RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 C20orf194Q5TEA3 1177 aa18.71■□□□□ 0.59
VRK3-212ENST00000596814 DBF4Q9UBU7 674 aaPredicted RBP18.71■□□□□ 0.59
VRK3-212ENST00000596814 USP16Q9Y5T5 823 aa18.71■□□□□ 0.59
VRK3-212ENST00000596814 ZNF831Q5JPB2 1677 aa18.7■□□□□ 0.58
VRK3-212ENST00000596814 TRIM27P14373 513 aa18.7■□□□□ 0.58
VRK3-212ENST00000596814 PDE3AQ14432 1141 aa18.7■□□□□ 0.58
VRK3-212ENST00000596814 PTF1AQ7RTS3 328 aa18.7■□□□□ 0.58
VRK3-212ENST00000596814 ARHGAP45Q92619 1136 aa18.7■□□□□ 0.58
VRK3-212ENST00000596814 PTPRCP08575 1304 aa18.7■□□□□ 0.58
VRK3-212ENST00000596814 MS4A1P11836 297 aa18.69■□□□□ 0.58
VRK3-212ENST00000596814 FTSJ3Q8IY81 847 aaKnown RBP18.69■□□□□ 0.58
VRK3-212ENST00000596814 TEX13AQ9BXU3 409 aaPredicted RBP18.69■□□□□ 0.58
VRK3-212ENST00000596814 G2E3Q7L622 706 aa18.69■□□□□ 0.58
VRK3-212ENST00000596814 SLC4A9Q96Q91 983 aa18.69■□□□□ 0.58
VRK3-212ENST00000596814 BCL11BQ9C0K0 894 aaPredicted RBP18.69■□□□□ 0.58
VRK3-212ENST00000596814 DDX21Q9NR30 783 aaKnown RBP eCLIP18.69■□□□□ 0.58
VRK3-212ENST00000596814 TNNQ9UQP3 1299 aa18.69■□□□□ 0.58
VRK3-212ENST00000596814 ERBB4Q15303 1308 aa18.68■□□□□ 0.58
VRK3-212ENST00000596814 LY75O60449 1722 aa18.68■□□□□ 0.58
VRK3-212ENST00000596814 LOC102724428A0A0B4J2F2 783 aa18.68■□□□□ 0.58
VRK3-212ENST00000596814 SIK1P57059 783 aa18.68■□□□□ 0.58
VRK3-212ENST00000596814 FLIIQ13045 1269 aa18.68■□□□□ 0.58
VRK3-212ENST00000596814 DNAJC10Q8IXB1 793 aa18.68■□□□□ 0.58
VRK3-212ENST00000596814 DZIP1LQ8IYY4 767 aaKnown RBP18.68■□□□□ 0.58
VRK3-212ENST00000596814 CLUAP1Q96AJ1 413 aa18.68■□□□□ 0.58
VRK3-212ENST00000596814 API5Q9BZZ5 524 aaKnown RBP18.68■□□□□ 0.58
VRK3-212ENST00000596814 ANXA1P04083 346 aa18.67■□□□□ 0.58
VRK3-212ENST00000596814 PANK1Q8TE04 598 aa18.67■□□□□ 0.58
VRK3-212ENST00000596814 HYPKQ9NX55 129 aa18.67■□□□□ 0.58
VRK3-212ENST00000596814 PDIA6Q15084 440 aa18.66■□□□□ 0.58
VRK3-212ENST00000596814 PROSER3Q2NL68 480 aa18.66■□□□□ 0.58
VRK3-212ENST00000596814 COL5A3P25940 1745 aaPredicted RBP18.66■□□□□ 0.58
VRK3-212ENST00000596814 STARD3NLO95772 234 aa18.66■□□□□ 0.58
VRK3-212ENST00000596814 RLBP1P12271 317 aa18.66■□□□□ 0.58
VRK3-212ENST00000596814 CRBNQ96SW2 442 aa18.66■□□□□ 0.58
VRK3-212ENST00000596814 PHAXQ9H814 394 aaKnown RBP18.66■□□□□ 0.58
VRK3-212ENST00000596814 ABCC4O15439 1325 aa18.65■□□□□ 0.58
VRK3-212ENST00000596814 ATP6V1AP38606 617 aa18.65■□□□□ 0.58
VRK3-212ENST00000596814 FKBP5Q13451 457 aaPredicted RBP18.65■□□□□ 0.58
VRK3-212ENST00000596814 TRIM37O94972 964 aa18.64■□□□□ 0.57
VRK3-212ENST00000596814 MYL6BP14649 208 aa18.64■□□□□ 0.57
VRK3-212ENST00000596814 ERICH6BQ5W0A0 696 aa18.64■□□□□ 0.57
VRK3-212ENST00000596814 N4BP2Q86UW6 1770 aaPredicted RBP18.64■□□□□ 0.57
VRK3-212ENST00000596814 EP400Q96L91 3159 aa18.63■□□□□ 0.57
VRK3-212ENST00000596814 A1BGP04217 495 aa18.63■□□□□ 0.57
VRK3-212ENST00000596814 PIP4K2AP48426 406 aaPredicted RBP18.63■□□□□ 0.57
VRK3-212ENST00000596814 RREB1Q92766 1687 aa18.63■□□□□ 0.57
VRK3-212ENST00000596814 CYP19A1P11511 503 aaPredicted RBP18.63■□□□□ 0.57
VRK3-212ENST00000596814 EXOC6Q8TAG9 804 aa18.63■□□□□ 0.57
VRK3-212ENST00000596814 COG6Q9Y2V7 657 aa18.63■□□□□ 0.57
VRK3-212ENST00000596814 NBPF26B4DH59 902 aa18.62■□□□□ 0.57
VRK3-212ENST00000596814 ITPK1Q13572 414 aa18.62■□□□□ 0.57
VRK3-212ENST00000596814 NBPF14Q5TI25 921 aa18.62■□□□□ 0.57
VRK3-212ENST00000596814 NBPF10Q6P3W6 841 aaKnown RBP18.62■□□□□ 0.57
VRK3-212ENST00000596814 LRP10Q7Z4F1 713 aa18.62■□□□□ 0.57
VRK3-212ENST00000596814 TMEM57Q8N5G2 664 aa18.62■□□□□ 0.57
VRK3-212ENST00000596814 NBPF15Q8N660 670 aa18.62■□□□□ 0.57
VRK3-212ENST00000596814 TNS1Q9HBL0 1735 aaKnown RBP18.62■□□□□ 0.57
VRK3-212ENST00000596814 PXDNLA1KZ92 1463 aa18.62■□□□□ 0.57
VRK3-212ENST00000596814 MVPQ14764 893 aaKnown RBP18.61■□□□□ 0.57
VRK3-212ENST00000596814 ITPRIPQ8IWB1 547 aa18.6■□□□□ 0.57
VRK3-212ENST00000596814 TAF1LQ8IZX4 1826 aa18.6■□□□□ 0.57
VRK3-212ENST00000596814 F6X3S4 739 aa18.6■□□□□ 0.57
VRK3-212ENST00000596814 DDX58O95786 925 aaKnown RBP18.6■□□□□ 0.57
VRK3-212ENST00000596814 XAGE3Q8WTP9 111 aa18.6■□□□□ 0.57
VRK3-212ENST00000596814 AIMP1Q12904 312 aaKnown RBP18.59■□□□□ 0.57
VRK3-212ENST00000596814 CCNL1Q9UK58 526 aaPredicted RBP18.59■□□□□ 0.57
VRK3-212ENST00000596814 ADCY9O60503 1353 aa18.59■□□□□ 0.57
VRK3-212ENST00000596814 MYH14Q7Z406 1995 aaKnown RBP18.59■□□□□ 0.57
VRK3-212ENST00000596814 ARFGEF2Q9Y6D5 1785 aa18.58■□□□□ 0.57
VRK3-212ENST00000596814 COPS6Q7L5N1 327 aa18.58■□□□□ 0.57
VRK3-212ENST00000596814 ZBTB1Q9Y2K1 713 aa18.58■□□□□ 0.57
VRK3-212ENST00000596814 PI4KAP2A4QPH2 592 aa18.57■□□□□ 0.56
VRK3-212ENST00000596814 CRKLP46109 303 aaKnown RBP18.57■□□□□ 0.56
VRK3-212ENST00000596814 SLC4A10Q6U841 1118 aa18.57■□□□□ 0.56
VRK3-212ENST00000596814 PI4KAP1Q8N8J0 262 aa18.57■□□□□ 0.56
VRK3-212ENST00000596814 CCDC87Q9NVE4 849 aa18.57■□□□□ 0.56
VRK3-212ENST00000596814 DDX19BQ9UMR2 479 aa18.57■□□□□ 0.56
VRK3-212ENST00000596814 NUP188Q5SRE5 1749 aa18.57■□□□□ 0.56
VRK3-212ENST00000596814 INTS3Q68E01 1043 aaKnown RBP18.57■□□□□ 0.56
VRK3-212ENST00000596814 KSR2Q6VAB6 950 aa18.57■□□□□ 0.56
VRK3-212ENST00000596814 LINC00116Q8NCU8 138 aa18.57■□□□□ 0.56
VRK3-212ENST00000596814 RGPD3A6NKT7 1758 aaPredicted RBP18.56■□□□□ 0.56
VRK3-212ENST00000596814 RGPD4Q7Z3J3 1758 aa18.56■□□□□ 0.56
VRK3-212ENST00000596814 CCT4P50991 539 aaKnown RBP18.56■□□□□ 0.56
VRK3-212ENST00000596814 KCNQ4P56696 695 aa18.56■□□□□ 0.56
VRK3-212ENST00000596814 DNAAF4Q8WXU2 420 aa18.56■□□□□ 0.56
VRK3-212ENST00000596814 CNTNAP4Q9C0A0 1308 aa18.56■□□□□ 0.56
VRK3-212ENST00000596814 INTS5Q6P9B9 1019 aaKnown RBP18.55■□□□□ 0.56
VRK3-212ENST00000596814 MAP3K2Q9Y2U5 619 aa18.55■□□□□ 0.56
VRK3-212ENST00000596814 ZNF330Q9Y3S2 320 aaPredicted RBP18.55■□□□□ 0.56
VRK3-212ENST00000596814 C4BP0C0L5 1744 aa18.55■□□□□ 0.56
VRK3-212ENST00000596814 IL6STP40189 918 aaPredicted RBP18.54■□□□□ 0.56
VRK3-212ENST00000596814 RIC3Q7Z5B4 369 aa18.54■□□□□ 0.56
VRK3-212ENST00000596814 ATP10DQ9P241 1426 aa18.54■□□□□ 0.56
VRK3-212ENST00000596814 SLC27A3Q5K4L6 730 aa18.54■□□□□ 0.56
VRK3-212ENST00000596814 ANKRD13DQ6ZTN6 518 aa18.54■□□□□ 0.56
VRK3-212ENST00000596814 APBA3O96018 575 aa18.53■□□□□ 0.56
VRK3-212ENST00000596814 TTLL7Q6ZT98 887 aa18.53■□□□□ 0.56
VRK3-212ENST00000596814 NPM2Q86SE8 214 aaKnown RBP18.53■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms