RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 TEX13AQ9BXU3 409 aaPredicted RBP17.4■□□□□ 0.38
CCDC40-209ENST00000573474 DDX21Q9NR30 783 aaKnown RBP eCLIP17.4■□□□□ 0.38
CCDC40-209ENST00000573474 HYPKQ9NX55 129 aa17.4■□□□□ 0.38
CCDC40-209ENST00000573474 USP16Q9Y5T5 823 aa17.4■□□□□ 0.38
CCDC40-209ENST00000573474 ABCC4O15439 1325 aa17.4■□□□□ 0.38
CCDC40-209ENST00000573474 UBR2Q8IWV8 1755 aa17.4■□□□□ 0.38
CCDC40-209ENST00000573474 ITPRIPQ8IWB1 547 aa17.38■□□□□ 0.37
CCDC40-209ENST00000573474 TMEM57Q8N5G2 664 aa17.38■□□□□ 0.37
CCDC40-209ENST00000573474 SMARCC1Q92922 1105 aaPredicted RBP17.38■□□□□ 0.37
CCDC40-209ENST00000573474 RBM42Q9BTD8 480 aaKnown RBP17.38■□□□□ 0.37
CCDC40-209ENST00000573474 CACNA1FO60840 1977 aa17.38■□□□□ 0.37
CCDC40-209ENST00000573474 ERBB4Q15303 1308 aa17.38■□□□□ 0.37
CCDC40-209ENST00000573474 C5P01031 1676 aa17.37■□□□□ 0.37
CCDC40-209ENST00000573474 KCNQ2O43526 872 aa17.37■□□□□ 0.37
CCDC40-209ENST00000573474 FKBP5Q13451 457 aaPredicted RBP17.37■□□□□ 0.37
CCDC40-209ENST00000573474 PDIA6Q15084 440 aa17.37■□□□□ 0.37
CCDC40-209ENST00000573474 PHAXQ9H814 394 aaKnown RBP17.37■□□□□ 0.37
CCDC40-209ENST00000573474 DDX19BQ9UMR2 479 aa17.37■□□□□ 0.37
CCDC40-209ENST00000573474 RGS12O14924 1447 aa17.37■□□□□ 0.37
CCDC40-209ENST00000573474 RXRBP28702 533 aa17.36■□□□□ 0.37
CCDC40-209ENST00000573474 PROSER3Q2NL68 480 aa17.36■□□□□ 0.37
CCDC40-209ENST00000573474 INTS3Q68E01 1043 aaKnown RBP17.36■□□□□ 0.37
CCDC40-209ENST00000573474 CHMP4BQ9H444 224 aaKnown RBP17.36■□□□□ 0.37
CCDC40-209ENST00000573474 KAT6BQ8WYB5 2073 aa17.35■□□□□ 0.37
CCDC40-209ENST00000573474 ANXA1P04083 346 aa17.35■□□□□ 0.37
CCDC40-209ENST00000573474 KRT27Q7Z3Y8 459 aa17.35■□□□□ 0.37
CCDC40-209ENST00000573474 CCDC136Q96JN2 1154 aa17.35■□□□□ 0.37
CCDC40-209ENST00000573474 STARD3NLO95772 234 aa17.34■□□□□ 0.37
CCDC40-209ENST00000573474 FAM182BQ5T319 152 aa17.34■□□□□ 0.37
CCDC40-209ENST00000573474 DNAJC10Q8IXB1 793 aa17.34■□□□□ 0.37
CCDC40-209ENST00000573474 LAMB4A4D0S4 1761 aa17.33■□□□□ 0.37
CCDC40-209ENST00000573474 F6X3S4 739 aa17.33■□□□□ 0.36
CCDC40-209ENST00000573474 MYL6BP14649 208 aa17.33■□□□□ 0.36
CCDC40-209ENST00000573474 CCT4P50991 539 aaKnown RBP17.33■□□□□ 0.36
CCDC40-209ENST00000573474 B4GALNT3Q6L9W6 998 aa17.33■□□□□ 0.36
CCDC40-209ENST00000573474 FAM196AQ6ZSG2 479 aa17.33■□□□□ 0.36
CCDC40-209ENST00000573474 RGS17Q9UGC6 210 aaPredicted RBP17.33■□□□□ 0.36
CCDC40-209ENST00000573474 DDX58O95786 925 aaKnown RBP17.32■□□□□ 0.36
CCDC40-209ENST00000573474 SLC4A9Q96Q91 983 aa17.32■□□□□ 0.36
CCDC40-209ENST00000573474 PALLDQ8WX93 1383 aa17.31■□□□□ 0.36
CCDC40-209ENST00000573474 LOC102724428A0A0B4J2F2 783 aa17.31■□□□□ 0.36
CCDC40-209ENST00000573474 NBPF26B4DH59 902 aa17.31■□□□□ 0.36
CCDC40-209ENST00000573474 ZBTB7BO15156 539 aaPredicted RBP17.31■□□□□ 0.36
CCDC40-209ENST00000573474 A1BGP04217 495 aa17.31■□□□□ 0.36
CCDC40-209ENST00000573474 SIK1P57059 783 aa17.31■□□□□ 0.36
CCDC40-209ENST00000573474 NBPF14Q5TI25 921 aa17.31■□□□□ 0.36
CCDC40-209ENST00000573474 NBPF10Q6P3W6 841 aaKnown RBP17.31■□□□□ 0.36
CCDC40-209ENST00000573474 SLC4A10Q6U841 1118 aa17.31■□□□□ 0.36
CCDC40-209ENST00000573474 KSR2Q6VAB6 950 aa17.31■□□□□ 0.36
CCDC40-209ENST00000573474 LRP10Q7Z4F1 713 aa17.31■□□□□ 0.36
CCDC40-209ENST00000573474 NBPF15Q8N660 670 aa17.31■□□□□ 0.36
CCDC40-209ENST00000573474 PI4KAP2A4QPH2 592 aa17.3■□□□□ 0.36
CCDC40-209ENST00000573474 CYP19A1P11511 503 aaPredicted RBP17.3■□□□□ 0.36
CCDC40-209ENST00000573474 COPS6Q7L5N1 327 aa17.3■□□□□ 0.36
CCDC40-209ENST00000573474 PI4KAP1Q8N8J0 262 aa17.3■□□□□ 0.36
CCDC40-209ENST00000573474 XAGE3Q8WTP9 111 aa17.3■□□□□ 0.36
CCDC40-209ENST00000573474 DNAAF4Q8WXU2 420 aa17.3■□□□□ 0.36
CCDC40-209ENST00000573474 ZBTB40Q9NUA8 1239 aa17.3■□□□□ 0.36
CCDC40-209ENST00000573474 NHSQ6T4R5 1651 aa17.29■□□□□ 0.36
CCDC40-209ENST00000573474 ATP6V1AP38606 617 aa17.29■□□□□ 0.36
CCDC40-209ENST00000573474 AIMP1Q12904 312 aaKnown RBP17.29■□□□□ 0.36
CCDC40-209ENST00000573474 POTEAQ6S8J7 498 aa17.29■□□□□ 0.36
CCDC40-209ENST00000573474 PTF1AQ7RTS3 328 aa17.29■□□□□ 0.36
CCDC40-209ENST00000573474 BCL11BQ9C0K0 894 aaPredicted RBP17.29■□□□□ 0.36
CCDC40-209ENST00000573474 PXDNLA1KZ92 1463 aa17.29■□□□□ 0.36
CCDC40-209ENST00000573474 ADCY9O60503 1353 aa17.28■□□□□ 0.36
CCDC40-209ENST00000573474 PIP4K2AP48426 406 aaPredicted RBP17.28■□□□□ 0.36
CCDC40-209ENST00000573474 BRWD3Q6RI45 1802 aa17.27■□□□□ 0.36
CCDC40-209ENST00000573474 ANKRD13DQ6ZTN6 518 aa17.27■□□□□ 0.36
CCDC40-209ENST00000573474 RIC3Q7Z5B4 369 aa17.27■□□□□ 0.36
CCDC40-209ENST00000573474 MAP3K2Q9Y2U5 619 aa17.27■□□□□ 0.36
CCDC40-209ENST00000573474 SRCIN1Q9C0H9 1055 aa17.26■□□□□ 0.35
CCDC40-209ENST00000573474 ATP10DQ9P241 1426 aa17.25■□□□□ 0.35
CCDC40-209ENST00000573474 ITPK1Q13572 414 aa17.25■□□□□ 0.35
CCDC40-209ENST00000573474 BEND3Q5T5X7 828 aa17.25■□□□□ 0.35
CCDC40-209ENST00000573474 PLBD2Q8NHP8 589 aa17.25■□□□□ 0.35
CCDC40-209ENST00000573474 PCDHB15Q9Y5E8 787 aa17.25■□□□□ 0.35
CCDC40-209ENST00000573474 TJP1Q07157 1748 aa17.24■□□□□ 0.35
CCDC40-209ENST00000573474 SBF2Q86WG5 1849 aa17.24■□□□□ 0.35
CCDC40-209ENST00000573474 ALDH1L1O75891 902 aa17.24■□□□□ 0.35
CCDC40-209ENST00000573474 CCDC87Q9NVE4 849 aa17.24■□□□□ 0.35
CCDC40-209ENST00000573474 CICQ96RK0 1608 aaPredicted RBP17.24■□□□□ 0.35
CCDC40-209ENST00000573474 BTAF1O14981 1849 aa17.24■□□□□ 0.35
CCDC40-209ENST00000573474 ZNF831Q5JPB2 1677 aa17.23■□□□□ 0.35
CCDC40-209ENST00000573474 NEXNQ0ZGT2 675 aa17.23■□□□□ 0.35
CCDC40-209ENST00000573474 METTL22Q9BUU2 404 aaPredicted RBP17.23■□□□□ 0.35
CCDC40-209ENST00000573474 GNAI3P08754 354 aa17.22■□□□□ 0.35
CCDC40-209ENST00000573474 IL6STP40189 918 aaPredicted RBP17.22■□□□□ 0.35
CCDC40-209ENST00000573474 CRKLP46109 303 aaKnown RBP17.22■□□□□ 0.35
CCDC40-209ENST00000573474 INTS5Q6P9B9 1019 aaKnown RBP17.22■□□□□ 0.35
CCDC40-209ENST00000573474 TTLL7Q6ZT98 887 aa17.22■□□□□ 0.35
CCDC40-209ENST00000573474 LINS1Q8NG48 757 aa17.22■□□□□ 0.35
CCDC40-209ENST00000573474 MEIS3Q99687 375 aa17.22■□□□□ 0.35
CCDC40-209ENST00000573474 RWDD1Q9H446 243 aaPredicted RBP17.22■□□□□ 0.35
CCDC40-209ENST00000573474 ZBTB1Q9Y2K1 713 aa17.22■□□□□ 0.35
CCDC40-209ENST00000573474 TRIM37O94972 964 aa17.21■□□□□ 0.35
CCDC40-209ENST00000573474 KIF6Q6ZMV9 814 aa17.21■□□□□ 0.35
CCDC40-209ENST00000573474 CENPQQ7L2Z9 268 aaPredicted RBP17.21■□□□□ 0.35
CCDC40-209ENST00000573474 NPM2Q86SE8 214 aaKnown RBP17.21■□□□□ 0.35
CCDC40-209ENST00000573474 CCNL1Q9UK58 526 aaPredicted RBP17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms