Q9NWV8 329 aa25.11■■□□□ 1.61
CCDC28A-203ENST00000617445 LAMB4A4D0S4 1761 aa25.1■■□□□ 1.61
CCDC28A-203ENST00000617445 C9orf131Q5VYM1 1079 aa25.1■■□□□ 1.61
CCDC28A-203ENST00000617445 CNBD1Q8NA66 436 aa25.1■■□□□ 1.61
CCDC28A-203ENST00000617445 NPHP1O15259 732 aa25.09■■□□□ 1.61
CCDC28A-203ENST00000617445 ST5P78524 1137 aa25.09■■□□□ 1.61
CCDC28A-203ENST00000617445 THUMPD2Q9BTF0 503 aaKnown RBP25.09■■□□□ 1.61
CCDC28A-203ENST00000617445 TMPOP42166 694 aaKnown RBP25.08■■□□□ 1.61
CCDC28A-203ENST00000617445 SBF1O95248 1867 aa25.07■■□□□ 1.6
CCDC28A-203ENST00000617445 ANKRD31Q8N7Z5 1873 aa25.07■■□□□ 1.6
CCDC28A-203ENST00000617445 SENP3-EIF4A1A0A087X0R7 540 aa25.07■■□□□ 1.6
CCDC28A-203ENST00000617445 WDR43Q15061 677 aaKnown RBP eCLIP25.07■■□□□ 1.6
CCDC28A-203ENST00000617445 TPTE2Q6XPS3 522 aa25.05■■□□□ 1.6
CCDC28A-203ENST00000617445 NBPF5PQ86XG9 351 aaPredicted RBP25.05■■□□□ 1.6
CCDC28A-203ENST00000617445 PRKRIP1Q9H875 184 aaPredicted RBP25.05■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms