RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 ZNF526Q8TF50 670 aaPredicted RBP9.13□□□□□ -0.95
VPS53-213ENST00000572334 RNF39Q9H2S5 420 aa9.13□□□□□ -0.95
VPS53-213ENST00000572334 GPBP1L1Q9HC44 474 aaPredicted RBP9.13□□□□□ -0.95
VPS53-213ENST00000572334 CCDC87Q9NVE4 849 aa9.13□□□□□ -0.95
VPS53-213ENST00000572334 BCS1LQ9Y276 419 aa9.13□□□□□ -0.95
VPS53-213ENST00000572334 ZBTB1Q9Y2K1 713 aa9.13□□□□□ -0.95
VPS53-213ENST00000572334 PARP3Q9Y6F1 533 aa9.13□□□□□ -0.95
VPS53-213ENST00000572334 IL17REQ8NFR9 667 aa9.12□□□□□ -0.95
VPS53-213ENST00000572334 SCN7AQ01118 1682 aa9.12□□□□□ -0.95
VPS53-213ENST00000572334 DLG5Q8TDM6 1919 aa9.11□□□□□ -0.95
VPS53-213ENST00000572334 COL11A2P13942 1736 aaPredicted RBP9.11□□□□□ -0.95
VPS53-213ENST00000572334 CHRNA5P30532 468 aa9.11□□□□□ -0.95
VPS53-213ENST00000572334 USPL1Q5W0Q7 1092 aa9.11□□□□□ -0.95
VPS53-213ENST00000572334 VSIG10Q8N0Z9 540 aa9.11□□□□□ -0.95
VPS53-213ENST00000572334 BCORQ6W2J9 1755 aa9.11□□□□□ -0.95
VPS53-213ENST00000572334 COL15A1P39059 1388 aa9.11□□□□□ -0.95
VPS53-213ENST00000572334 CACNA1SQ13698 1873 aa9.11□□□□□ -0.95
VPS53-213ENST00000572334 DICER1Q9UPY3 1922 aaKnown RBP9.1□□□□□ -0.95
VPS53-213ENST00000572334 FCHSD2O94868 740 aa9.1□□□□□ -0.95
VPS53-213ENST00000572334 NFIXQ14938 502 aa9.1□□□□□ -0.95
VPS53-213ENST00000572334 PHACTR3Q96KR7 559 aa9.1□□□□□ -0.95
VPS53-213ENST00000572334 NARFQ9UHQ1 456 aa9.1□□□□□ -0.95
VPS53-213ENST00000572334 FER1L6Q2WGJ9 1857 aa9.1□□□□□ -0.95
VPS53-213ENST00000572334 CARMIL3Q8ND23 1372 aa9.1□□□□□ -0.95
VPS53-213ENST00000572334 CEMIPQ8WUJ3 1361 aa9.1□□□□□ -0.95
VPS53-213ENST00000572334 HSPA6P17066 643 aa9.09□□□□□ -0.95
VPS53-213ENST00000572334 PRELPP51888 382 aa9.09□□□□□ -0.95
VPS53-213ENST00000572334 EIF5P55010 431 aaKnown RBP9.09□□□□□ -0.95
VPS53-213ENST00000572334 ARHGAP27Q6ZUM4 889 aa9.09□□□□□ -0.95
VPS53-213ENST00000572334 ZNF496Q96IT1 587 aaPredicted RBP9.09□□□□□ -0.95
VPS53-213ENST00000572334 RSPH6AQ9H0K4 717 aa9.09□□□□□ -0.95
VPS53-213ENST00000572334 PIM2Q9P1W9 311 aa9.09□□□□□ -0.95
VPS53-213ENST00000572334 KCNQ3O43525 872 aa9.08□□□□□ -0.96
VPS53-213ENST00000572334 CNGB1Q14028 1251 aaPredicted RBP9.08□□□□□ -0.96
VPS53-213ENST00000572334 NMRK2Q9NPI5 230 aa9.08□□□□□ -0.96
VPS53-213ENST00000572334 ARFGEF2Q9Y6D5 1785 aa9.08□□□□□ -0.96
VPS53-213ENST00000572334 HEG1Q9ULI3 1381 aa9.08□□□□□ -0.96
VPS53-213ENST00000572334 TIAM2Q8IVF5 1701 aa9.08□□□□□ -0.96
VPS53-213ENST00000572334 SLX4Q8IY92 1834 aa9.08□□□□□ -0.96
VPS53-213ENST00000572334 TNRC6CQ9HCJ0 1690 aaKnown RBP9.07□□□□□ -0.96
VPS53-213ENST00000572334 GNAT3A8MTJ3 354 aa9.07□□□□□ -0.96
VPS53-213ENST00000572334 U2SURPO15042 1029 aaKnown RBP9.07□□□□□ -0.96
VPS53-213ENST00000572334 ZPR1O75312 459 aa9.07□□□□□ -0.96
VPS53-213ENST00000572334 CANXP27824 592 aaKnown RBP9.07□□□□□ -0.96
VPS53-213ENST00000572334 DALRD3Q5D0E6 543 aaKnown RBP9.07□□□□□ -0.96
VPS53-213ENST00000572334 C9orf131Q5VYM1 1079 aa9.07□□□□□ -0.96
VPS53-213ENST00000572334 ZNF790Q6PG37 636 aa9.07□□□□□ -0.96
VPS53-213ENST00000572334 WDR90Q96KV7 1748 aa9.07□□□□□ -0.96
VPS53-213ENST00000572334 PCNTO95613 3336 aa9.06□□□□□ -0.96
VPS53-213ENST00000572334 SERPINB2P05120 415 aa9.06□□□□□ -0.96
VPS53-213ENST00000572334 TBC1D9BQ66K14 1250 aa9.06□□□□□ -0.96
VPS53-213ENST00000572334 GAS2L2Q8NHY3 880 aa9.06□□□□□ -0.96
VPS53-213ENST00000572334 KDM3BQ7LBC6 1761 aa9.06□□□□□ -0.96
VPS53-213ENST00000572334 PRAMEF22A3QJZ6 481 aa9.05□□□□□ -0.96
VPS53-213ENST00000572334 A1BGP04217 495 aa9.05□□□□□ -0.96
VPS53-213ENST00000572334 PPP2R1AP30153 589 aa9.05□□□□□ -0.96
VPS53-213ENST00000572334 PRKAR2BP31323 418 aa9.05□□□□□ -0.96
VPS53-213ENST00000572334 RASSF7Q02833 373 aa9.05□□□□□ -0.96
VPS53-213ENST00000572334 DNAJC5GQ8N7S2 189 aa9.05□□□□□ -0.96
VPS53-213ENST00000572334 LAMB4A4D0S4 1761 aa9.04□□□□□ -0.96
VPS53-213ENST00000572334 NUP98P52948 1817 aa9.04□□□□□ -0.96
VPS53-213ENST00000572334 NFKBIEO00221 500 aa9.04□□□□□ -0.96
VPS53-213ENST00000572334 TOMM70O94826 608 aa9.04□□□□□ -0.96
VPS53-213ENST00000572334 CAMTA2O94983 1202 aa9.04□□□□□ -0.96
VPS53-213ENST00000572334 STARD3NLO95772 234 aa9.04□□□□□ -0.96
VPS53-213ENST00000572334 IL6STP40189 918 aaPredicted RBP9.04□□□□□ -0.96
VPS53-213ENST00000572334 TEFQ10587 303 aa9.04□□□□□ -0.96
VPS53-213ENST00000572334 TTC5Q8N0Z6 440 aa9.04□□□□□ -0.96
VPS53-213ENST00000572334 RNF181Q9P0P0 153 aa9.04□□□□□ -0.96
VPS53-213ENST00000572334 USP16Q9Y5T5 823 aa9.04□□□□□ -0.96
VPS53-213ENST00000572334 PIP4K2AP48426 406 aaPredicted RBP9.03□□□□□ -0.96
VPS53-213ENST00000572334 PRR5LQ6MZQ0 368 aa9.03□□□□□ -0.96
VPS53-213ENST00000572334 BICDL1Q6ZP65 573 aa9.03□□□□□ -0.96
VPS53-213ENST00000572334 CCDC24Q8N4L8 307 aa9.03□□□□□ -0.96
VPS53-213ENST00000572334 FMNL2Q96PY5 1086 aa9.03□□□□□ -0.96
VPS53-213ENST00000572334 TBC1D2BQ9UPU7 963 aa9.03□□□□□ -0.96
VPS53-213ENST00000572334 A0A087WZG4 1122 aa9.02□□□□□ -0.97
VPS53-213ENST00000572334 BTBD11A6QL63 1104 aa9.02□□□□□ -0.97
VPS53-213ENST00000572334 C1QBPQ07021 282 aaKnown RBP9.02□□□□□ -0.97
VPS53-213ENST00000572334 DCTN1Q14203 1278 aa9.02□□□□□ -0.97
VPS53-213ENST00000572334 MCM10Q7L590 875 aa9.02□□□□□ -0.97
VPS53-213ENST00000572334 C2CD5Q86YS7 1000 aa9.02□□□□□ -0.97
VPS53-213ENST00000572334 TTLL6Q8N841 843 aa9.02□□□□□ -0.97
VPS53-213ENST00000572334 RBM46Q8TBY0 533 aaKnown RBP9.02□□□□□ -0.97
VPS53-213ENST00000572334 TEX13AQ9BXU3 409 aaPredicted RBP9.02□□□□□ -0.97
VPS53-213ENST00000572334 POTECB2RU33 542 aa9.01□□□□□ -0.97
VPS53-213ENST00000572334 NBPF26B4DH59 902 aa9.01□□□□□ -0.97
VPS53-213ENST00000572334 NBPF10Q6P3W6 841 aaKnown RBP9.01□□□□□ -0.97
VPS53-213ENST00000572334 NBPF15Q8N660 670 aa9.01□□□□□ -0.97
VPS53-213ENST00000572334 RRAGCQ9HB90 399 aa9.01□□□□□ -0.97
VPS53-213ENST00000572334 H0YIN7 160 aa9□□□□□ -0.97
VPS53-213ENST00000572334 U2AF1L5P0DN76 240 aaPredicted RBP9□□□□□ -0.97
VPS53-213ENST00000572334 APLP1P51693 650 aa9□□□□□ -0.97
VPS53-213ENST00000572334 HTRA3P83110 453 aa9□□□□□ -0.97
VPS53-213ENST00000572334 U2AF1Q01081 240 aaKnown RBP eCLIP9□□□□□ -0.97
VPS53-213ENST00000572334 CFAP53Q96M91 514 aa9□□□□□ -0.97
VPS53-213ENST00000572334 PLEKHF1Q96S99 279 aa9□□□□□ -0.97
VPS53-213ENST00000572334 BRIP1Q9BX63 1249 aa9□□□□□ -0.97
VPS53-213ENST00000572334 ZNF330Q9Y3S2 320 aaPredicted RBP9□□□□□ -0.97
VPS53-213ENST00000572334 KDM2BQ8NHM5 1336 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 174.6 ms