RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 JAKMIP3Q5VZ66 844 aa14.42□□□□□ -0.1
LIG1-207ENST00000594759 SYT10Q6XYQ8 523 aa14.42□□□□□ -0.1
LIG1-207ENST00000594759 SPTLC3Q9NUV7 552 aa14.42□□□□□ -0.1
LIG1-207ENST00000594759 MYO1CO00159 1063 aa14.42□□□□□ -0.1
LIG1-207ENST00000594759 ERCC6LQ2NKX8 1250 aa14.42□□□□□ -0.1
LIG1-207ENST00000594759 STK31Q9BXU1 1019 aa14.42□□□□□ -0.1
LIG1-207ENST00000594759 DENND4BO75064 1496 aaPredicted RBP14.41□□□□□ -0.1
LIG1-207ENST00000594759 CLEC17AQ6ZS10 378 aa14.41□□□□□ -0.1
LIG1-207ENST00000594759 FEZ2Q9UHY8 353 aaPredicted RBP14.41□□□□□ -0.1
LIG1-207ENST00000594759 PRAG1Q86YV5 1406 aa14.41□□□□□ -0.1
LIG1-207ENST00000594759 DDX11Q96FC9 970 aa14.41□□□□□ -0.1
LIG1-207ENST00000594759 THUMPD2Q9BTF0 503 aaKnown RBP14.41□□□□□ -0.1
LIG1-207ENST00000594759 ZNF330Q9Y3S2 320 aaPredicted RBP14.41□□□□□ -0.1
LIG1-207ENST00000594759 DDX19AQ9NUU7 478 aaKnown RBP14.41□□□□□ -0.1
LIG1-207ENST00000594759 VPS18Q9P253 973 aa14.41□□□□□ -0.1
LIG1-207ENST00000594759 PSME1Q06323 249 aa14.4□□□□□ -0.1
LIG1-207ENST00000594759 CCDC70Q6NSX1 233 aa14.4□□□□□ -0.1
LIG1-207ENST00000594759 CCDC83Q8IWF9 413 aa14.4□□□□□ -0.1
LIG1-207ENST00000594759 PIK3C2GO75747 1445 aa14.4□□□□□ -0.1
LIG1-207ENST00000594759 CCDC69A6NI79 296 aa14.4□□□□□ -0.1
LIG1-207ENST00000594759 OAS2P29728 719 aaKnown RBP14.4□□□□□ -0.1
LIG1-207ENST00000594759 RUFY1Q96T51 708 aa14.4□□□□□ -0.1
LIG1-207ENST00000594759 BRMS1Q9HCU9 246 aa14.4□□□□□ -0.1
LIG1-207ENST00000594759 KDM5CP41229 1560 aa14.4□□□□□ -0.1
LIG1-207ENST00000594759 BRD1O95696 1058 aa14.4□□□□□ -0.1
LIG1-207ENST00000594759 ATP6V1AP38606 617 aa14.4□□□□□ -0.1
LIG1-207ENST00000594759 SCAND2PQ9GZW5 306 aaPredicted RBP14.4□□□□□ -0.1
LIG1-207ENST00000594759 C14orf93Q9H972 538 aaKnown RBP14.4□□□□□ -0.1
LIG1-207ENST00000594759 ABCC2Q92887 1545 aa14.4□□□□□ -0.1
LIG1-207ENST00000594759 FOSBP53539 338 aa14.39□□□□□ -0.11
LIG1-207ENST00000594759 INTS4Q96HW7 963 aaKnown RBP14.39□□□□□ -0.11
LIG1-207ENST00000594759 COL17A1Q9UMD9 1497 aaPredicted RBP14.39□□□□□ -0.11
LIG1-207ENST00000594759 RRP15Q9Y3B9 282 aaKnown RBP14.39□□□□□ -0.11
LIG1-207ENST00000594759 E2F4Q16254 413 aa14.39□□□□□ -0.11
LIG1-207ENST00000594759 ANKRD36BQ8N2N9 1353 aa14.39□□□□□ -0.11
LIG1-207ENST00000594759 ASXL1Q8IXJ9 1541 aa14.39□□□□□ -0.11
LIG1-207ENST00000594759 SERPINC1P01008 464 aa14.39□□□□□ -0.11
LIG1-207ENST00000594759 ZSCAN25Q6NSZ9 544 aa14.39□□□□□ -0.11
LIG1-207ENST00000594759 FBXO38Q6PIJ6 1188 aa14.39□□□□□ -0.11
LIG1-207ENST00000594759 DNAJC25Q9H1X3 360 aa14.39□□□□□ -0.11
LIG1-207ENST00000594759 TFIP11Q9UBB9 837 aaKnown RBP14.39□□□□□ -0.11
LIG1-207ENST00000594759 CAVIN2O95810 425 aa14.38□□□□□ -0.11
LIG1-207ENST00000594759 DNM1Q05193 864 aaKnown RBP14.38□□□□□ -0.11
LIG1-207ENST00000594759 ALDH1L2Q3SY69 923 aa14.38□□□□□ -0.11
LIG1-207ENST00000594759 DUOX2Q9NRD8 1548 aa14.38□□□□□ -0.11
LIG1-207ENST00000594759 RPAP2Q8IXW5 612 aaPredicted RBP14.38□□□□□ -0.11
LIG1-207ENST00000594759 SRRTQ9BXP5 876 aaKnown RBP14.38□□□□□ -0.11
LIG1-207ENST00000594759 ZSCAN12O43309 604 aa14.38□□□□□ -0.11
LIG1-207ENST00000594759 GBP3Q9H0R5 595 aa14.38□□□□□ -0.11
LIG1-207ENST00000594759 ZSWIM4Q9H7M6 989 aa14.38□□□□□ -0.11
LIG1-207ENST00000594759 DACT1Q9NYF0 836 aa14.38□□□□□ -0.11
LIG1-207ENST00000594759 LIMCH1Q9UPQ0 1083 aa14.38□□□□□ -0.11
LIG1-207ENST00000594759 SHTN1A0MZ66 631 aa14.37□□□□□ -0.11
LIG1-207ENST00000594759 PLEKHM2Q8IWE5 1019 aa14.37□□□□□ -0.11
LIG1-207ENST00000594759 ZNF428Q96B54 188 aa14.37□□□□□ -0.11
LIG1-207ENST00000594759 SRCIN1Q9C0H9 1055 aa14.37□□□□□ -0.11
LIG1-207ENST00000594759 SMC1AQ14683 1233 aaKnown RBP14.37□□□□□ -0.11
LIG1-207ENST00000594759 TSHZ3Q63HK5 1081 aa14.37□□□□□ -0.11
LIG1-207ENST00000594759 CYP46A1Q9Y6A2 500 aa14.37□□□□□ -0.11
LIG1-207ENST00000594759 CFAP65Q6ZU64 1925 aaKnown RBP14.37□□□□□ -0.11
LIG1-207ENST00000594759 MAP4K4O95819 1239 aaPredicted RBP14.37□□□□□ -0.11
LIG1-207ENST00000594759 SLC20A2Q08357 652 aa14.37□□□□□ -0.11
LIG1-207ENST00000594759 GBP6Q6ZN66 633 aa14.37□□□□□ -0.11
LIG1-207ENST00000594759 GOLGA5Q8TBA6 731 aa14.37□□□□□ -0.11
LIG1-207ENST00000594759 GPATCH3Q96I76 525 aa14.37□□□□□ -0.11
LIG1-207ENST00000594759 NCAPGQ9BPX3 1015 aa14.37□□□□□ -0.11
LIG1-207ENST00000594759 EXOC6BQ9Y2D4 811 aa14.37□□□□□ -0.11
LIG1-207ENST00000594759 RTEL1-TNFRSF6BF6WH68 1400 aa14.36□□□□□ -0.11
LIG1-207ENST00000594759 DHX16O60231 1041 aaKnown RBP14.36□□□□□ -0.11
LIG1-207ENST00000594759 EIF2S2P20042 333 aaKnown RBP14.36□□□□□ -0.11
LIG1-207ENST00000594759 KMT5BQ4FZB7 885 aa14.36□□□□□ -0.11
LIG1-207ENST00000594759 TMC6Q7Z403 805 aa14.36□□□□□ -0.11
LIG1-207ENST00000594759 ZNF526Q8TF50 670 aaPredicted RBP14.36□□□□□ -0.11
LIG1-207ENST00000594759 LRRCC1Q9C099 1032 aa14.36□□□□□ -0.11
LIG1-207ENST00000594759 ANO10Q9NW15 660 aa14.36□□□□□ -0.11
LIG1-207ENST00000594759 A2MP01023 1474 aa14.36□□□□□ -0.11
LIG1-207ENST00000594759 SCAF11Q99590 1463 aaKnown RBP14.36□□□□□ -0.11
LIG1-207ENST00000594759 NF2P35240 595 aa14.36□□□□□ -0.11
LIG1-207ENST00000594759 ZNF75DP51815 510 aa14.36□□□□□ -0.11
LIG1-207ENST00000594759 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.36□□□□□ -0.11
LIG1-207ENST00000594759 PHACTR2O75167 634 aa14.36□□□□□ -0.11
LIG1-207ENST00000594759 F13A1P00488 732 aa14.36□□□□□ -0.11
LIG1-207ENST00000594759 SULT6B1Q6IMI4 303 aa14.36□□□□□ -0.11
LIG1-207ENST00000594759 SMARCC1Q92922 1105 aaPredicted RBP14.36□□□□□ -0.11
LIG1-207ENST00000594759 NUDT16Q96DE0 195 aaKnown RBP14.36□□□□□ -0.11
LIG1-207ENST00000594759 CNPY4Q8N129 248 aa14.35□□□□□ -0.11
LIG1-207ENST00000594759 ABTB2Q8N961 1025 aa14.35□□□□□ -0.11
LIG1-207ENST00000594759 ZSCAN31Q96LW9 406 aaPredicted RBP14.35□□□□□ -0.11
LIG1-207ENST00000594759 PPP6R1Q9UPN7 881 aa14.35□□□□□ -0.11
LIG1-207ENST00000594759 GEMIN8Q9NWZ8 242 aaKnown RBP14.35□□□□□ -0.11
LIG1-207ENST00000594759 TUBB4AP04350 444 aa14.35□□□□□ -0.11
LIG1-207ENST00000594759 NME9Q86XW9 330 aa14.35□□□□□ -0.11
LIG1-207ENST00000594759 CTIFO43310 598 aaKnown RBP14.34□□□□□ -0.11
LIG1-207ENST00000594759 MYCNP04198 464 aaPredicted RBP14.34□□□□□ -0.11
LIG1-207ENST00000594759 EVCP57679 992 aa14.34□□□□□ -0.11
LIG1-207ENST00000594759 GNG11P61952 73 aa14.34□□□□□ -0.11
LIG1-207ENST00000594759 PDRG1Q9NUG6 133 aa14.34□□□□□ -0.11
LIG1-207ENST00000594759 GJB2P29033 226 aa14.34□□□□□ -0.11
LIG1-207ENST00000594759 DDIT3P35638 169 aa14.34□□□□□ -0.11
LIG1-207ENST00000594759 DDX54Q8TDD1 881 aaKnown RBP14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms