RNA–Protein interactions for RNA: ENST00000584083.5

SS18-224, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 663 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-224ENST00000584083 ZBTB1Q9Y2K1 713 aa27.02■■□□□ 1.92
SS18-224ENST00000584083 USP42Q9H9J4 1324 aaKnown RBP27.01■■□□□ 1.91
SS18-224ENST00000584083 CANXP27824 592 aaKnown RBP27.01■■□□□ 1.91
SS18-224ENST00000584083 ZPR1O75312 459 aa27■■□□□ 1.91
SS18-224ENST00000584083 YY1P25490 414 aa27■■□□□ 1.91
SS18-224ENST00000584083 TAF7Q15545 349 aaPredicted RBP27■■□□□ 1.91
SS18-224ENST00000584083 WDR43Q15061 677 aaKnown RBP eCLIP26.99■■□□□ 1.91
SS18-224ENST00000584083 PARP3Q9Y6F1 533 aa26.99■■□□□ 1.91
SS18-224ENST00000584083 COL15A1P39059 1388 aa26.97■■□□□ 1.91
SS18-224ENST00000584083 FKBP8Q14318 412 aa26.97■■□□□ 1.91
SS18-224ENST00000584083 CHD4Q14839 1912 aa26.96■■□□□ 1.91
SS18-224ENST00000584083 ZNF316A6NFI3 1004 aaPredicted RBP26.96■■□□□ 1.91
SS18-224ENST00000584083 USPL1Q5W0Q7 1092 aa26.96■■□□□ 1.91
SS18-224ENST00000584083 THUMPD2Q9BTF0 503 aaKnown RBP26.95■■□□□ 1.9
SS18-224ENST00000584083 MIS18AQ9NYP9 233 aa26.95■■□□□ 1.9
SS18-224ENST00000584083 NARFQ9UHQ1 456 aa26.95■■□□□ 1.9
SS18-224ENST00000584083 ZNF330Q9Y3S2 320 aaPredicted RBP26.94■■□□□ 1.9
SS18-224ENST00000584083 SNRPA1P09661 255 aaKnown RBP26.93■■□□□ 1.9
SS18-224ENST00000584083 EIF5P55010 431 aaKnown RBP26.93■■□□□ 1.9
SS18-224ENST00000584083 RIPK4P57078 832 aa26.93■■□□□ 1.9
SS18-224ENST00000584083 CCDC146Q8IYE0 955 aa26.93■■□□□ 1.9
SS18-224ENST00000584083 PNISRQ8TF01 805 aaKnown RBP26.93■■□□□ 1.9
SS18-224ENST00000584083 A0A087WZG4 1122 aa26.92■■□□□ 1.9
SS18-224ENST00000584083 A1BGP04217 495 aa26.92■■□□□ 1.9
SS18-224ENST00000584083 NPM2Q86SE8 214 aaKnown RBP26.92■■□□□ 1.9
SS18-224ENST00000584083 KIF13BQ9NQT8 1826 aa26.91■■□□□ 1.9
SS18-224ENST00000584083 YBX3P16989 372 aaKnown RBP eCLIP26.91■■□□□ 1.9
SS18-224ENST00000584083 TMPOP42166 694 aaKnown RBP26.91■■□□□ 1.9
SS18-224ENST00000584083 USP16Q9Y5T5 823 aa26.91■■□□□ 1.9
SS18-224ENST00000584083 PRAMEF22A3QJZ6 481 aa26.9■■□□□ 1.9
SS18-224ENST00000584083 ADAMTS8Q9UP79 889 aa26.9■■□□□ 1.9
SS18-224ENST00000584083 GRIN3BO60391 1043 aa26.89■■□□□ 1.9
SS18-224ENST00000584083 IL6STP40189 918 aaPredicted RBP26.89■■□□□ 1.9
SS18-224ENST00000584083 DDR1Q08345 913 aa26.89■■□□□ 1.9
SS18-224ENST00000584083 WWC3Q9ULE0 1092 aa26.89■■□□□ 1.9
SS18-224ENST00000584083 KDM3BQ7LBC6 1761 aa26.89■■□□□ 1.89
SS18-224ENST00000584083 TM4SF1P30408 202 aa26.88■■□□□ 1.89
SS18-224ENST00000584083 LMOD3Q0VAK6 560 aa26.88■■□□□ 1.89
SS18-224ENST00000584083 RUNDC1Q96C34 613 aa26.88■■□□□ 1.89
SS18-224ENST00000584083 RRP7AQ9Y3A4 280 aaKnown RBP26.88■■□□□ 1.89
SS18-224ENST00000584083 N4BP2Q86UW6 1770 aaPredicted RBP26.87■■□□□ 1.89
SS18-224ENST00000584083 NEUROD2Q15784 382 aa26.87■■□□□ 1.89
SS18-224ENST00000584083 TBC1D2BQ9UPU7 963 aa26.87■■□□□ 1.89
SS18-224ENST00000584083 C10orf71Q711Q0 1435 aa26.87■■□□□ 1.89
SS18-224ENST00000584083 TGFB2P61812 414 aa26.86■■□□□ 1.89
SS18-224ENST00000584083 BCL2L12Q9HB09 334 aa26.86■■□□□ 1.89
SS18-224ENST00000584083 POLRMTO00411 1230 aaKnown RBP26.85■■□□□ 1.89
SS18-224ENST00000584083 PIP4K2AP48426 406 aaPredicted RBP26.85■■□□□ 1.89
SS18-224ENST00000584083 NFIXQ14938 502 aa26.85■■□□□ 1.89
SS18-224ENST00000584083 A0A0G2JLW4 131 aa26.84■■□□□ 1.89
SS18-224ENST00000584083 PXDNLA1KZ92 1463 aa26.84■■□□□ 1.89
SS18-224ENST00000584083 AFDNP55196 1824 aaKnown RBP26.83■■□□□ 1.89
SS18-224ENST00000584083 KIAA1551Q9HCM1 1747 aa26.82■■□□□ 1.88
SS18-224ENST00000584083 EIF4A1P60842 406 aaKnown RBP26.82■■□□□ 1.88
SS18-224ENST00000584083 BICDL1Q6ZP65 573 aa26.82■■□□□ 1.88
SS18-224ENST00000584083 TSPYL4Q9UJ04 414 aa26.82■■□□□ 1.88
SS18-224ENST00000584083 LAMB4A4D0S4 1761 aa26.81■■□□□ 1.88
SS18-224ENST00000584083 DPEP1P16444 411 aa26.81■■□□□ 1.88
SS18-224ENST00000584083 DZIP3Q86Y13 1208 aaKnown RBP26.81■■□□□ 1.88
SS18-224ENST00000584083 SCN7AQ01118 1682 aa26.81■■□□□ 1.88
SS18-224ENST00000584083 GOLGB1Q14789 3259 aaKnown RBP26.81■■□□□ 1.88
SS18-224ENST00000584083 GIGYF1O75420 1035 aaPredicted RBP26.8■■□□□ 1.88
SS18-224ENST00000584083 SERPINB2P05120 415 aa26.79■■□□□ 1.88
SS18-224ENST00000584083 UTRNP46939 3433 aa26.78■■□□□ 1.88
SS18-224ENST00000584083 NBPF26B4DH59 902 aa26.78■■□□□ 1.88
SS18-224ENST00000584083 TBC1D9BQ66K14 1250 aa26.78■■□□□ 1.88
SS18-224ENST00000584083 NBPF10Q6P3W6 841 aaKnown RBP26.78■■□□□ 1.88
SS18-224ENST00000584083 NBPF15Q8N660 670 aa26.78■■□□□ 1.88
SS18-224ENST00000584083 ANP32CO43423 234 aa26.77■■□□□ 1.88
SS18-224ENST00000584083 CAMTA2O94983 1202 aa26.77■■□□□ 1.88
SS18-224ENST00000584083 BCS1LQ9Y276 419 aa26.77■■□□□ 1.88
SS18-224ENST00000584083 BABAM1Q9NWV8 329 aa26.76■■□□□ 1.87
SS18-224ENST00000584083 TRIM35Q9UPQ4 493 aa26.76■■□□□ 1.87
SS18-224ENST00000584083 BCORQ6W2J9 1755 aa26.76■■□□□ 1.87
SS18-224ENST00000584083 LAS1LQ9Y4W2 734 aaKnown RBP26.75■■□□□ 1.87
SS18-224ENST00000584083 NRXN2Q9P2S2 1712 aa26.75■■□□□ 1.87
SS18-224ENST00000584083 BRCA1P38398 1863 aaKnown RBP26.74■■□□□ 1.87
SS18-224ENST00000584083 CCDC184Q52MB2 194 aa26.74■■□□□ 1.87
SS18-224ENST00000584083 CHRNA5P30532 468 aa26.73■■□□□ 1.87
SS18-224ENST00000584083 NGEFQ8N5V2 710 aa26.73■■□□□ 1.87
SS18-224ENST00000584083 SETDB2Q96T68 719 aa26.73■■□□□ 1.87
SS18-224ENST00000584083 PIM2Q9P1W9 311 aa26.73■■□□□ 1.87
SS18-224ENST00000584083 APAF1O14727 1248 aa26.72■■□□□ 1.87
SS18-224ENST00000584083 KCNA3P22001 575 aa26.72■■□□□ 1.87
SS18-224ENST00000584083 ZNF784Q8NCA9 323 aaPredicted RBP26.72■■□□□ 1.87
SS18-224ENST00000584083 ZNF652Q9Y2D9 606 aa26.72■■□□□ 1.87
SS18-224ENST00000584083 CARMIL3Q8ND23 1372 aa26.71■■□□□ 1.87
SS18-224ENST00000584083 NPHP1O15259 732 aa26.7■■□□□ 1.86
SS18-224ENST00000584083 MYL6BP14649 208 aa26.69■■□□□ 1.86
SS18-224ENST00000584083 CLEC4GQ6UXB4 293 aa26.69■■□□□ 1.86
SS18-224ENST00000584083 CHL1O00533 1208 aa26.68■■□□□ 1.86
SS18-224ENST00000584083 EIF2S2P20042 333 aaKnown RBP26.68■■□□□ 1.86
SS18-224ENST00000584083 DALRD3Q5D0E6 543 aaKnown RBP26.68■■□□□ 1.86
SS18-224ENST00000584083 MRS2Q9HD23 443 aa26.68■■□□□ 1.86
SS18-224ENST00000584083 ARFGEF1Q9Y6D6 1849 aa26.67■■□□□ 1.86
SS18-224ENST00000584083 PRR5LQ6MZQ0 368 aa26.66■■□□□ 1.86
SS18-224ENST00000584083 ARHGAP27Q6ZUM4 889 aa26.66■■□□□ 1.86
SS18-224ENST00000584083 C2CD5Q86YS7 1000 aa26.66■■□□□ 1.86
SS18-224ENST00000584083 CCDC24Q8N4L8 307 aa26.66■■□□□ 1.86
SS18-224ENST00000584083 KIF6Q6ZMV9 814 aa26.65■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 119.5 ms