RNA–Protein interactions for RNA: ENST00000567935.1

COMMD4-221, Transcript of COMM domain containing 4, humanhuman

TSL 3

Gene COMMD4, Length 502 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-221ENST00000567935 VAMP4O75379 141 aa18.65■□□□□ 0.58
COMMD4-221ENST00000567935 IL2RBP14784 551 aa18.65■□□□□ 0.58
COMMD4-221ENST00000567935 ANKRD24Q8TF21 1146 aa18.65■□□□□ 0.58
COMMD4-221ENST00000567935 SOS1Q07889 1333 aaPredicted RBP18.65■□□□□ 0.58
COMMD4-221ENST00000567935 TWISTNBQ3B726 338 aaPredicted RBP18.64■□□□□ 0.57
COMMD4-221ENST00000567935 NBPF6Q5VWK0 638 aa18.64■□□□□ 0.57
COMMD4-221ENST00000567935 CENPQQ7L2Z9 268 aaPredicted RBP18.64■□□□□ 0.57
COMMD4-221ENST00000567935 DZIP1LQ8IYY4 767 aaKnown RBP18.64■□□□□ 0.57
COMMD4-221ENST00000567935 ARHGAP45Q92619 1136 aa18.64■□□□□ 0.57
COMMD4-221ENST00000567935 NBPF4Q96M43 638 aa18.64■□□□□ 0.57
COMMD4-221ENST00000567935 DCTN1Q14203 1278 aa18.63■□□□□ 0.57
COMMD4-221ENST00000567935 PLEKHO1Q53GL0 409 aaPredicted RBP18.63■□□□□ 0.57
COMMD4-221ENST00000567935 ATF7IPQ6VMQ6 1270 aa18.63■□□□□ 0.57
COMMD4-221ENST00000567935 MCM10Q7L590 875 aa18.63■□□□□ 0.57
COMMD4-221ENST00000567935 FTSJ3Q8IY81 847 aaKnown RBP18.63■□□□□ 0.57
COMMD4-221ENST00000567935 ERBB3P21860 1342 aa18.63■□□□□ 0.57
COMMD4-221ENST00000567935 LY75O60449 1722 aa18.63■□□□□ 0.57
COMMD4-221ENST00000567935 BCL2L13Q9BXK5 485 aa18.62■□□□□ 0.57
COMMD4-221ENST00000567935 NLRP2Q9NX02 1062 aa18.62■□□□□ 0.57
COMMD4-221ENST00000567935 RGPD2P0DJD1 1756 aa18.61■□□□□ 0.57
COMMD4-221ENST00000567935 PANK1Q8TE04 598 aa18.61■□□□□ 0.57
COMMD4-221ENST00000567935 CLUAP1Q96AJ1 413 aa18.61■□□□□ 0.57
COMMD4-221ENST00000567935 CHMP4BQ9H444 224 aaKnown RBP18.61■□□□□ 0.57
COMMD4-221ENST00000567935 NMRK2Q9NPI5 230 aa18.61■□□□□ 0.57
COMMD4-221ENST00000567935 PCNTO95613 3336 aa18.61■□□□□ 0.57
COMMD4-221ENST00000567935 CICQ96RK0 1608 aaPredicted RBP18.6■□□□□ 0.57
COMMD4-221ENST00000567935 KDM2BQ8NHM5 1336 aa18.6■□□□□ 0.57
COMMD4-221ENST00000567935 MVPQ14764 893 aaKnown RBP18.6■□□□□ 0.57
COMMD4-221ENST00000567935 TSHZ2Q9NRE2 1034 aa18.6■□□□□ 0.57
COMMD4-221ENST00000567935 COG6Q9Y2V7 657 aa18.6■□□□□ 0.57
COMMD4-221ENST00000567935 AKAP4Q5JQC9 854 aa18.59■□□□□ 0.57
COMMD4-221ENST00000567935 MRPL50Q8N5N7 158 aaKnown RBP18.59■□□□□ 0.57
COMMD4-221ENST00000567935 SYTL4Q96C24 671 aaPredicted RBP18.59■□□□□ 0.57
COMMD4-221ENST00000567935 CCNL1Q9UK58 526 aaPredicted RBP18.59■□□□□ 0.57
COMMD4-221ENST00000567935 NOB1Q9ULX3 412 aaKnown RBP18.59■□□□□ 0.57
COMMD4-221ENST00000567935 DDX19BQ9UMR2 479 aa18.59■□□□□ 0.57
COMMD4-221ENST00000567935 CEMIPQ8WUJ3 1361 aa18.58■□□□□ 0.57
COMMD4-221ENST00000567935 TRIM27P14373 513 aa18.58■□□□□ 0.56
COMMD4-221ENST00000567935 USHBP1Q8N6Y0 703 aa18.58■□□□□ 0.56
COMMD4-221ENST00000567935 C8orf58Q8NAV2 365 aa18.58■□□□□ 0.56
COMMD4-221ENST00000567935 DDX54Q8TDD1 881 aaKnown RBP18.58■□□□□ 0.56
COMMD4-221ENST00000567935 CHMP4AQ9BY43 222 aa18.58■□□□□ 0.56
COMMD4-221ENST00000567935 TSPYL4Q9UJ04 414 aa18.58■□□□□ 0.56
COMMD4-221ENST00000567935 PRIM1P49642 420 aaKnown RBP18.57■□□□□ 0.56
COMMD4-221ENST00000567935 TSPYL6Q8N831 410 aa18.57■□□□□ 0.56
COMMD4-221ENST00000567935 API5Q9BZZ5 524 aaKnown RBP18.57■□□□□ 0.56
COMMD4-221ENST00000567935 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.57■□□□□ 0.56
COMMD4-221ENST00000567935 DOT1LQ8TEK3 1739 aa18.57■□□□□ 0.56
COMMD4-221ENST00000567935 RLBP1P12271 317 aa18.56■□□□□ 0.56
COMMD4-221ENST00000567935 TAF7Q15545 349 aaPredicted RBP18.56■□□□□ 0.56
COMMD4-221ENST00000567935 RBM46Q8TBY0 533 aaKnown RBP18.56■□□□□ 0.56
COMMD4-221ENST00000567935 TCERG1O14776 1098 aaKnown RBP18.55■□□□□ 0.56
COMMD4-221ENST00000567935 C1orf141Q5JVX7 400 aa18.55■□□□□ 0.56
COMMD4-221ENST00000567935 IL17REQ8NFR9 667 aa18.55■□□□□ 0.56
COMMD4-221ENST00000567935 CACNA1FO60840 1977 aa18.54■□□□□ 0.56
COMMD4-221ENST00000567935 ZNF530Q6P9A1 599 aaPredicted RBP18.54■□□□□ 0.56
COMMD4-221ENST00000567935 RAPGEF4Q8WZA2 1011 aa18.54■□□□□ 0.56
COMMD4-221ENST00000567935 PTPRCP08575 1304 aa18.52■□□□□ 0.56
COMMD4-221ENST00000567935 HSPA1AP0DMV8 641 aaKnown RBP18.52■□□□□ 0.56
COMMD4-221ENST00000567935 HSPA1BP0DMV9 641 aaKnown RBP18.52■□□□□ 0.56
COMMD4-221ENST00000567935 ADAMTS7Q9UKP4 1686 aa18.51■□□□□ 0.55
COMMD4-221ENST00000567935 ELL2O00472 640 aaPredicted RBP18.51■□□□□ 0.55
COMMD4-221ENST00000567935 TATP17735 454 aaPredicted RBP18.51■□□□□ 0.55
COMMD4-221ENST00000567935 SPG7Q9UQ90 795 aa18.51■□□□□ 0.55
COMMD4-221ENST00000567935 C5P01031 1676 aa18.5■□□□□ 0.55
COMMD4-221ENST00000567935 ABCC4O15439 1325 aa18.5■□□□□ 0.55
COMMD4-221ENST00000567935 HOXB7P09629 217 aa18.5■□□□□ 0.55
COMMD4-221ENST00000567935 ITPRIPQ8IWB1 547 aa18.5■□□□□ 0.55
COMMD4-221ENST00000567935 TEFQ10587 303 aa18.49■□□□□ 0.55
COMMD4-221ENST00000567935 FSTL1Q12841 308 aa18.49■□□□□ 0.55
COMMD4-221ENST00000567935 AMIGO3Q86WK7 504 aa18.49■□□□□ 0.55
COMMD4-221ENST00000567935 TMEM57Q8N5G2 664 aa18.49■□□□□ 0.55
COMMD4-221ENST00000567935 RWDD1Q9H446 243 aaPredicted RBP18.49■□□□□ 0.55
COMMD4-221ENST00000567935 TNNQ9UQP3 1299 aa18.49■□□□□ 0.55
COMMD4-221ENST00000567935 KDM3BQ7LBC6 1761 aa18.48■□□□□ 0.55
COMMD4-221ENST00000567935 C16orf71Q8IYS4 520 aaPredicted RBP18.48■□□□□ 0.55
COMMD4-221ENST00000567935 VIRMAQ69YN4 1812 aaKnown RBP18.47■□□□□ 0.55
COMMD4-221ENST00000567935 PKD1L3Q7Z443 1732 aa18.47■□□□□ 0.55
COMMD4-221ENST00000567935 RNMTO43148 476 aaKnown RBP18.47■□□□□ 0.55
COMMD4-221ENST00000567935 CCDC30Q5VVM6 783 aa18.47■□□□□ 0.55
COMMD4-221ENST00000567935 FLAD1Q8NFF5 587 aa18.47■□□□□ 0.55
COMMD4-221ENST00000567935 STK31Q9BXU1 1019 aa18.47■□□□□ 0.55
COMMD4-221ENST00000567935 TOGARAM1Q9Y4F4 1720 aa18.46■□□□□ 0.55
COMMD4-221ENST00000567935 HSP90AB1P08238 724 aaKnown RBP18.46■□□□□ 0.55
COMMD4-221ENST00000567935 SMIM5Q71RC9 77 aa18.46■□□□□ 0.55
COMMD4-221ENST00000567935 ZBTB40Q9NUA8 1239 aa18.46■□□□□ 0.55
COMMD4-221ENST00000567935 HDAC1Q13547 482 aaPredicted RBP18.45■□□□□ 0.54
COMMD4-221ENST00000567935 PXDNLA1KZ92 1463 aa18.45■□□□□ 0.54
COMMD4-221ENST00000567935 KRT24Q2M2I5 525 aa18.44■□□□□ 0.54
COMMD4-221ENST00000567935 INTS3Q68E01 1043 aaKnown RBP18.44■□□□□ 0.54
COMMD4-221ENST00000567935 IFNL2Q8IZJ0 200 aa18.44■□□□□ 0.54
COMMD4-221ENST00000567935 MIS18AQ9NYP9 233 aa18.44■□□□□ 0.54
COMMD4-221ENST00000567935 SIPA1L3O60292 1781 aaPredicted RBP18.44■□□□□ 0.54
COMMD4-221ENST00000567935 MEGF6O75095 1541 aa18.44■□□□□ 0.54
COMMD4-221ENST00000567935 KIAA1551Q9HCM1 1747 aa18.43■□□□□ 0.54
COMMD4-221ENST00000567935 SCN11AQ9UI33 1791 aa18.43■□□□□ 0.54
COMMD4-221ENST00000567935 BCS1LQ9Y276 419 aa18.43■□□□□ 0.54
COMMD4-221ENST00000567935 PCDHB15Q9Y5E8 787 aa18.43■□□□□ 0.54
COMMD4-221ENST00000567935 TAF1LQ8IZX4 1826 aa18.43■□□□□ 0.54
COMMD4-221ENST00000567935 KCPQ6ZWJ8 1503 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms