RNA–Protein interactions for RNA: ENST00000589867.2

MBD1-221, Transcript of methyl-CpG binding domain protein 1, human

TSL 3

Gene MBD1, Length 673 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MBD1-221	ENST00000589867	FMNL2	Q96PY5	1086 aa		22.89	■■□□□ 1.25
MBD1-221	ENST00000589867	RRP7A	Q9Y3A4	280 aa	Known RBP	22.89	■■□□□ 1.25
MBD1-221	ENST00000589867	GYS1	P13807	737 aa		22.88	■■□□□ 1.25
MBD1-221	ENST00000589867	SRP68	Q9UHB9	627 aa	Known RBP	22.88	■■□□□ 1.25
MBD1-221	ENST00000589867	TRIM35	Q9UPQ4	493 aa		22.87	■■□□□ 1.25
MBD1-221	ENST00000589867	USP16	Q9Y5T5	823 aa		22.86	■■□□□ 1.25
MBD1-221	ENST00000589867	USP42	Q9H9J4	1324 aa	Known RBP	22.85	■■□□□ 1.25
MBD1-221	ENST00000589867	UTRN	P46939	3433 aa		22.85	■■□□□ 1.25
MBD1-221	ENST00000589867	RFC4	P35249	363 aa		22.84	■■□□□ 1.25
MBD1-221	ENST00000589867	ANP32C	O43423	234 aa		22.83	■■□□□ 1.25
MBD1-221	ENST00000589867	STARD3NL	O95772	234 aa		22.83	■■□□□ 1.25
MBD1-221	ENST00000589867	A1BG	P04217	495 aa		22.83	■■□□□ 1.25
MBD1-221	ENST00000589867	EIF5	P55010	431 aa	Known RBP	22.83	■■□□□ 1.25
MBD1-221	ENST00000589867	NLGN2	Q8NFZ4	835 aa		22.83	■■□□□ 1.25
MBD1-221	ENST00000589867	PNISR	Q8TF01	805 aa	Known RBP	22.83	■■□□□ 1.25
MBD1-221	ENST00000589867	GOLGB1	Q14789	3259 aa	Known RBP	22.83	■■□□□ 1.25
MBD1-221	ENST00000589867	COL15A1	P39059	1388 aa		22.82	■■□□□ 1.24
MBD1-221	ENST00000589867	CANX	P27824	592 aa	Known RBP	22.82	■■□□□ 1.24
MBD1-221	ENST00000589867	FKBP8	Q14318	412 aa		22.82	■■□□□ 1.24
MBD1-221	ENST00000589867	TEX13A	Q9BXU3	409 aa	Predicted RBP	22.82	■■□□□ 1.24
MBD1-221	ENST00000589867	BCL2L12	Q9HB09	334 aa		22.82	■■□□□ 1.24
MBD1-221	ENST00000589867	MMP10	P09238	476 aa		22.81	■■□□□ 1.24
MBD1-221	ENST00000589867	EIF4A1	P60842	406 aa	Known RBP	22.81	■■□□□ 1.24
MBD1-221	ENST00000589867	NEUROD2	Q15784	382 aa		22.81	■■□□□ 1.24
MBD1-221	ENST00000589867	SNRPA1	P09661	255 aa	Known RBP	22.8	■■□□□ 1.24
MBD1-221	ENST00000589867	NLGN1	Q8N2Q7	840 aa		22.8	■■□□□ 1.24
MBD1-221	ENST00000589867	APAF1	O14727	1248 aa		22.79	■■□□□ 1.24
MBD1-221	ENST00000589867	USPL1	Q5W0Q7	1092 aa		22.79	■■□□□ 1.24
MBD1-221	ENST00000589867	NARF	Q9UHQ1	456 aa		22.79	■■□□□ 1.24
MBD1-221	ENST00000589867	LAMB4	A4D0S4	1761 aa		22.78	■■□□□ 1.24
MBD1-221	ENST00000589867	NBPF26	B4DH59	902 aa		22.78	■■□□□ 1.24
MBD1-221	ENST00000589867	GIGYF1	O75420	1035 aa	Predicted RBP	22.78	■■□□□ 1.24
MBD1-221	ENST00000589867	PIP4K2A	P48426	406 aa	Predicted RBP	22.78	■■□□□ 1.24
MBD1-221	ENST00000589867	NBPF10	Q6P3W6	841 aa	Known RBP	22.78	■■□□□ 1.24
MBD1-221	ENST00000589867	KLHL34	Q8N239	644 aa		22.78	■■□□□ 1.24
MBD1-221	ENST00000589867	NBPF15	Q8N660	670 aa		22.78	■■□□□ 1.24
MBD1-221	ENST00000589867	KIF13B	Q9NQT8	1826 aa		22.78	■■□□□ 1.24
MBD1-221	ENST00000589867	DDR1	Q08345	913 aa		22.77	■■□□□ 1.24
MBD1-221	ENST00000589867	LMOD3	Q0VAK6	560 aa		22.77	■■□□□ 1.24
MBD1-221	ENST00000589867	KIAA1551	Q9HCM1	1747 aa		22.77	■■□□□ 1.23
MBD1-221	ENST00000589867	TM4SF1	P30408	202 aa		22.76	■■□□□ 1.23
MBD1-221	ENST00000589867	IL6ST	P40189	918 aa	Predicted RBP	22.76	■■□□□ 1.23
MBD1-221	ENST00000589867	MRS2	Q9HD23	443 aa		22.76	■■□□□ 1.23
MBD1-221	ENST00000589867	CD2AP	Q9Y5K6	639 aa		22.76	■■□□□ 1.23
MBD1-221	ENST00000589867	CHL1	O00533	1208 aa		22.75	■■□□□ 1.23
MBD1-221	ENST00000589867	SCN7A	Q01118	1682 aa		22.74	■■□□□ 1.23
MBD1-221	ENST00000589867	BABAM1	Q9NWV8	329 aa		22.74	■■□□□ 1.23
MBD1-221	ENST00000589867	TSPYL4	Q9UJ04	414 aa		22.74	■■□□□ 1.23
MBD1-221	ENST00000589867	C10orf71	Q711Q0	1435 aa		22.74	■■□□□ 1.23
MBD1-221	ENST00000589867	BCOR	Q6W2J9	1755 aa		22.72	■■□□□ 1.23
MBD1-221	ENST00000589867	POLRMT	O00411	1230 aa	Known RBP	22.72	■■□□□ 1.23
MBD1-221	ENST00000589867	ZPR1	O75312	459 aa		22.72	■■□□□ 1.23
MBD1-221	ENST00000589867	NFIX	Q14938	502 aa		22.72	■■□□□ 1.23
MBD1-221	ENST00000589867	TBC1D2B	Q9UPU7	963 aa		22.72	■■□□□ 1.23
MBD1-221	ENST00000589867	AFDN	P55196	1824 aa	Known RBP	22.72	■■□□□ 1.23
MBD1-221	ENST00000589867	NRXN2	Q9P2S2	1712 aa		22.71	■■□□□ 1.23
MBD1-221	ENST00000589867	CAMTA2	O94983	1202 aa		22.71	■■□□□ 1.23
MBD1-221	ENST00000589867		A0A087WZG4	1122 aa		22.7	■■□□□ 1.22
MBD1-221	ENST00000589867	SENP3-EIF4A1	A0A087X0R7	540 aa		22.7	■■□□□ 1.22
MBD1-221	ENST00000589867	ZNF853	P0CG23	659 aa		22.7	■■□□□ 1.22
MBD1-221	ENST00000589867	KRT24	Q2M2I5	525 aa		22.7	■■□□□ 1.22
MBD1-221	ENST00000589867	ZNF330	Q9Y3S2	320 aa	Predicted RBP	22.69	■■□□□ 1.22
MBD1-221	ENST00000589867	PXDNL	A1KZ92	1463 aa		22.68	■■□□□ 1.22
MBD1-221	ENST00000589867	YBX3	P16989	372 aa	Known RBP eCLIP	22.68	■■□□□ 1.22
MBD1-221	ENST00000589867	LRP10	Q7Z4F1	713 aa		22.68	■■□□□ 1.22
MBD1-221	ENST00000589867	PARP3	Q9Y6F1	533 aa		22.68	■■□□□ 1.22
MBD1-221	ENST00000589867	N4BP2	Q86UW6	1770 aa	Predicted RBP	22.68	■■□□□ 1.22
MBD1-221	ENST00000589867	TBC1D9B	Q66K14	1250 aa		22.67	■■□□□ 1.22
MBD1-221	ENST00000589867	DZIP3	Q86Y13	1208 aa	Known RBP	22.67	■■□□□ 1.22
MBD1-221	ENST00000589867	PDIA6	Q15084	440 aa		22.66	■■□□□ 1.22
MBD1-221	ENST00000589867	CFAP44	Q96MT7	982 aa		22.66	■■□□□ 1.22
MBD1-221	ENST00000589867	MBIP	Q9NS73	344 aa		22.65	■■□□□ 1.22
MBD1-221	ENST00000589867	LAS1L	Q9Y4W2	734 aa	Known RBP	22.65	■■□□□ 1.22
MBD1-221	ENST00000589867	BRCA1	P38398	1863 aa	Known RBP	22.64	■■□□□ 1.22
MBD1-221	ENST00000589867	PROSER3	Q2NL68	480 aa		22.63	■■□□□ 1.21
MBD1-221	ENST00000589867	SERPINB2	P05120	415 aa		22.62	■■□□□ 1.21
MBD1-221	ENST00000589867	KCNA3	P22001	575 aa		22.62	■■□□□ 1.21
MBD1-221	ENST00000589867	CCDC27	Q2M243	656 aa		22.62	■■□□□ 1.21
MBD1-221	ENST00000589867	BICDL1	Q6ZP65	573 aa		22.62	■■□□□ 1.21
MBD1-221	ENST00000589867	IFT57	Q9NWB7	429 aa		22.62	■■□□□ 1.21
MBD1-221	ENST00000589867	CARMIL3	Q8ND23	1372 aa		22.62	■■□□□ 1.21
MBD1-221	ENST00000589867		A0A0G2JLW4	131 aa		22.61	■■□□□ 1.21
MBD1-221	ENST00000589867	TGFB2	P61812	414 aa		22.61	■■□□□ 1.21
MBD1-221	ENST00000589867	HLF	Q16534	295 aa		22.61	■■□□□ 1.21
MBD1-221	ENST00000589867	GPR162	Q16538	588 aa		22.61	■■□□□ 1.21
MBD1-221	ENST00000589867	TTLL7	Q6ZT98	887 aa		22.61	■■□□□ 1.21
MBD1-221	ENST00000589867	WWC1	Q8IX03	1113 aa		22.61	■■□□□ 1.21
MBD1-221	ENST00000589867	ERBB4	Q15303	1308 aa		22.6	■■□□□ 1.21
MBD1-221	ENST00000589867	ANKRD31	Q8N7Z5	1873 aa		22.6	■■□□□ 1.21
MBD1-221	ENST00000589867	DPEP1	P16444	411 aa		22.6	■■□□□ 1.21
MBD1-221	ENST00000589867	EIF2S2	P20042	333 aa	Known RBP	22.6	■■□□□ 1.21
MBD1-221	ENST00000589867	WWC3	Q9ULE0	1092 aa		22.6	■■□□□ 1.21
MBD1-221	ENST00000589867	ANXA1	P04083	346 aa		22.59	■■□□□ 1.21
MBD1-221	ENST00000589867	MYL6B	P14649	208 aa		22.59	■■□□□ 1.21
MBD1-221	ENST00000589867	NCBP3	Q53F19	620 aa	Known RBP	22.59	■■□□□ 1.21
MBD1-221	ENST00000589867	NGEF	Q8N5V2	710 aa		22.59	■■□□□ 1.21
MBD1-221	ENST00000589867	NUP98	P52948	1817 aa		22.59	■■□□□ 1.21
MBD1-221	ENST00000589867	CHD4	Q14839	1912 aa		22.59	■■□□□ 1.21
MBD1-221	ENST00000589867	CLEC4G	Q6UXB4	293 aa		22.58	■■□□□ 1.21
MBD1-221	ENST00000589867	PELP1	Q8IZL8	1130 aa	Known RBP	22.58	■■□□□ 1.21

Retrieved 100 of 20,778 RNA–protein pairs in 134.9 ms