RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 MCM5P33992 734 aa22.16■■□□□ 1.14
UPF1-210ENST00000600689 PNMA6EA0A0J9YXQ4 647 aa22.16■■□□□ 1.14
UPF1-210ENST00000600689 GIMAP6Q6P9H5 292 aa22.16■■□□□ 1.14
UPF1-210ENST00000600689 A0A0U1RQG5 324 aaPredicted RBP22.15■■□□□ 1.14
UPF1-210ENST00000600689 USP31Q70CQ4 1352 aa22.15■■□□□ 1.14
UPF1-210ENST00000600689 MX1P20591 662 aa22.15■■□□□ 1.14
UPF1-210ENST00000600689 SRCIN1Q9C0H9 1055 aa22.15■■□□□ 1.14
UPF1-210ENST00000600689 NALCNQ8IZF0 1738 aa22.14■■□□□ 1.13
UPF1-210ENST00000600689 CHMLP26374 656 aa22.13■■□□□ 1.13
UPF1-210ENST00000600689 LRRCC1Q9C099 1032 aa22.13■■□□□ 1.13
UPF1-210ENST00000600689 NLRP6P59044 892 aa22.12■■□□□ 1.13
UPF1-210ENST00000600689 FKBP5Q13451 457 aaPredicted RBP22.12■■□□□ 1.13
UPF1-210ENST00000600689 TSPYL4Q9UJ04 414 aa22.12■■□□□ 1.13
UPF1-210ENST00000600689 RIMS1Q86UR5 1692 aaKnown RBP22.12■■□□□ 1.13
UPF1-210ENST00000600689 PPP4R3BQ5MIZ7 849 aa22.12■■□□□ 1.13
UPF1-210ENST00000600689 ZNF710Q8N1W2 664 aa22.12■■□□□ 1.13
UPF1-210ENST00000600689 MYRIPQ8NFW9 859 aa22.12■■□□□ 1.13
UPF1-210ENST00000600689 AMPHP49418 695 aa22.11■■□□□ 1.13
UPF1-210ENST00000600689 PHF14O94880 888 aa22.11■■□□□ 1.13
UPF1-210ENST00000600689 TTC21AQ8NDW8 1320 aa22.11■■□□□ 1.13
UPF1-210ENST00000600689 GNAI2P04899 355 aa22.1■■□□□ 1.13
UPF1-210ENST00000600689 MTHFSDQ2M296 383 aaKnown RBP22.1■■□□□ 1.13
UPF1-210ENST00000600689 CCDC94Q9BW85 323 aaPredicted RBP22.1■■□□□ 1.13
UPF1-210ENST00000600689 CUL4AQ13619 759 aa22.09■■□□□ 1.13
UPF1-210ENST00000600689 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.09■■□□□ 1.13
UPF1-210ENST00000600689 RGS12O14924 1447 aa22.08■■□□□ 1.13
UPF1-210ENST00000600689 WDR33Q9C0J8 1336 aaKnown RBP22.08■■□□□ 1.13
UPF1-210ENST00000600689 CHL1O00533 1208 aa22.08■■□□□ 1.13
UPF1-210ENST00000600689 PIBF1Q8WXW3 757 aa22.08■■□□□ 1.13
UPF1-210ENST00000600689 EYA1Q99502 592 aa22.08■■□□□ 1.13
UPF1-210ENST00000600689 MCM2P49736 904 aa22.08■■□□□ 1.13
UPF1-210ENST00000600689 LRRFIP2Q9Y608 721 aaKnown RBP22.08■■□□□ 1.13
UPF1-210ENST00000600689 RGPD1P0DJD0 1748 aa22.08■■□□□ 1.12
UPF1-210ENST00000600689 PIK3C2AO00443 1686 aa22.08■■□□□ 1.12
UPF1-210ENST00000600689 C14orf37Q86TY3 774 aa22.08■■□□□ 1.12
UPF1-210ENST00000600689 XRN1Q8IZH2 1706 aaKnown RBP22.07■■□□□ 1.12
UPF1-210ENST00000600689 MTERF4Q7Z6M4 381 aaKnown RBP22.07■■□□□ 1.12
UPF1-210ENST00000600689 SPG7Q9UQ90 795 aa22.07■■□□□ 1.12
UPF1-210ENST00000600689 ATP2B3Q16720 1220 aa22.07■■□□□ 1.12
UPF1-210ENST00000600689 FLT4P35916 1363 aa22.07■■□□□ 1.12
UPF1-210ENST00000600689 CCDC183Q5T5S1 534 aa22.06■■□□□ 1.12
UPF1-210ENST00000600689 SMAP1Q8IYB5 467 aaPredicted RBP22.06■■□□□ 1.12
UPF1-210ENST00000600689 PYCARDQ9ULZ3 195 aa22.06■■□□□ 1.12
UPF1-210ENST00000600689 KIF3AQ9Y496 699 aa22.06■■□□□ 1.12
UPF1-210ENST00000600689 VPS37CA5D8V6 355 aaPredicted RBP22.06■■□□□ 1.12
UPF1-210ENST00000600689 RTF1Q92541 710 aaKnown RBP22.06■■□□□ 1.12
UPF1-210ENST00000600689 LTV1Q96GA3 475 aaPredicted RBP22.06■■□□□ 1.12
UPF1-210ENST00000600689 SBNO1A3KN83 1393 aa22.06■■□□□ 1.12
UPF1-210ENST00000600689 CAMK4Q16566 473 aa22.05■■□□□ 1.12
UPF1-210ENST00000600689 ABTB2Q8N961 1025 aa22.05■■□□□ 1.12
UPF1-210ENST00000600689 CEP170BQ9Y4F5 1589 aaPredicted RBP22.05■■□□□ 1.12
UPF1-210ENST00000600689 CWC27Q6UX04 472 aaKnown RBP22.05■■□□□ 1.12
UPF1-210ENST00000600689 STK31Q9BXU1 1019 aa22.05■■□□□ 1.12
UPF1-210ENST00000600689 AP5Z1O43299 807 aa22.04■■□□□ 1.12
UPF1-210ENST00000600689 DNM1Q05193 864 aaKnown RBP22.04■■□□□ 1.12
UPF1-210ENST00000600689 FERMT3Q86UX7 667 aa22.04■■□□□ 1.12
UPF1-210ENST00000600689 CCDC83Q8IWF9 413 aa22.04■■□□□ 1.12
UPF1-210ENST00000600689 BCL2L12Q9HB09 334 aa22.04■■□□□ 1.12
UPF1-210ENST00000600689 PTPRCP08575 1304 aa22.04■■□□□ 1.12
UPF1-210ENST00000600689 FMN2Q9NZ56 1722 aa22.04■■□□□ 1.12
UPF1-210ENST00000600689 SYT1P21579 422 aa22.03■■□□□ 1.12
UPF1-210ENST00000600689 FAM173BQ6P4H8 233 aa22.03■■□□□ 1.12
UPF1-210ENST00000600689 SMC3Q9UQE7 1217 aa22.03■■□□□ 1.12
UPF1-210ENST00000600689 AK2P54819 239 aa22.03■■□□□ 1.12
UPF1-210ENST00000600689 RASEFQ8IZ41 740 aa22.03■■□□□ 1.12
UPF1-210ENST00000600689 PLEKHG5O94827 1062 aa22.03■■□□□ 1.12
UPF1-210ENST00000600689 INTS4Q96HW7 963 aaKnown RBP22.03■■□□□ 1.12
UPF1-210ENST00000600689 ARHGEF10O15013 1369 aa22.02■■□□□ 1.12
UPF1-210ENST00000600689 SURF6O75683 361 aaKnown RBP22.02■■□□□ 1.12
UPF1-210ENST00000600689 LARGE1O95461 756 aa22.02■■□□□ 1.12
UPF1-210ENST00000600689 OSBPL3Q9H4L5 887 aa22.02■■□□□ 1.12
UPF1-210ENST00000600689 CRB1P82279 1406 aa22.02■■□□□ 1.12
UPF1-210ENST00000600689 STX6O43752 255 aa22.02■■□□□ 1.12
UPF1-210ENST00000600689 U2AF2P26368 475 aaKnown RBP eCLIP22.02■■□□□ 1.12
UPF1-210ENST00000600689 HAP1P54257 671 aaPredicted RBP22.02■■□□□ 1.12
UPF1-210ENST00000600689 KDM4AO75164 1064 aa22.01■■□□□ 1.11
UPF1-210ENST00000600689 ZSCAN22P10073 491 aaPredicted RBP22.01■■□□□ 1.11
UPF1-210ENST00000600689 CCT4P50991 539 aaKnown RBP22.01■■□□□ 1.11
UPF1-210ENST00000600689 RIOK3O14730 519 aaKnown RBP22■■□□□ 1.11
UPF1-210ENST00000600689 HOXC9P31274 260 aa22■■□□□ 1.11
UPF1-210ENST00000600689 KIF24Q5T7B8 1368 aa22■■□□□ 1.11
UPF1-210ENST00000600689 DRC7Q8IY82 874 aa22■■□□□ 1.11
UPF1-210ENST00000600689 PODXL2Q9NZ53 605 aa22■■□□□ 1.11
UPF1-210ENST00000600689 IGSF1Q8N6C5 1336 aa22■■□□□ 1.11
UPF1-210ENST00000600689 USHBP1Q8N6Y0 703 aa22■■□□□ 1.11
UPF1-210ENST00000600689 NECAB1Q8N987 351 aa22■■□□□ 1.11
UPF1-210ENST00000600689 ZSCAN20P17040 1043 aaPredicted RBP21.99■■□□□ 1.11
UPF1-210ENST00000600689 CASTP20810 708 aaKnown RBP21.99■■□□□ 1.11
UPF1-210ENST00000600689 HMGN5P82970 282 aaKnown RBP21.99■■□□□ 1.11
UPF1-210ENST00000600689 FLIIQ13045 1269 aa21.99■■□□□ 1.11
UPF1-210ENST00000600689 FAM184AQ8NB25 1140 aa21.99■■□□□ 1.11
UPF1-210ENST00000600689 RPAP1Q9BWH6 1393 aaPredicted RBP21.99■■□□□ 1.11
UPF1-210ENST00000600689 ANKLE2Q86XL3 938 aa21.99■■□□□ 1.11
UPF1-210ENST00000600689 PDCL2Q8N4E4 241 aa21.99■■□□□ 1.11
UPF1-210ENST00000600689 PRIMPOLQ96LW4 560 aa21.99■■□□□ 1.11
UPF1-210ENST00000600689 KDRP35968 1356 aa21.98■■□□□ 1.11
UPF1-210ENST00000600689 CKAP2LQ8IYA6 745 aa21.98■■□□□ 1.11
UPF1-210ENST00000600689 RUFY3Q7L099 469 aa21.98■■□□□ 1.11
UPF1-210ENST00000600689 KCNF1Q9H3M0 494 aa21.98■■□□□ 1.11
UPF1-210ENST00000600689 SNX14Q9Y5W7 946 aa21.98■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 90.4 ms