RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 NUP98P52948 1817 aa17■□□□□ 0.31
CLK3-224ENST00000568605 CACNA1FO60840 1977 aa17■□□□□ 0.31
CLK3-224ENST00000568605 APAF1O14727 1248 aa17■□□□□ 0.31
CLK3-224ENST00000568605 SNRPA1P09661 255 aaKnown RBP17■□□□□ 0.31
CLK3-224ENST00000568605 RFC4P35249 363 aa17■□□□□ 0.31
CLK3-224ENST00000568605 PTGER2P43116 358 aa17■□□□□ 0.31
CLK3-224ENST00000568605 CALD1Q05682 793 aaKnown RBP17■□□□□ 0.31
CLK3-224ENST00000568605 NPM2Q86SE8 214 aaKnown RBP17■□□□□ 0.31
CLK3-224ENST00000568605 TSPYL4Q9UJ04 414 aa17■□□□□ 0.31
CLK3-224ENST00000568605 ANKRD36CQ5JPF3 1778 aa17■□□□□ 0.31
CLK3-224ENST00000568605 SOS1Q07889 1333 aaPredicted RBP16.99■□□□□ 0.31
CLK3-224ENST00000568605 AMIGO3Q86WK7 504 aa16.99■□□□□ 0.31
CLK3-224ENST00000568605 SGIP1Q9BQI5 828 aa16.99■□□□□ 0.31
CLK3-224ENST00000568605 KCNQ3O43525 872 aa16.98■□□□□ 0.31
CLK3-224ENST00000568605 INTS5Q6P9B9 1019 aaKnown RBP16.98■□□□□ 0.31
CLK3-224ENST00000568605 ARXQ96QS3 562 aa16.98■□□□□ 0.31
CLK3-224ENST00000568605 ZBTB1Q9Y2K1 713 aa16.98■□□□□ 0.31
CLK3-224ENST00000568605 SRCAPQ6ZRS2 3230 aa16.97■□□□□ 0.31
CLK3-224ENST00000568605 MSL1Q68DK7 614 aa16.97■□□□□ 0.31
CLK3-224ENST00000568605 ARHGEF1Q92888 912 aaKnown RBP16.97■□□□□ 0.31
CLK3-224ENST00000568605 TRIM35Q9UPQ4 493 aa16.97■□□□□ 0.31
CLK3-224ENST00000568605 NRXN2Q9P2S2 1712 aa16.96■□□□□ 0.31
CLK3-224ENST00000568605 CHD4Q14839 1912 aa16.96■□□□□ 0.31
CLK3-224ENST00000568605 A0A087WZG4 1122 aa16.96■□□□□ 0.31
CLK3-224ENST00000568605 MIS18AQ9NYP9 233 aa16.96■□□□□ 0.31
CLK3-224ENST00000568605 USP42Q9H9J4 1324 aaKnown RBP16.96■□□□□ 0.3
CLK3-224ENST00000568605 BRCA1P38398 1863 aaKnown RBP16.95■□□□□ 0.3
CLK3-224ENST00000568605 ZPR1O75312 459 aa16.95■□□□□ 0.3
CLK3-224ENST00000568605 CANXP27824 592 aaKnown RBP16.95■□□□□ 0.3
CLK3-224ENST00000568605 IL6STP40189 918 aaPredicted RBP16.95■□□□□ 0.3
CLK3-224ENST00000568605 SMIM5Q71RC9 77 aa16.95■□□□□ 0.3
CLK3-224ENST00000568605 NLGN1Q8N2Q7 840 aa16.95■□□□□ 0.3
CLK3-224ENST00000568605 N4BP2Q86UW6 1770 aaPredicted RBP16.94■□□□□ 0.3
CLK3-224ENST00000568605 DLEC1Q9Y238 1755 aa16.94■□□□□ 0.3
CLK3-224ENST00000568605 EIF4A1P60842 406 aaKnown RBP16.94■□□□□ 0.3
CLK3-224ENST00000568605 FAM9BQ8IZU0 186 aa16.94■□□□□ 0.3
CLK3-224ENST00000568605 ZNF330Q9Y3S2 320 aaPredicted RBP16.94■□□□□ 0.3
CLK3-224ENST00000568605 LAS1LQ9Y4W2 734 aaKnown RBP16.94■□□□□ 0.3
CLK3-224ENST00000568605 KIAA1551Q9HCM1 1747 aa16.93■□□□□ 0.3
CLK3-224ENST00000568605 CCER2I3L3R5 266 aa16.93■□□□□ 0.3
CLK3-224ENST00000568605 CCDC27Q2M243 656 aa16.93■□□□□ 0.3
CLK3-224ENST00000568605 NCBP3Q53F19 620 aaKnown RBP16.93■□□□□ 0.3
CLK3-224ENST00000568605 KLHL34Q8N239 644 aa16.93■□□□□ 0.3
CLK3-224ENST00000568605 CFAP44Q96MT7 982 aa16.93■□□□□ 0.3
CLK3-224ENST00000568605 GIGYF1O75420 1035 aaPredicted RBP16.92■□□□□ 0.3
CLK3-224ENST00000568605 GYS1P13807 737 aa16.92■□□□□ 0.3
CLK3-224ENST00000568605 EIF5P55010 431 aaKnown RBP16.92■□□□□ 0.3
CLK3-224ENST00000568605 GNAI1P63096 354 aa16.92■□□□□ 0.3
CLK3-224ENST00000568605 DIEXFQ68CQ4 756 aaKnown RBP16.92■□□□□ 0.3
CLK3-224ENST00000568605 FHDC1Q9C0D6 1143 aaPredicted RBP16.92■□□□□ 0.3
CLK3-224ENST00000568605 IFT57Q9NWB7 429 aa16.92■□□□□ 0.3
CLK3-224ENST00000568605 NARFQ9UHQ1 456 aa16.92■□□□□ 0.3
CLK3-224ENST00000568605 ERBB4Q15303 1308 aa16.92■□□□□ 0.3
CLK3-224ENST00000568605 CACNA1SQ13698 1873 aa16.91■□□□□ 0.3
CLK3-224ENST00000568605 CHL1O00533 1208 aa16.91■□□□□ 0.3
CLK3-224ENST00000568605 NGEFQ8N5V2 710 aa16.91■□□□□ 0.3
CLK3-224ENST00000568605 USP16Q9Y5T5 823 aa16.91■□□□□ 0.3
CLK3-224ENST00000568605 ARFGEF2Q9Y6D5 1785 aa16.9■□□□□ 0.3
CLK3-224ENST00000568605 PRAMEF22A3QJZ6 481 aa16.9■□□□□ 0.3
CLK3-224ENST00000568605 DCAF8L1A6NGE4 600 aa16.9■□□□□ 0.3
CLK3-224ENST00000568605 A1BGP04217 495 aa16.9■□□□□ 0.3
CLK3-224ENST00000568605 SRP68Q9UHB9 627 aaKnown RBP16.9■□□□□ 0.3
CLK3-224ENST00000568605 ARFGEF1Q9Y6D6 1849 aa16.89■□□□□ 0.29
CLK3-224ENST00000568605 ANKRD31Q8N7Z5 1873 aa16.89■□□□□ 0.29
CLK3-224ENST00000568605 MMP10P09238 476 aa16.89■□□□□ 0.29
CLK3-224ENST00000568605 USPL1Q5W0Q7 1092 aa16.89■□□□□ 0.29
CLK3-224ENST00000568605 PARP3Q9Y6F1 533 aa16.89■□□□□ 0.29
CLK3-224ENST00000568605 HOXB7P09629 217 aa16.88■□□□□ 0.29
CLK3-224ENST00000568605 SYT17Q9BSW7 474 aa16.88■□□□□ 0.29
CLK3-224ENST00000568605 C10orf71Q711Q0 1435 aa16.87■□□□□ 0.29
CLK3-224ENST00000568605 DZIP3Q86Y13 1208 aaKnown RBP16.87■□□□□ 0.29
CLK3-224ENST00000568605 WWC1Q8IX03 1113 aa16.87■□□□□ 0.29
CLK3-224ENST00000568605 MBIPQ9NS73 344 aa16.87■□□□□ 0.29
CLK3-224ENST00000568605 ZNF652Q9Y2D9 606 aa16.87■□□□□ 0.29
CLK3-224ENST00000568605 CD2APQ9Y5K6 639 aa16.87■□□□□ 0.29
CLK3-224ENST00000568605 IL16Q14005 1332 aa16.87■□□□□ 0.29
CLK3-224ENST00000568605 ZNF853P0CG23 659 aa16.86■□□□□ 0.29
CLK3-224ENST00000568605 FKBP8Q14318 412 aa16.86■□□□□ 0.29
CLK3-224ENST00000568605 RGL2O15211 777 aa16.85■□□□□ 0.29
CLK3-224ENST00000568605 PIP4K2AP48426 406 aaPredicted RBP16.85■□□□□ 0.29
CLK3-224ENST00000568605 CHMP4AQ9BY43 222 aa16.85■□□□□ 0.29
CLK3-224ENST00000568605 TBC1D2BQ9UPU7 963 aa16.85■□□□□ 0.29
CLK3-224ENST00000568605 CARMIL3Q8ND23 1372 aa16.85■□□□□ 0.29
CLK3-224ENST00000568605 COL11A2P13942 1736 aaPredicted RBP16.84■□□□□ 0.29
CLK3-224ENST00000568605 EIF2S2P20042 333 aaKnown RBP16.84■□□□□ 0.29
CLK3-224ENST00000568605 KIF6Q6ZMV9 814 aa16.84■□□□□ 0.29
CLK3-224ENST00000568605 NBPF26B4DH59 902 aa16.83■□□□□ 0.28
CLK3-224ENST00000568605 NBPF10Q6P3W6 841 aaKnown RBP16.83■□□□□ 0.28
CLK3-224ENST00000568605 NBPF15Q8N660 670 aa16.83■□□□□ 0.28
CLK3-224ENST00000568605 CAMTA2O94983 1202 aa16.82■□□□□ 0.28
CLK3-224ENST00000568605 MYL6BP14649 208 aa16.82■□□□□ 0.28
CLK3-224ENST00000568605 HDGFL1Q5TGJ6 251 aa16.82■□□□□ 0.28
CLK3-224ENST00000568605 WDR63Q8IWG1 891 aa16.82■□□□□ 0.28
CLK3-224ENST00000568605 LAMB2P55268 1798 aa16.82■□□□□ 0.28
CLK3-224ENST00000568605 SENP3-EIF4A1A0A087X0R7 540 aa16.81■□□□□ 0.28
CLK3-224ENST00000568605 POLRMTO00411 1230 aaKnown RBP16.81■□□□□ 0.28
CLK3-224ENST00000568605 DDR1Q08345 913 aa16.81■□□□□ 0.28
CLK3-224ENST00000568605 NFIXQ14938 502 aa16.81■□□□□ 0.28
CLK3-224ENST00000568605 DUSP27Q5VZP5 1158 aa16.81■□□□□ 0.28
CLK3-224ENST00000568605 CLEC4GQ6UXB4 293 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 171.7 ms