RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 JMYQ8N9B5 988 aa8.54□□□□□ -1.04
CUX1-220ENST00000607092 PANK3Q9H999 370 aa8.54□□□□□ -1.04
CUX1-220ENST00000607092 SLC52A2Q9HAB3 445 aa8.54□□□□□ -1.04
CUX1-220ENST00000607092 H0YIN7 160 aa8.53□□□□□ -1.04
CUX1-220ENST00000607092 POLRMTO00411 1230 aaKnown RBP8.53□□□□□ -1.04
CUX1-220ENST00000607092 VEGFAP15692 232 aaPredicted RBP8.53□□□□□ -1.04
CUX1-220ENST00000607092 TM4SF1P30408 202 aa8.53□□□□□ -1.04
CUX1-220ENST00000607092 DPY19L2Q6NUT2 758 aa8.53□□□□□ -1.04
CUX1-220ENST00000607092 TTLL6Q8N841 843 aa8.53□□□□□ -1.04
CUX1-220ENST00000607092 TEX13AQ9BXU3 409 aaPredicted RBP8.53□□□□□ -1.04
CUX1-220ENST00000607092 NARFQ9UHQ1 456 aa8.53□□□□□ -1.04
CUX1-220ENST00000607092 KIAA1551Q9HCM1 1747 aa8.53□□□□□ -1.04
CUX1-220ENST00000607092 N4BP2Q86UW6 1770 aaPredicted RBP8.53□□□□□ -1.04
CUX1-220ENST00000607092 DDR1Q08345 913 aa8.52□□□□□ -1.05
CUX1-220ENST00000607092 USPL1Q5W0Q7 1092 aa8.52□□□□□ -1.05
CUX1-220ENST00000607092 TTC5Q8N0Z6 440 aa8.52□□□□□ -1.05
CUX1-220ENST00000607092 RRAGCQ9HB90 399 aa8.52□□□□□ -1.05
CUX1-220ENST00000607092 TNRC6CQ9HCJ0 1690 aaKnown RBP8.52□□□□□ -1.05
CUX1-220ENST00000607092 SOS1Q07889 1333 aaPredicted RBP8.52□□□□□ -1.05
CUX1-220ENST00000607092 BRCA1P38398 1863 aaKnown RBP8.51□□□□□ -1.05
CUX1-220ENST00000607092 COL15A1P39059 1388 aa8.51□□□□□ -1.05
CUX1-220ENST00000607092 GLTPD2A6NH11 291 aa8.51□□□□□ -1.05
CUX1-220ENST00000607092 CYP19A1P11511 503 aaPredicted RBP8.51□□□□□ -1.05
CUX1-220ENST00000607092 PDE6BP35913 854 aa8.51□□□□□ -1.05
CUX1-220ENST00000607092 SOGA3Q5TF21 947 aa8.51□□□□□ -1.05
CUX1-220ENST00000607092 INTS5Q6P9B9 1019 aaKnown RBP8.51□□□□□ -1.05
CUX1-220ENST00000607092 SRP68Q9UHB9 627 aaKnown RBP8.51□□□□□ -1.05
CUX1-220ENST00000607092 WDR90Q96KV7 1748 aa8.51□□□□□ -1.05
CUX1-220ENST00000607092 KCPQ6ZWJ8 1503 aa8.5□□□□□ -1.05
CUX1-220ENST00000607092 SERPINB2P05120 415 aa8.5□□□□□ -1.05
CUX1-220ENST00000607092 CHRNA5P30532 468 aa8.5□□□□□ -1.05
CUX1-220ENST00000607092 IL13P35225 146 aa8.5□□□□□ -1.05
CUX1-220ENST00000607092 AEBP1Q8IUX7 1158 aa8.5□□□□□ -1.05
CUX1-220ENST00000607092 DNAJC10Q8IXB1 793 aa8.5□□□□□ -1.05
CUX1-220ENST00000607092 MYH14Q7Z406 1995 aaKnown RBP8.5□□□□□ -1.05
CUX1-220ENST00000607092 RNMTO43148 476 aaKnown RBP8.49□□□□□ -1.05
CUX1-220ENST00000607092 HSPA5P11021 654 aaKnown RBP8.49□□□□□ -1.05
CUX1-220ENST00000607092 TEFQ10587 303 aa8.49□□□□□ -1.05
CUX1-220ENST00000607092 NFIXQ14938 502 aa8.49□□□□□ -1.05
CUX1-220ENST00000607092 C2CD5Q86YS7 1000 aa8.49□□□□□ -1.05
CUX1-220ENST00000607092 GAS2L2Q8NHY3 880 aa8.49□□□□□ -1.05
CUX1-220ENST00000607092 BRIP1Q9BX63 1249 aa8.49□□□□□ -1.05
CUX1-220ENST00000607092 MRC1P22897 1456 aa8.49□□□□□ -1.05
CUX1-220ENST00000607092 NPHP1O15259 732 aa8.48□□□□□ -1.05
CUX1-220ENST00000607092 DIAPH1O60610 1272 aaKnown RBP8.48□□□□□ -1.05
CUX1-220ENST00000607092 TNS4Q8IZW8 715 aa8.48□□□□□ -1.05
CUX1-220ENST00000607092 TJP1Q07157 1748 aa8.48□□□□□ -1.05
CUX1-220ENST00000607092 LTBP3Q9NS15 1303 aa8.48□□□□□ -1.05
CUX1-220ENST00000607092 SCN11AQ9UI33 1791 aa8.48□□□□□ -1.05
CUX1-220ENST00000607092 CARMIL3Q8ND23 1372 aa8.48□□□□□ -1.05
CUX1-220ENST00000607092 IQCA1LA6NCM1 817 aa8.47□□□□□ -1.05
CUX1-220ENST00000607092 RGL2O15211 777 aa8.47□□□□□ -1.05
CUX1-220ENST00000607092 IL6STP40189 918 aaPredicted RBP8.47□□□□□ -1.05
CUX1-220ENST00000607092 EIF5P55010 431 aaKnown RBP8.47□□□□□ -1.05
CUX1-220ENST00000607092 ST5P78524 1137 aa8.47□□□□□ -1.05
CUX1-220ENST00000607092 CNKSR1Q969H4 720 aa8.47□□□□□ -1.05
CUX1-220ENST00000607092 ZBTB1Q9Y2K1 713 aa8.47□□□□□ -1.05
CUX1-220ENST00000607092 PCNTO95613 3336 aa8.46□□□□□ -1.05
CUX1-220ENST00000607092 GNAT3A8MTJ3 354 aa8.46□□□□□ -1.06
CUX1-220ENST00000607092 CANXP27824 592 aaKnown RBP8.46□□□□□ -1.06
CUX1-220ENST00000607092 PRELPP51888 382 aa8.46□□□□□ -1.06
CUX1-220ENST00000607092 ERFEQ4G0M1 354 aa8.46□□□□□ -1.06
CUX1-220ENST00000607092 ZNF622Q969S3 477 aaKnown RBP eCLIP8.46□□□□□ -1.065e-16■□□□□ 9.9
CUX1-220ENST00000607092 FMNL2Q96PY5 1086 aa8.46□□□□□ -1.06
CUX1-220ENST00000607092 SETDB2Q96T68 719 aa8.46□□□□□ -1.06
CUX1-220ENST00000607092 TAOK3Q9H2K8 898 aa8.46□□□□□ -1.06
CUX1-220ENST00000607092 LGR6Q9HBX8 967 aa8.46□□□□□ -1.06
CUX1-220ENST00000607092 ZNF652Q9Y2D9 606 aa8.46□□□□□ -1.06
CUX1-220ENST00000607092 NRXN2Q9P2S2 1712 aa8.46□□□□□ -1.06
CUX1-220ENST00000607092 NFKBIEO00221 500 aa8.45□□□□□ -1.06
CUX1-220ENST00000607092 HMOX1P09601 288 aa8.45□□□□□ -1.06
CUX1-220ENST00000607092 RASSF7Q02833 373 aa8.45□□□□□ -1.06
CUX1-220ENST00000607092 SLC39A6Q13433 755 aa8.45□□□□□ -1.06
CUX1-220ENST00000607092 MTHFSDQ2M296 383 aaKnown RBP8.45□□□□□ -1.06
CUX1-220ENST00000607092 STYK1Q6J9G0 422 aa8.45□□□□□ -1.06
CUX1-220ENST00000607092 CHADLQ6NUI6 762 aa8.45□□□□□ -1.06
CUX1-220ENST00000607092 ZNF790Q6PG37 636 aa8.45□□□□□ -1.06
CUX1-220ENST00000607092 CLEC4GQ6UXB4 293 aa8.45□□□□□ -1.06
CUX1-220ENST00000607092 CNBD1Q8NA66 436 aa8.45□□□□□ -1.06
CUX1-220ENST00000607092 PCGF6Q9BYE7 350 aa8.45□□□□□ -1.06
CUX1-220ENST00000607092 CREBZFQ9NS37 354 aa8.45□□□□□ -1.06
CUX1-220ENST00000607092 SBF1O95248 1867 aa8.45□□□□□ -1.06
CUX1-220ENST00000607092 ADAMTS7Q9UKP4 1686 aa8.44□□□□□ -1.06
CUX1-220ENST00000607092 DLEC1Q9Y238 1755 aa8.44□□□□□ -1.06
CUX1-220ENST00000607092 COL13A1Q5TAT6 717 aaPredicted RBP8.44□□□□□ -1.06
CUX1-220ENST00000607092 BICDL1Q6ZP65 573 aa8.44□□□□□ -1.06
CUX1-220ENST00000607092 MASTLQ96GX5 879 aa8.44□□□□□ -1.06
CUX1-220ENST00000607092 CFAP53Q96M91 514 aa8.44□□□□□ -1.06
CUX1-220ENST00000607092 BCL2L12Q9HB09 334 aa8.44□□□□□ -1.06
CUX1-220ENST00000607092 NPC1L1Q9UHC9 1359 aa8.44□□□□□ -1.06
CUX1-220ENST00000607092 HEG1Q9ULI3 1381 aa8.44□□□□□ -1.06
CUX1-220ENST00000607092 C21orf2O43822 256 aa8.43□□□□□ -1.06
CUX1-220ENST00000607092 HSPA1AP0DMV8 641 aaKnown RBP8.43□□□□□ -1.06
CUX1-220ENST00000607092 HSPA1BP0DMV9 641 aaKnown RBP8.43□□□□□ -1.06
CUX1-220ENST00000607092 HTRA3P83110 453 aa8.43□□□□□ -1.06
CUX1-220ENST00000607092 PRR5LQ6MZQ0 368 aa8.43□□□□□ -1.06
CUX1-220ENST00000607092 AIDAQ96BJ3 306 aa8.43□□□□□ -1.06
CUX1-220ENST00000607092 NUDCQ9Y266 331 aa8.43□□□□□ -1.06
CUX1-220ENST00000607092 ZNF330Q9Y3S2 320 aaPredicted RBP8.43□□□□□ -1.06
CUX1-220ENST00000607092 SPDYE4A6NLX3 237 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 100 ms