RNA–Protein interactions for RNA: ENST00000570828.5

CTDNEP1-205, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 3

Gene CTDNEP1, Length 986 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-205ENST00000570828 LGR6Q9HBX8 967 aa16.6■□□□□ 0.25
CTDNEP1-205ENST00000570828 CD2APQ9Y5K6 639 aa16.6■□□□□ 0.25
CTDNEP1-205ENST00000570828 MRC1P22897 1456 aa16.6■□□□□ 0.25
CTDNEP1-205ENST00000570828 MNX1P50219 401 aaPredicted RBP16.59■□□□□ 0.25
CTDNEP1-205ENST00000570828 GAS2L2Q8NHY3 880 aa16.59■□□□□ 0.25
CTDNEP1-205ENST00000570828 RPS6KA4O75676 772 aa16.58■□□□□ 0.24
CTDNEP1-205ENST00000570828 NUDCQ9Y266 331 aa16.58■□□□□ 0.24
CTDNEP1-205ENST00000570828 SCN11AQ9UI33 1791 aa16.57■□□□□ 0.24
CTDNEP1-205ENST00000570828 PPP2R1AP30153 589 aa16.57■□□□□ 0.24
CTDNEP1-205ENST00000570828 RFC4P35249 363 aa16.57■□□□□ 0.24
CTDNEP1-205ENST00000570828 CRKLP46109 303 aaKnown RBP16.57■□□□□ 0.24
CTDNEP1-205ENST00000570828 COL5A3P25940 1745 aaPredicted RBP16.56■□□□□ 0.24
CTDNEP1-205ENST00000570828 MMP10P09238 476 aa16.56■□□□□ 0.24
CTDNEP1-205ENST00000570828 ARHGEF1Q92888 912 aaKnown RBP16.56■□□□□ 0.24
CTDNEP1-205ENST00000570828 SLC39A6Q13433 755 aa16.55■□□□□ 0.24
CTDNEP1-205ENST00000570828 NLGN1Q8N2Q7 840 aa16.55■□□□□ 0.24
CTDNEP1-205ENST00000570828 GNAT3A8MTJ3 354 aa16.54■□□□□ 0.24
CTDNEP1-205ENST00000570828 GRIN3BO60391 1043 aa16.54■□□□□ 0.24
CTDNEP1-205ENST00000570828 YBX3P16989 372 aaKnown RBP eCLIP16.54■□□□□ 0.241e-6■■□□□ 13.3
CTDNEP1-205ENST00000570828 PRKAR2BP31323 418 aa16.54■□□□□ 0.24
CTDNEP1-205ENST00000570828 TEFQ10587 303 aa16.54■□□□□ 0.24
CTDNEP1-205ENST00000570828 ADAMTS7Q9UKP4 1686 aa16.53■□□□□ 0.24
CTDNEP1-205ENST00000570828 CICQ96RK0 1608 aaPredicted RBP16.53■□□□□ 0.24
CTDNEP1-205ENST00000570828 POTEMA6NI47 508 aa16.53■□□□□ 0.24
CTDNEP1-205ENST00000570828 U2AF1L5P0DN76 240 aaPredicted RBP16.53■□□□□ 0.24
CTDNEP1-205ENST00000570828 U2AF1Q01081 240 aaKnown RBP eCLIP16.53■□□□□ 0.24
CTDNEP1-205ENST00000570828 DNAJC10Q8IXB1 793 aa16.53■□□□□ 0.24
CTDNEP1-205ENST00000570828 TTC5Q8N0Z6 440 aa16.53■□□□□ 0.24
CTDNEP1-205ENST00000570828 RSPH6AQ9H0K4 717 aa16.53■□□□□ 0.24
CTDNEP1-205ENST00000570828 TJP1Q07157 1748 aa16.53■□□□□ 0.24
CTDNEP1-205ENST00000570828 KCPQ6ZWJ8 1503 aa16.52■□□□□ 0.24
CTDNEP1-205ENST00000570828 GYS1P13807 737 aa16.52■□□□□ 0.24
CTDNEP1-205ENST00000570828 ZNF784Q8NCA9 323 aaPredicted RBP16.52■□□□□ 0.24
CTDNEP1-205ENST00000570828 CCDC87Q9NVE4 849 aa16.52■□□□□ 0.24
CTDNEP1-205ENST00000570828 INTS5Q6P9B9 1019 aaKnown RBP16.51■□□□□ 0.23
CTDNEP1-205ENST00000570828 VSIG10Q8N0Z9 540 aa16.51■□□□□ 0.23
CTDNEP1-205ENST00000570828 USP42Q9H9J4 1324 aaKnown RBP16.5■□□□□ 0.23
CTDNEP1-205ENST00000570828 ASTLQ6HA08 431 aaPredicted RBP16.5■□□□□ 0.23
CTDNEP1-205ENST00000570828 IL17REQ8NFR9 667 aa16.5■□□□□ 0.23
CTDNEP1-205ENST00000570828 PHACTR3Q96KR7 559 aa16.5■□□□□ 0.23
CTDNEP1-205ENST00000570828 PARP3Q9Y6F1 533 aa16.5■□□□□ 0.23
CTDNEP1-205ENST00000570828 FCHSD2O94868 740 aa16.49■□□□□ 0.23
CTDNEP1-205ENST00000570828 CYP19A1P11511 503 aaPredicted RBP16.49■□□□□ 0.23
CTDNEP1-205ENST00000570828 SRP68Q9UHB9 627 aaKnown RBP16.49■□□□□ 0.23
CTDNEP1-205ENST00000570828 SOS1Q07889 1333 aaPredicted RBP16.48■□□□□ 0.23
CTDNEP1-205ENST00000570828 C4AP0C0L4 1744 aa16.48■□□□□ 0.23
CTDNEP1-205ENST00000570828 C10orf71Q711Q0 1435 aa16.48■□□□□ 0.23
CTDNEP1-205ENST00000570828 ZNF790Q6PG37 636 aa16.48■□□□□ 0.23
CTDNEP1-205ENST00000570828 METRNQ9UJH8 293 aa16.48■□□□□ 0.23
CTDNEP1-205ENST00000570828 WWC3Q9ULE0 1092 aa16.48■□□□□ 0.23
CTDNEP1-205ENST00000570828 CEMIPQ8WUJ3 1361 aa16.48■□□□□ 0.23
CTDNEP1-205ENST00000570828 ZPR1O75312 459 aa16.47■□□□□ 0.23
CTDNEP1-205ENST00000570828 STARD3NLO95772 234 aa16.47■□□□□ 0.23
CTDNEP1-205ENST00000570828 FKBP8Q14318 412 aa16.47■□□□□ 0.23
CTDNEP1-205ENST00000570828 POTEGQ6S5H5 508 aa16.47■□□□□ 0.23
CTDNEP1-205ENST00000570828 SLC39A7Q92504 469 aa16.47■□□□□ 0.23
CTDNEP1-205ENST00000570828 RTF1Q92541 710 aaKnown RBP16.47■□□□□ 0.23
CTDNEP1-205ENST00000570828 MS4A3Q96HJ5 214 aa16.47■□□□□ 0.23
CTDNEP1-205ENST00000570828 ZBTB1Q9Y2K1 713 aa16.47■□□□□ 0.23
CTDNEP1-205ENST00000570828 MYH14Q7Z406 1995 aaKnown RBP16.47■□□□□ 0.23
CTDNEP1-205ENST00000570828 COL15A1P39059 1388 aa16.47■□□□□ 0.23
CTDNEP1-205ENST00000570828 PXDNLA1KZ92 1463 aa16.47■□□□□ 0.23
CTDNEP1-205ENST00000570828 C7P10643 843 aa16.46■□□□□ 0.23
CTDNEP1-205ENST00000570828 ZNF496Q96IT1 587 aaPredicted RBP16.46■□□□□ 0.23
CTDNEP1-205ENST00000570828 CHD4Q14839 1912 aa16.46■□□□□ 0.23
CTDNEP1-205ENST00000570828 NEFMP07197 916 aa16.45■□□□□ 0.22
CTDNEP1-205ENST00000570828 TGFB2P61812 414 aa16.45■□□□□ 0.22
CTDNEP1-205ENST00000570828 HEG1Q9ULI3 1381 aa16.45■□□□□ 0.22
CTDNEP1-205ENST00000570828 UBR2Q8IWV8 1755 aa16.44■□□□□ 0.22
CTDNEP1-205ENST00000570828 BTBD11A6QL63 1104 aa16.44■□□□□ 0.22
CTDNEP1-205ENST00000570828 ATMINO43313 823 aaPredicted RBP16.44■□□□□ 0.22
CTDNEP1-205ENST00000570828 CANXP27824 592 aaKnown RBP16.44■□□□□ 0.22
CTDNEP1-205ENST00000570828 USPL1Q5W0Q7 1092 aa16.44■□□□□ 0.22
CTDNEP1-205ENST00000570828 FMNL2Q96PY5 1086 aa16.44■□□□□ 0.22
CTDNEP1-205ENST00000570828 TEX13AQ9BXU3 409 aaPredicted RBP16.44■□□□□ 0.22
CTDNEP1-205ENST00000570828 DDR1Q08345 913 aa16.43■□□□□ 0.22
CTDNEP1-205ENST00000570828 NARFQ9UHQ1 456 aa16.43■□□□□ 0.22
CTDNEP1-205ENST00000570828 VIRMAQ69YN4 1812 aaKnown RBP16.42■□□□□ 0.22
CTDNEP1-205ENST00000570828 A0A0G2JLW4 131 aa16.42■□□□□ 0.22
CTDNEP1-205ENST00000570828 MCM10Q7L590 875 aa16.42■□□□□ 0.22
CTDNEP1-205ENST00000570828 A0A087WZG4 1122 aa16.41■□□□□ 0.22
CTDNEP1-205ENST00000570828 HTATSF1O43719 755 aaKnown RBP16.41■□□□□ 0.22
CTDNEP1-205ENST00000570828 DPEP1P16444 411 aa16.41■□□□□ 0.22
CTDNEP1-205ENST00000570828 BCS1LQ9Y276 419 aa16.41■□□□□ 0.22
CTDNEP1-205ENST00000570828 POLRMTO00411 1230 aaKnown RBP16.4■□□□□ 0.22
CTDNEP1-205ENST00000570828 RALBP1Q15311 655 aa16.4■□□□□ 0.22
CTDNEP1-205ENST00000570828 NPM2Q86SE8 214 aaKnown RBP16.4■□□□□ 0.22
CTDNEP1-205ENST00000570828 ZNF330Q9Y3S2 320 aaPredicted RBP16.4■□□□□ 0.22
CTDNEP1-205ENST00000570828 SIPA1L3O60292 1781 aaPredicted RBP16.4■□□□□ 0.22
CTDNEP1-205ENST00000570828 KIF13BQ9NQT8 1826 aa16.4■□□□□ 0.22
CTDNEP1-205ENST00000570828 KCNQ3O43525 872 aa16.39■□□□□ 0.21
CTDNEP1-205ENST00000570828 TM4SF1P30408 202 aa16.39■□□□□ 0.21
CTDNEP1-205ENST00000570828 EIF5P55010 431 aaKnown RBP16.39■□□□□ 0.21
CTDNEP1-205ENST00000570828 DCTN1Q14203 1278 aa16.39■□□□□ 0.21
CTDNEP1-205ENST00000570828 MAMSTRQ6ZN01 415 aa16.39■□□□□ 0.21
CTDNEP1-205ENST00000570828 MAPK8IP3Q9UPT6 1336 aa16.39■□□□□ 0.21
CTDNEP1-205ENST00000570828 ATP10DQ9P241 1426 aa16.38■□□□□ 0.21
CTDNEP1-205ENST00000570828 DDX10Q13206 875 aaKnown RBP16.38■□□□□ 0.21
CTDNEP1-205ENST00000570828 NFIXQ14938 502 aa16.38■□□□□ 0.21
CTDNEP1-205ENST00000570828 PNNQ9H307 717 aaKnown RBP16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 111.5 ms