RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 ADGRL3Q9HAR2 1447 aa27.78■■■□□ 2.04
VPS53-211ENST00000571805 LRRC59Q96AG4 307 aaKnown RBP27.78■■■□□ 2.04
VPS53-211ENST00000571805 PI4KAP2A4QPH2 592 aa27.77■■■□□ 2.04
VPS53-211ENST00000571805 CUL4AQ13619 759 aa27.77■■■□□ 2.04
VPS53-211ENST00000571805 PI4KAP1Q8N8J0 262 aa27.77■■■□□ 2.04
VPS53-211ENST00000571805 RHPN1Q8TCX5 695 aa27.77■■■□□ 2.04
VPS53-211ENST00000571805 CHMP4AQ9BY43 222 aa27.77■■■□□ 2.04
VPS53-211ENST00000571805 IL25Q9H293 177 aa27.76■■■□□ 2.03
VPS53-211ENST00000571805 SRGAP3O43295 1099 aa27.75■■■□□ 2.03
VPS53-211ENST00000571805 ZNF530Q6P9A1 599 aaPredicted RBP27.75■■■□□ 2.03
VPS53-211ENST00000571805 PI4K2BQ8TCG2 481 aa27.75■■■□□ 2.03
VPS53-211ENST00000571805 ZBTB7CA1YPR0 619 aa27.75■■■□□ 2.03
VPS53-211ENST00000571805 BTBD11A6QL63 1104 aa27.75■■■□□ 2.03
VPS53-211ENST00000571805 EPB41L2O43491 1005 aaKnown RBP27.75■■■□□ 2.03
VPS53-211ENST00000571805 TEFQ10587 303 aa27.75■■■□□ 2.03
VPS53-211ENST00000571805 PLEKHO1Q53GL0 409 aaPredicted RBP27.74■■■□□ 2.03
VPS53-211ENST00000571805 ZNF445P59923 1031 aa27.74■■■□□ 2.03
VPS53-211ENST00000571805 MPRIPQ6WCQ1 1025 aa27.74■■■□□ 2.03
VPS53-211ENST00000571805 ADCY9O60503 1353 aa27.74■■■□□ 2.03
VPS53-211ENST00000571805 NCAPD2Q15021 1401 aa27.73■■■□□ 2.03
VPS53-211ENST00000571805 KIF1BPQ96EK5 621 aa27.73■■■□□ 2.03
VPS53-211ENST00000571805 ANXA1P04083 346 aa27.72■■■□□ 2.03
VPS53-211ENST00000571805 CLCN1P35523 988 aa27.72■■■□□ 2.03
VPS53-211ENST00000571805 ZNF142P52746 1687 aaPredicted RBP27.72■■■□□ 2.03
VPS53-211ENST00000571805 AMOTQ4VCS5 1084 aa27.72■■■□□ 2.03
VPS53-211ENST00000571805 PRPF40AO75400 957 aaKnown RBP27.71■■■□□ 2.03
VPS53-211ENST00000571805 ARHGEF25Q86VW2 580 aa27.71■■■□□ 2.03
VPS53-211ENST00000571805 RNMTO43148 476 aaKnown RBP27.71■■■□□ 2.03
VPS53-211ENST00000571805 CAVIN1Q6NZI2 390 aaKnown RBP27.71■■■□□ 2.03
VPS53-211ENST00000571805 INTS4Q96HW7 963 aaKnown RBP27.71■■■□□ 2.03
VPS53-211ENST00000571805 GCP02774 474 aa27.7■■■□□ 2.03
VPS53-211ENST00000571805 PXDNQ92626 1479 aa27.7■■■□□ 2.02
VPS53-211ENST00000571805 HSPA4P34932 840 aa27.7■■■□□ 2.02
VPS53-211ENST00000571805 ZSCAN23Q3MJ62 389 aa27.7■■■□□ 2.02
VPS53-211ENST00000571805 GPT2Q8TD30 523 aa27.7■■■□□ 2.02
VPS53-211ENST00000571805 MAP4K4O95819 1239 aaPredicted RBP27.69■■■□□ 2.02
VPS53-211ENST00000571805 BRD1O95696 1058 aa27.68■■■□□ 2.02
VPS53-211ENST00000571805 NCLP19338 710 aaKnown RBP27.68■■■□□ 2.02
VPS53-211ENST00000571805 DBF4Q9UBU7 674 aaPredicted RBP27.68■■■□□ 2.02
VPS53-211ENST00000571805 SLIT3O75094 1523 aa27.68■■■□□ 2.02
VPS53-211ENST00000571805 CHAMP1Q96JM3 812 aa27.68■■■□□ 2.02
VPS53-211ENST00000571805 HEG1Q9ULI3 1381 aa27.68■■■□□ 2.02
VPS53-211ENST00000571805 OVOS2A0A0G2JMS6 1433 aa27.67■■■□□ 2.02
VPS53-211ENST00000571805 NASPP49321 788 aaPredicted RBP27.67■■■□□ 2.02
VPS53-211ENST00000571805 MTX1Q13505 466 aa27.67■■■□□ 2.02
VPS53-211ENST00000571805 HSP90AB4PQ58FF6 505 aa27.67■■■□□ 2.02
VPS53-211ENST00000571805 ORAI2Q96SN7 254 aa27.67■■■□□ 2.02
VPS53-211ENST00000571805 UPF3BQ9BZI7 483 aaKnown RBP27.67■■■□□ 2.02
VPS53-211ENST00000571805 SGSM2O43147 1006 aa27.66■■■□□ 2.02
VPS53-211ENST00000571805 USP42Q9H9J4 1324 aaKnown RBP27.66■■■□□ 2.02
VPS53-211ENST00000571805 CRYBG1Q9Y4K1 1723 aa27.66■■■□□ 2.02
VPS53-211ENST00000571805 PPP1R9BQ96SB3 815 aa27.66■■■□□ 2.02
VPS53-211ENST00000571805 ERBB4Q15303 1308 aa27.66■■■□□ 2.02
VPS53-211ENST00000571805 ESPNB1AK53 854 aa27.65■■■□□ 2.02
VPS53-211ENST00000571805 GIGYF1O75420 1035 aaPredicted RBP27.65■■■□□ 2.02
VPS53-211ENST00000571805 C1orf141Q5JVX7 400 aa27.65■■■□□ 2.02
VPS53-211ENST00000571805 TRHP20396 242 aaPredicted RBP27.65■■■□□ 2.02
VPS53-211ENST00000571805 RAD50Q92878 1312 aa27.64■■■□□ 2.01
VPS53-211ENST00000571805 XPCQ01831 940 aaPredicted RBP27.64■■■□□ 2.01
VPS53-211ENST00000571805 NOL8Q76FK4 1167 aaKnown RBP27.64■■■□□ 2.01
VPS53-211ENST00000571805 ANKRD24Q8TF21 1146 aa27.64■■■□□ 2.01
VPS53-211ENST00000571805 CAMTA1Q9Y6Y1 1673 aa27.63■■■□□ 2.01
VPS53-211ENST00000571805 CCDC173Q0VFZ6 552 aa27.63■■■□□ 2.01
VPS53-211ENST00000571805 PROSER3Q2NL68 480 aa27.63■■■□□ 2.01
VPS53-211ENST00000571805 FOXD4L5Q5VV16 416 aaPredicted RBP27.63■■■□□ 2.01
VPS53-211ENST00000571805 CNTROBQ8N137 903 aa27.63■■■□□ 2.01
VPS53-211ENST00000571805 FOXD4L4Q8WXT5 416 aaPredicted RBP27.63■■■□□ 2.01
VPS53-211ENST00000571805 MAP3K2Q9Y2U5 619 aa27.63■■■□□ 2.01
VPS53-211ENST00000571805 ALDH1L1O75891 902 aa27.63■■■□□ 2.01
VPS53-211ENST00000571805 TRIM44Q96DX7 344 aaPredicted RBP27.63■■■□□ 2.01
VPS53-211ENST00000571805 LSG1Q9H089 658 aaKnown RBP27.63■■■□□ 2.01
VPS53-211ENST00000571805 SIPA1L3O60292 1781 aaPredicted RBP27.62■■■□□ 2.01
VPS53-211ENST00000571805 TTC41PQ6P2S7 1318 aa27.62■■■□□ 2.01
VPS53-211ENST00000571805 KSR2Q6VAB6 950 aa27.62■■■□□ 2.01
VPS53-211ENST00000571805 RBM27Q9P2N5 1060 aaKnown RBP27.61■■■□□ 2.01
VPS53-211ENST00000571805 PLEKHG5O94827 1062 aa27.6■■■□□ 2.01
VPS53-211ENST00000571805 AXIN2Q9Y2T1 843 aa27.6■■■□□ 2.01
VPS53-211ENST00000571805 PRAMEF22A3QJZ6 481 aa27.6■■■□□ 2.01
VPS53-211ENST00000571805 NSFL1CQ9UNZ2 370 aaKnown RBP27.6■■■□□ 2.01
VPS53-211ENST00000571805 SNX14Q9Y5W7 946 aa27.6■■■□□ 2.01
VPS53-211ENST00000571805 TRPM3Q9HCF6 1732 aaPredicted RBP27.59■■■□□ 2.01
VPS53-211ENST00000571805 GLRX3O76003 335 aaKnown RBP27.58■■■□□ 2.01
VPS53-211ENST00000571805 C9orf78Q9NZ63 289 aaPredicted RBP27.58■■■□□ 2.01
VPS53-211ENST00000571805 TMEM63CQ9P1W3 806 aa27.58■■■□□ 2.01
VPS53-211ENST00000571805 RBSNQ9H1K0 784 aa27.58■■■□□ 2.01
VPS53-211ENST00000571805 ADAMTS7Q9UKP4 1686 aa27.58■■■□□ 2
VPS53-211ENST00000571805 OS9Q13438 667 aaPredicted RBP27.57■■■□□ 2
VPS53-211ENST00000571805 NPHP4O75161 1426 aaPredicted RBP27.57■■■□□ 2
VPS53-211ENST00000571805 PRIM1P49642 420 aaKnown RBP27.57■■■□□ 2
VPS53-211ENST00000571805 TTC14Q96N46 770 aa27.57■■■□□ 2
VPS53-211ENST00000571805 CWF19L2Q2TBE0 894 aaKnown RBP27.56■■■□□ 2
VPS53-211ENST00000571805 RASEFQ8IZ41 740 aa27.56■■■□□ 2
VPS53-211ENST00000571805 CLASRPQ8N2M8 674 aaKnown RBP27.56■■■□□ 2
VPS53-211ENST00000571805 CWC27Q6UX04 472 aaKnown RBP27.56■■■□□ 2
VPS53-211ENST00000571805 HYPKQ9NX55 129 aa27.56■■■□□ 2
VPS53-211ENST00000571805 LMTK3Q96Q04 1460 aa27.56■■■□□ 2
VPS53-211ENST00000571805 LMOD2Q6P5Q4 547 aa27.55■■■□□ 2
VPS53-211ENST00000571805 PA2G4Q9UQ80 394 aaKnown RBP27.55■■■□□ 2
VPS53-211ENST00000571805 MBD3O95983 291 aa27.54■■■□□ 2
VPS53-211ENST00000571805 ANP32BQ92688 251 aaKnown RBP27.54■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms