RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 NFIXQ14938 502 aa22.34■■□□□ 1.17
CLK3-223ENST00000568488 CREBZFQ9NS37 354 aa22.34■■□□□ 1.17
CLK3-223ENST00000568488 NFKBIEO00221 500 aa22.33■■□□□ 1.17
CLK3-223ENST00000568488 FOXN1O15353 648 aa22.33■■□□□ 1.17
CLK3-223ENST00000568488 SERPINB2P05120 415 aa22.33■■□□□ 1.17
CLK3-223ENST00000568488 DNAJC10Q8IXB1 793 aa22.33■■□□□ 1.17
CLK3-223ENST00000568488 H0YIN7 160 aa22.32■■□□□ 1.16
CLK3-223ENST00000568488 CHADLQ6NUI6 762 aa22.32■■□□□ 1.16
CLK3-223ENST00000568488 ZNF219Q9P2Y4 722 aaPredicted RBP22.32■■□□□ 1.16
CLK3-223ENST00000568488 ERFEQ4G0M1 354 aa22.3■■□□□ 1.16
CLK3-223ENST00000568488 NARFQ9UHQ1 456 aa22.3■■□□□ 1.16
CLK3-223ENST00000568488 CCDC88AQ3V6T2 1871 aa22.3■■□□□ 1.16
CLK3-223ENST00000568488 SOS1Q07889 1333 aaPredicted RBP22.3■■□□□ 1.16
CLK3-223ENST00000568488 AIDAQ96BJ3 306 aa22.29■■□□□ 1.16
CLK3-223ENST00000568488 POLR3GLQ9BT43 218 aa22.29■■□□□ 1.16
CLK3-223ENST00000568488 PRDM10Q9NQV6 1147 aa22.29■■□□□ 1.16
CLK3-223ENST00000568488 TIAM2Q8IVF5 1701 aa22.28■■□□□ 1.16
CLK3-223ENST00000568488 AEBP1Q8IUX7 1158 aa22.28■■□□□ 1.16
CLK3-223ENST00000568488 ZNF622Q969S3 477 aaKnown RBP eCLIP22.28■■□□□ 1.163e-6■□□□□ 10
CLK3-223ENST00000568488 TJP1Q07157 1748 aa22.28■■□□□ 1.16
CLK3-223ENST00000568488 SLC34A2O95436 690 aa22.27■■□□□ 1.16
CLK3-223ENST00000568488 POTEIP0CG38 1075 aa22.27■■□□□ 1.16
CLK3-223ENST00000568488 POTEJP0CG39 1038 aa22.27■■□□□ 1.16
CLK3-223ENST00000568488 BICDL1Q6ZP65 573 aa22.27■■□□□ 1.16
CLK3-223ENST00000568488 AFDNP55196 1824 aaKnown RBP22.27■■□□□ 1.15
CLK3-223ENST00000568488 C21orf2O43822 256 aa22.26■■□□□ 1.15
CLK3-223ENST00000568488 CYP19A1P11511 503 aaPredicted RBP22.26■■□□□ 1.15
CLK3-223ENST00000568488 CTCFP49711 727 aaPredicted RBP22.26■■□□□ 1.15
CLK3-223ENST00000568488 BCL2L12Q9HB09 334 aa22.25■■□□□ 1.15
CLK3-223ENST00000568488 ADAMTS7Q9UKP4 1686 aa22.24■■□□□ 1.15
CLK3-223ENST00000568488 DDNO94850 711 aaPredicted RBP22.24■■□□□ 1.15
CLK3-223ENST00000568488 ZBTB1Q9Y2K1 713 aa22.24■■□□□ 1.15
CLK3-223ENST00000568488 COL15A1P39059 1388 aa22.24■■□□□ 1.15
CLK3-223ENST00000568488 CNTNAP1P78357 1384 aa22.24■■□□□ 1.15
CLK3-223ENST00000568488 CARMIL3Q8ND23 1372 aa22.24■■□□□ 1.15
CLK3-223ENST00000568488 SLC39A6Q13433 755 aa22.23■■□□□ 1.15
CLK3-223ENST00000568488 SULT6B1Q6IMI4 303 aa22.23■■□□□ 1.15
CLK3-223ENST00000568488 CANXP27824 592 aaKnown RBP22.21■■□□□ 1.15
CLK3-223ENST00000568488 VEGFBP49765 207 aa22.21■■□□□ 1.15
CLK3-223ENST00000568488 LBX1P52954 281 aa22.21■■□□□ 1.15
CLK3-223ENST00000568488 CCDC24Q8N4L8 307 aa22.21■■□□□ 1.15
CLK3-223ENST00000568488 DLEC1Q9Y238 1755 aa22.2■■□□□ 1.14
CLK3-223ENST00000568488 SLC52A2Q9HAB3 445 aa22.2■■□□□ 1.14
CLK3-223ENST00000568488 LGR6Q9HBX8 967 aa22.2■■□□□ 1.14
CLK3-223ENST00000568488 NRXN2Q9P2S2 1712 aa22.2■■□□□ 1.14
CLK3-223ENST00000568488 PDE6BP35913 854 aa22.19■■□□□ 1.14
CLK3-223ENST00000568488 TAOK3Q9H2K8 898 aa22.19■■□□□ 1.14
CLK3-223ENST00000568488 FAM161AQ3B820 660 aa22.18■■□□□ 1.14
CLK3-223ENST00000568488 AKAP4Q5JQC9 854 aa22.18■■□□□ 1.14
CLK3-223ENST00000568488 IQCA1LA6NCM1 817 aa22.17■■□□□ 1.14
CLK3-223ENST00000568488 TMEM88BA6NKF7 163 aa22.17■■□□□ 1.14
CLK3-223ENST00000568488 LDHDQ86WU2 507 aa22.17■■□□□ 1.14
CLK3-223ENST00000568488 BRIP1Q9BX63 1249 aa22.17■■□□□ 1.14
CLK3-223ENST00000568488 PDZRN3Q9UPQ7 1066 aa22.17■■□□□ 1.14
CLK3-223ENST00000568488 PASKQ96RG2 1323 aa22.16■■□□□ 1.14
CLK3-223ENST00000568488 TBC1D9BQ66K14 1250 aa22.16■■□□□ 1.14
CLK3-223ENST00000568488 WBP1LQ9NX94 342 aa22.16■■□□□ 1.14
CLK3-223ENST00000568488 CLEC11AQ9Y240 323 aa22.16■■□□□ 1.14
CLK3-223ENST00000568488 EAPPQ56P03 285 aaPredicted RBP22.15■■□□□ 1.14
CLK3-223ENST00000568488 ABHD8Q96I13 439 aa22.15■■□□□ 1.14
CLK3-223ENST00000568488 NPHP1O15259 732 aa22.14■■□□□ 1.13
CLK3-223ENST00000568488 TAF1DQ9H5J8 278 aaPredicted RBP22.14■■□□□ 1.13
CLK3-223ENST00000568488 SCN11AQ9UI33 1791 aa22.14■■□□□ 1.13
CLK3-223ENST00000568488 DICER1Q9UPY3 1922 aaKnown RBP22.14■■□□□ 1.13
CLK3-223ENST00000568488 LTBP3Q9NS15 1303 aa22.13■■□□□ 1.13
CLK3-223ENST00000568488 A0A087WZG4 1122 aa22.13■■□□□ 1.13
CLK3-223ENST00000568488 RNMTO43148 476 aaKnown RBP22.13■■□□□ 1.13
CLK3-223ENST00000568488 PRR5LQ6MZQ0 368 aa22.13■■□□□ 1.13
CLK3-223ENST00000568488 ZNF330Q9Y3S2 320 aaPredicted RBP22.13■■□□□ 1.13
CLK3-223ENST00000568488 STARD3NLO95772 234 aa22.12■■□□□ 1.13
CLK3-223ENST00000568488 MORC1Q86VD1 984 aa22.12■■□□□ 1.13
CLK3-223ENST00000568488 CNKSR1Q969H4 720 aa22.12■■□□□ 1.13
CLK3-223ENST00000568488 FER1L6Q2WGJ9 1857 aa22.11■■□□□ 1.13
CLK3-223ENST00000568488 ITGBL1O95965 494 aaPredicted RBP22.11■■□□□ 1.13
CLK3-223ENST00000568488 EIF5P55010 431 aaKnown RBP22.11■■□□□ 1.13
CLK3-223ENST00000568488 DEFB115Q30KQ5 88 aa22.11■■□□□ 1.13
CLK3-223ENST00000568488 VSIG10Q8N0Z9 540 aa22.11■■□□□ 1.13
CLK3-223ENST00000568488 HSPA8P11142 646 aaKnown RBP22.1■■□□□ 1.13
CLK3-223ENST00000568488 PRPF40BQ6NWY9 871 aaKnown RBP22.1■■□□□ 1.13
CLK3-223ENST00000568488 TBC1D2BQ9UPU7 963 aa22.1■■□□□ 1.13
CLK3-223ENST00000568488 IL13P35225 146 aa22.09■■□□□ 1.13
CLK3-223ENST00000568488 SOGA3Q5TF21 947 aa22.09■■□□□ 1.13
CLK3-223ENST00000568488 PANK3Q9H999 370 aa22.09■■□□□ 1.13
CLK3-223ENST00000568488 CCDC85CA6NKD9 419 aa22.08■■□□□ 1.13
CLK3-223ENST00000568488 STYK1Q6J9G0 422 aa22.08■■□□□ 1.13
CLK3-223ENST00000568488 L3MBTL3Q96JM7 780 aaPredicted RBP22.08■■□□□ 1.13
CLK3-223ENST00000568488 ANKRD31Q8N7Z5 1873 aa22.08■■□□□ 1.13
CLK3-223ENST00000568488 MAP2K1Q02750 393 aaPredicted RBP22.07■■□□□ 1.12
CLK3-223ENST00000568488 MLLT1Q03111 559 aaPredicted RBP22.07■■□□□ 1.12
CLK3-223ENST00000568488 TTC5Q8N0Z6 440 aa22.07■■□□□ 1.12
CLK3-223ENST00000568488 CNBD1Q8NA66 436 aa22.07■■□□□ 1.12
CLK3-223ENST00000568488 SETDB2Q96T68 719 aa22.07■■□□□ 1.12
CLK3-223ENST00000568488 HACL1Q9UJ83 578 aa22.07■■□□□ 1.12
CLK3-223ENST00000568488 HMOX1P09601 288 aa22.06■■□□□ 1.12
CLK3-223ENST00000568488 SRGNP10124 158 aa22.06■■□□□ 1.12
CLK3-223ENST00000568488 ST5P78524 1137 aa22.06■■□□□ 1.12
CLK3-223ENST00000568488 MAP1SQ66K74 1059 aaPredicted RBP22.06■■□□□ 1.12
CLK3-223ENST00000568488 NPM2Q86SE8 214 aaKnown RBP22.06■■□□□ 1.12
CLK3-223ENST00000568488 MASTLQ96GX5 879 aa22.06■■□□□ 1.12
CLK3-223ENST00000568488 ABT1Q9ULW3 272 aaKnown RBP22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 104.1 ms