RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 SOS1Q07889 1333 aaPredicted RBP26.57■■□□□ 1.84
SS18-218ENST00000581021 POLD1P28340 1107 aa26.56■■□□□ 1.84
SS18-218ENST00000581021 SRP68Q9UHB9 627 aaKnown RBP26.54■■□□□ 1.84
SS18-218ENST00000581021 TRIM35Q9UPQ4 493 aa26.54■■□□□ 1.84
SS18-218ENST00000581021 NEUROD2Q15784 382 aa26.53■■□□□ 1.84
SS18-218ENST00000581021 SYT17Q9BSW7 474 aa26.53■■□□□ 1.84
SS18-218ENST00000581021 GYS1P13807 737 aa26.52■■□□□ 1.84
SS18-218ENST00000581021 USP42Q9H9J4 1324 aaKnown RBP26.51■■□□□ 1.83
SS18-218ENST00000581021 PNISRQ8TF01 805 aaKnown RBP26.51■■□□□ 1.83
SS18-218ENST00000581021 COL15A1P39059 1388 aa26.5■■□□□ 1.83
SS18-218ENST00000581021 STARD3NLO95772 234 aa26.5■■□□□ 1.83
SS18-218ENST00000581021 RFC4P35249 363 aa26.5■■□□□ 1.83
SS18-218ENST00000581021 MRS2Q9HD23 443 aa26.5■■□□□ 1.83
SS18-218ENST00000581021 USP16Q9Y5T5 823 aa26.5■■□□□ 1.83
SS18-218ENST00000581021 CANXP27824 592 aaKnown RBP26.49■■□□□ 1.83
SS18-218ENST00000581021 APAF1O14727 1248 aa26.48■■□□□ 1.83
SS18-218ENST00000581021 A1BGP04217 495 aa26.48■■□□□ 1.83
SS18-218ENST00000581021 SNRPA1P09661 255 aaKnown RBP26.47■■□□□ 1.83
SS18-218ENST00000581021 EIF5P55010 431 aaKnown RBP26.47■■□□□ 1.83
SS18-218ENST00000581021 LMOD3Q0VAK6 560 aa26.47■■□□□ 1.83
SS18-218ENST00000581021 TEX13AQ9BXU3 409 aaPredicted RBP26.47■■□□□ 1.83
SS18-218ENST00000581021 MMP10P09238 476 aa26.46■■□□□ 1.83
SS18-218ENST00000581021 PIP4K2AP48426 406 aaPredicted RBP26.46■■□□□ 1.83
SS18-218ENST00000581021 EIF4A1P60842 406 aaKnown RBP26.46■■□□□ 1.83
SS18-218ENST00000581021 FKBP8Q14318 412 aa26.46■■□□□ 1.83
SS18-218ENST00000581021 KLHL34Q8N239 644 aa26.46■■□□□ 1.83
SS18-218ENST00000581021 NLGN2Q8NFZ4 835 aa26.46■■□□□ 1.83
SS18-218ENST00000581021 LAMB4A4D0S4 1761 aa26.45■■□□□ 1.82
SS18-218ENST00000581021 BCL2L12Q9HB09 334 aa26.44■■□□□ 1.82
SS18-218ENST00000581021 SENP3-EIF4A1A0A087X0R7 540 aa26.43■■□□□ 1.82
SS18-218ENST00000581021 USPL1Q5W0Q7 1092 aa26.43■■□□□ 1.82
SS18-218ENST00000581021 NLGN1Q8N2Q7 840 aa26.43■■□□□ 1.82
SS18-218ENST00000581021 TSPYL4Q9UJ04 414 aa26.43■■□□□ 1.82
SS18-218ENST00000581021 NBPF26B4DH59 902 aa26.42■■□□□ 1.82
SS18-218ENST00000581021 GIGYF1O75420 1035 aaPredicted RBP26.42■■□□□ 1.82
SS18-218ENST00000581021 NBPF10Q6P3W6 841 aaKnown RBP26.42■■□□□ 1.82
SS18-218ENST00000581021 NBPF15Q8N660 670 aa26.42■■□□□ 1.82
SS18-218ENST00000581021 NARFQ9UHQ1 456 aa26.42■■□□□ 1.82
SS18-218ENST00000581021 DDR1Q08345 913 aa26.41■■□□□ 1.82
SS18-218ENST00000581021 GOLGB1Q14789 3259 aaKnown RBP26.41■■□□□ 1.82
SS18-218ENST00000581021 SCN7AQ01118 1682 aa26.41■■□□□ 1.82
SS18-218ENST00000581021 UTRNP46939 3433 aa26.4■■□□□ 1.82
SS18-218ENST00000581021 IL6STP40189 918 aaPredicted RBP26.4■■□□□ 1.82
SS18-218ENST00000581021 CHL1O00533 1208 aa26.39■■□□□ 1.82
SS18-218ENST00000581021 ZNF330Q9Y3S2 320 aaPredicted RBP26.39■■□□□ 1.82
SS18-218ENST00000581021 ZPR1O75312 459 aa26.38■■□□□ 1.81
SS18-218ENST00000581021 BABAM1Q9NWV8 329 aa26.38■■□□□ 1.81
SS18-218ENST00000581021 TBC1D2BQ9UPU7 963 aa26.37■■□□□ 1.81
SS18-218ENST00000581021 CD2APQ9Y5K6 639 aa26.37■■□□□ 1.81
SS18-218ENST00000581021 C10orf71Q711Q0 1435 aa26.37■■□□□ 1.81
SS18-218ENST00000581021 TM4SF1P30408 202 aa26.36■■□□□ 1.81
SS18-218ENST00000581021 KRT24Q2M2I5 525 aa26.36■■□□□ 1.81
SS18-218ENST00000581021 KIAA1551Q9HCM1 1747 aa26.35■■□□□ 1.81
SS18-218ENST00000581021 BCORQ6W2J9 1755 aa26.35■■□□□ 1.81
SS18-218ENST00000581021 KIF13BQ9NQT8 1826 aa26.35■■□□□ 1.81
SS18-218ENST00000581021 A0A087WZG4 1122 aa26.34■■□□□ 1.81
SS18-218ENST00000581021 CAMTA2O94983 1202 aa26.34■■□□□ 1.81
SS18-218ENST00000581021 NFIXQ14938 502 aa26.34■■□□□ 1.81
SS18-218ENST00000581021 LAS1LQ9Y4W2 734 aaKnown RBP26.34■■□□□ 1.81
SS18-218ENST00000581021 POLRMTO00411 1230 aaKnown RBP26.33■■□□□ 1.81
SS18-218ENST00000581021 ZNF853P0CG23 659 aa26.33■■□□□ 1.81
SS18-218ENST00000581021 CFAP44Q96MT7 982 aa26.31■■□□□ 1.8
SS18-218ENST00000581021 PARP3Q9Y6F1 533 aa26.31■■□□□ 1.8
SS18-218ENST00000581021 PXDNLA1KZ92 1463 aa26.3■■□□□ 1.8
SS18-218ENST00000581021 DZIP3Q86Y13 1208 aaKnown RBP26.3■■□□□ 1.8
SS18-218ENST00000581021 MBIPQ9NS73 344 aa26.3■■□□□ 1.8
SS18-218ENST00000581021 NRXN2Q9P2S2 1712 aa26.3■■□□□ 1.8
SS18-218ENST00000581021 TBC1D9BQ66K14 1250 aa26.29■■□□□ 1.8
SS18-218ENST00000581021 AFDNP55196 1824 aaKnown RBP26.28■■□□□ 1.8
SS18-218ENST00000581021 FAM9BQ8IZU0 186 aa26.28■■□□□ 1.8
SS18-218ENST00000581021 YBX3P16989 372 aaKnown RBP eCLIP26.27■■□□□ 1.8
SS18-218ENST00000581021 PDIA6Q15084 440 aa26.27■■□□□ 1.8
SS18-218ENST00000581021 PROSER3Q2NL68 480 aa26.27■■□□□ 1.8
SS18-218ENST00000581021 BICDL1Q6ZP65 573 aa26.27■■□□□ 1.8
SS18-218ENST00000581021 LRP10Q7Z4F1 713 aa26.27■■□□□ 1.8
SS18-218ENST00000581021 IFT57Q9NWB7 429 aa26.27■■□□□ 1.8
SS18-218ENST00000581021 CCDC27Q2M243 656 aa26.26■■□□□ 1.79
SS18-218ENST00000581021 WWC1Q8IX03 1113 aa26.26■■□□□ 1.79
SS18-218ENST00000581021 CARMIL3Q8ND23 1372 aa26.25■■□□□ 1.79
SS18-218ENST00000581021 EIF2S2P20042 333 aaKnown RBP26.25■■□□□ 1.79
SS18-218ENST00000581021 WWC3Q9ULE0 1092 aa26.25■■□□□ 1.79
SS18-218ENST00000581021 N4BP2Q86UW6 1770 aaPredicted RBP26.25■■□□□ 1.79
SS18-218ENST00000581021 ANXA1P04083 346 aa26.24■■□□□ 1.79
SS18-218ENST00000581021 MYL6BP14649 208 aa26.24■■□□□ 1.79
SS18-218ENST00000581021 TTLL7Q6ZT98 887 aa26.24■■□□□ 1.79
SS18-218ENST00000581021 NGEFQ8N5V2 710 aa26.24■■□□□ 1.79
SS18-218ENST00000581021 NECTIN2Q92692 538 aa26.24■■□□□ 1.79
SS18-218ENST00000581021 ERBB4Q15303 1308 aa26.23■■□□□ 1.79
SS18-218ENST00000581021 PELP1Q8IZL8 1130 aaKnown RBP26.23■■□□□ 1.79
SS18-218ENST00000581021 SERPINB2P05120 415 aa26.22■■□□□ 1.79
SS18-218ENST00000581021 GNAI1P63096 354 aa26.22■■□□□ 1.79
SS18-218ENST00000581021 CALD1Q05682 793 aaKnown RBP26.22■■□□□ 1.79
SS18-218ENST00000581021 HLFQ16534 295 aa26.22■■□□□ 1.79
SS18-218ENST00000581021 GPR162Q16538 588 aa26.22■■□□□ 1.79
SS18-218ENST00000581021 NPM2Q86SE8 214 aaKnown RBP26.22■■□□□ 1.79
SS18-218ENST00000581021 A0A0G2JLW4 131 aa26.21■■□□□ 1.79
SS18-218ENST00000581021 SALL2Q9Y467 1007 aaPredicted RBP26.21■■□□□ 1.79
SS18-218ENST00000581021 DPEP1P16444 411 aa26.2■■□□□ 1.78
SS18-218ENST00000581021 NCBP3Q53F19 620 aaKnown RBP26.2■■□□□ 1.78
SS18-218ENST00000581021 KCNA3P22001 575 aa26.19■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms