RNA–Protein interactions for RNA: ENST00000606000.1

CTSA-210, Transcript of cathepsin A, humanhuman

TSL 3

Gene CTSA, Length 644 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-210ENST00000606000 PRAMEF22A3QJZ6 481 aa16.33■□□□□ 0.2
CTSA-210ENST00000606000 ZEB1P37275 1124 aaPredicted RBP16.33■□□□□ 0.2
CTSA-210ENST00000606000 FKBP8Q14318 412 aa16.33■□□□□ 0.2
CTSA-210ENST00000606000 THUMPD2Q9BTF0 503 aaKnown RBP16.33■□□□□ 0.2
CTSA-210ENST00000606000 CD2APQ9Y5K6 639 aa16.33■□□□□ 0.2
CTSA-210ENST00000606000 SCN7AQ01118 1682 aa16.33■□□□□ 0.2
CTSA-210ENST00000606000 CANXP27824 592 aaKnown RBP16.32■□□□□ 0.2
CTSA-210ENST00000606000 USPL1Q5W0Q7 1092 aa16.32■□□□□ 0.2
CTSA-210ENST00000606000 C10orf71Q711Q0 1435 aa16.32■□□□□ 0.2
CTSA-210ENST00000606000 CHD4Q14839 1912 aa16.31■□□□□ 0.2
CTSA-210ENST00000606000 LAMB4A4D0S4 1761 aa16.31■□□□□ 0.2
CTSA-210ENST00000606000 PXDNLA1KZ92 1463 aa16.31■□□□□ 0.2
CTSA-210ENST00000606000 MAPK8IP3Q9UPT6 1336 aa16.31■□□□□ 0.2
CTSA-210ENST00000606000 DDR1Q08345 913 aa16.31■□□□□ 0.2
CTSA-210ENST00000606000 NFE2L2Q16236 605 aa16.31■□□□□ 0.2
CTSA-210ENST00000606000 NLGN1Q8N2Q7 840 aa16.31■□□□□ 0.2
CTSA-210ENST00000606000 FMNL2Q96PY5 1086 aa16.31■□□□□ 0.2
CTSA-210ENST00000606000 PRKRIP1Q9H875 184 aaPredicted RBP16.31■□□□□ 0.2
CTSA-210ENST00000606000 MIS18AQ9NYP9 233 aa16.31■□□□□ 0.2
CTSA-210ENST00000606000 HTATSF1O43719 755 aaKnown RBP16.3■□□□□ 0.2
CTSA-210ENST00000606000 NEFMP07197 916 aa16.3■□□□□ 0.2
CTSA-210ENST00000606000 PIP4K2AP48426 406 aaPredicted RBP16.3■□□□□ 0.2
CTSA-210ENST00000606000 CCDC146Q8IYE0 955 aa16.3■□□□□ 0.2
CTSA-210ENST00000606000 AFDNP55196 1824 aaKnown RBP16.3■□□□□ 0.2
CTSA-210ENST00000606000 BCORQ6W2J9 1755 aa16.29■□□□□ 0.2
CTSA-210ENST00000606000 BCL2L12Q9HB09 334 aa16.29■□□□□ 0.2
CTSA-210ENST00000606000 STARD3NLO95772 234 aa16.28■□□□□ 0.2
CTSA-210ENST00000606000 A1BGP04217 495 aa16.28■□□□□ 0.2
CTSA-210ENST00000606000 ZNF330Q9Y3S2 320 aaPredicted RBP16.28■□□□□ 0.2
CTSA-210ENST00000606000 USP16Q9Y5T5 823 aa16.28■□□□□ 0.2
CTSA-210ENST00000606000 BRCA1P38398 1863 aaKnown RBP16.28■□□□□ 0.2
CTSA-210ENST00000606000 NRXN2Q9P2S2 1712 aa16.28■□□□□ 0.2
CTSA-210ENST00000606000 ZPR1O75312 459 aa16.27■□□□□ 0.2
CTSA-210ENST00000606000 EIF5P55010 431 aaKnown RBP16.27■□□□□ 0.2
CTSA-210ENST00000606000 NARFQ9UHQ1 456 aa16.27■□□□□ 0.2
CTSA-210ENST00000606000 RRP7AQ9Y3A4 280 aaKnown RBP16.27■□□□□ 0.2
CTSA-210ENST00000606000 PARP3Q9Y6F1 533 aa16.27■□□□□ 0.2
CTSA-210ENST00000606000 POLRMTO00411 1230 aaKnown RBP16.26■□□□□ 0.19
CTSA-210ENST00000606000 TAF7Q15545 349 aaPredicted RBP16.26■□□□□ 0.19
CTSA-210ENST00000606000 TM4SF1P30408 202 aa16.25■□□□□ 0.19
CTSA-210ENST00000606000 NFIXQ14938 502 aa16.25■□□□□ 0.19
CTSA-210ENST00000606000 TEX13AQ9BXU3 409 aaPredicted RBP16.25■□□□□ 0.19
CTSA-210ENST00000606000 PNNQ9H307 717 aaKnown RBP16.25■□□□□ 0.19
CTSA-210ENST00000606000 A0A0G2JLW4 131 aa16.24■□□□□ 0.19
CTSA-210ENST00000606000 TMPOP42166 694 aaKnown RBP16.24■□□□□ 0.19
CTSA-210ENST00000606000 RIPK4P57078 832 aa16.24■□□□□ 0.19
CTSA-210ENST00000606000 WDR43Q15061 677 aaKnown RBP eCLIP16.24■□□□□ 0.19
CTSA-210ENST00000606000 ADAMTS8Q9UP79 889 aa16.24■□□□□ 0.19
CTSA-210ENST00000606000 TBC1D2BQ9UPU7 963 aa16.24■□□□□ 0.19
CTSA-210ENST00000606000 UTRNP46939 3433 aa16.24■□□□□ 0.19
CTSA-210ENST00000606000 ZNF316A6NFI3 1004 aaPredicted RBP16.23■□□□□ 0.19
CTSA-210ENST00000606000 SNRPA1P09661 255 aaKnown RBP16.23■□□□□ 0.19
CTSA-210ENST00000606000 IL6STP40189 918 aaPredicted RBP16.23■□□□□ 0.19
CTSA-210ENST00000606000 NEUROD2Q15784 382 aa16.23■□□□□ 0.19
CTSA-210ENST00000606000 CCDC184Q52MB2 194 aa16.23■□□□□ 0.19
CTSA-210ENST00000606000 BICDL1Q6ZP65 573 aa16.23■□□□□ 0.19
CTSA-210ENST00000606000 CARMIL3Q8ND23 1372 aa16.23■□□□□ 0.19
CTSA-210ENST00000606000 NBPF26B4DH59 902 aa16.22■□□□□ 0.19
CTSA-210ENST00000606000 DPEP1P16444 411 aa16.22■□□□□ 0.19
CTSA-210ENST00000606000 NBPF10Q6P3W6 841 aaKnown RBP16.22■□□□□ 0.19
CTSA-210ENST00000606000 NBPF15Q8N660 670 aa16.22■□□□□ 0.19
CTSA-210ENST00000606000 DLEC1Q9Y238 1755 aa16.21■□□□□ 0.19
CTSA-210ENST00000606000 ANKRD31Q8N7Z5 1873 aa16.21■□□□□ 0.19
CTSA-210ENST00000606000 EIF4A1P60842 406 aaKnown RBP16.21■□□□□ 0.19
CTSA-210ENST00000606000 TBC1D9BQ66K14 1250 aa16.21■□□□□ 0.19
CTSA-210ENST00000606000 A0A087WZG4 1122 aa16.2■□□□□ 0.18
CTSA-210ENST00000606000 GRIN3BO60391 1043 aa16.2■□□□□ 0.18
CTSA-210ENST00000606000 CAMTA2O94983 1202 aa16.2■□□□□ 0.18
CTSA-210ENST00000606000 KCNA3P22001 575 aa16.2■□□□□ 0.18
CTSA-210ENST00000606000 CHRNA5P30532 468 aa16.2■□□□□ 0.18
CTSA-210ENST00000606000 TGFB2P61812 414 aa16.2■□□□□ 0.18
CTSA-210ENST00000606000 PNISRQ8TF01 805 aaKnown RBP16.2■□□□□ 0.18
CTSA-210ENST00000606000 RUNDC1Q96C34 613 aa16.2■□□□□ 0.18
CTSA-210ENST00000606000 GOLGB1Q14789 3259 aaKnown RBP16.2■□□□□ 0.18
CTSA-210ENST00000606000 COL11A2P13942 1736 aaPredicted RBP16.19■□□□□ 0.18
CTSA-210ENST00000606000 SERPINB2P05120 415 aa16.19■□□□□ 0.18
CTSA-210ENST00000606000 DZIP3Q86Y13 1208 aaKnown RBP16.19■□□□□ 0.18
CTSA-210ENST00000606000 ZNF784Q8NCA9 323 aaPredicted RBP16.19■□□□□ 0.18
CTSA-210ENST00000606000 TRIM35Q9UPQ4 493 aa16.19■□□□□ 0.18
CTSA-210ENST00000606000 ARFGEF1Q9Y6D6 1849 aa16.19■□□□□ 0.18
CTSA-210ENST00000606000 GIGYF1O75420 1035 aaPredicted RBP16.18■□□□□ 0.18
CTSA-210ENST00000606000 CCDC24Q8N4L8 307 aa16.18■□□□□ 0.18
CTSA-210ENST00000606000 TSPYL4Q9UJ04 414 aa16.18■□□□□ 0.18
CTSA-210ENST00000606000 BCS1LQ9Y276 419 aa16.18■□□□□ 0.18
CTSA-210ENST00000606000 LMOD3Q0VAK6 560 aa16.16■□□□□ 0.18
CTSA-210ENST00000606000 SENP3-EIF4A1A0A087X0R7 540 aa16.15■□□□□ 0.18
CTSA-210ENST00000606000 NPM2Q86SE8 214 aaKnown RBP16.15■□□□□ 0.18
CTSA-210ENST00000606000 NGEFQ8N5V2 710 aa16.15■□□□□ 0.18
CTSA-210ENST00000606000 KRT24Q2M2I5 525 aa16.14■□□□□ 0.17
CTSA-210ENST00000606000 PRR5LQ6MZQ0 368 aa16.14■□□□□ 0.17
CTSA-210ENST00000606000 LAS1LQ9Y4W2 734 aaKnown RBP16.14■□□□□ 0.17
CTSA-210ENST00000606000 CACNA1SQ13698 1873 aa16.14■□□□□ 0.17
CTSA-210ENST00000606000 NUP98P52948 1817 aa16.13■□□□□ 0.17
CTSA-210ENST00000606000 APAF1O14727 1248 aa16.13■□□□□ 0.17
CTSA-210ENST00000606000 MYL6BP14649 208 aa16.13■□□□□ 0.17
CTSA-210ENST00000606000 ADCY9O60503 1353 aa16.13■□□□□ 0.17
CTSA-210ENST00000606000 ATP10DQ9P241 1426 aa16.12■□□□□ 0.17
CTSA-210ENST00000606000 HLFQ16534 295 aa16.12■□□□□ 0.17
CTSA-210ENST00000606000 PIM2Q9P1W9 311 aa16.12■□□□□ 0.17
CTSA-210ENST00000606000 TNRC6CQ9HCJ0 1690 aaKnown RBP16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms