RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 GPT2Q8TD30 523 aa16.19■□□□□ 0.18
CLK3-206ENST00000562078 PXDNQ92626 1479 aa16.18■□□□□ 0.18
CLK3-206ENST00000562078 SLIT3O75094 1523 aa16.18■□□□□ 0.18
CLK3-206ENST00000562078 HOXC9P31274 260 aa16.18■□□□□ 0.18
CLK3-206ENST00000562078 MRPL50Q8N5N7 158 aaKnown RBP16.18■□□□□ 0.18
CLK3-206ENST00000562078 KIF24Q5T7B8 1368 aa16.17■□□□□ 0.18
CLK3-206ENST00000562078 KCNJ4P48050 445 aa16.17■□□□□ 0.18
CLK3-206ENST00000562078 BRPF1P55201 1214 aaPredicted RBP16.17■□□□□ 0.18
CLK3-206ENST00000562078 TNS3Q68CZ2 1445 aa16.17■□□□□ 0.18
CLK3-206ENST00000562078 PRPF40AO75400 957 aaKnown RBP16.17■□□□□ 0.18
CLK3-206ENST00000562078 PKP1Q13835 747 aa16.17■□□□□ 0.18
CLK3-206ENST00000562078 CHMP4AQ9BY43 222 aa16.17■□□□□ 0.18
CLK3-206ENST00000562078 KDRP35968 1356 aa16.16■□□□□ 0.18
CLK3-206ENST00000562078 GCP02774 474 aa16.16■□□□□ 0.18
CLK3-206ENST00000562078 LRSAM1Q6UWE0 723 aa16.16■□□□□ 0.18
CLK3-206ENST00000562078 RTL1A6NKG5 1358 aa16.16■□□□□ 0.18
CLK3-206ENST00000562078 IGSF1Q8N6C5 1336 aa16.16■□□□□ 0.18
CLK3-206ENST00000562078 NOLC1Q14978 699 aaKnown RBP eCLIP16.16■□□□□ 0.18
CLK3-206ENST00000562078 EYA1Q99502 592 aa16.16■□□□□ 0.18
CLK3-206ENST00000562078 TMEM63CQ9P1W3 806 aa16.16■□□□□ 0.18
CLK3-206ENST00000562078 LTV1Q96GA3 475 aaPredicted RBP16.15■□□□□ 0.18
CLK3-206ENST00000562078 ZBTB40Q9NUA8 1239 aa16.15■□□□□ 0.18
CLK3-206ENST00000562078 LTBP4Q8N2S1 1624 aa16.15■□□□□ 0.18
CLK3-206ENST00000562078 PHRF1Q9P1Y6 1649 aaKnown RBP16.15■□□□□ 0.18
CLK3-206ENST00000562078 PIBF1Q8WXW3 757 aa16.14■□□□□ 0.18
CLK3-206ENST00000562078 RGPD2P0DJD1 1756 aa16.14■□□□□ 0.18
CLK3-206ENST00000562078 KRT24Q2M2I5 525 aa16.14■□□□□ 0.17
CLK3-206ENST00000562078 CHAMP1Q96JM3 812 aa16.14■□□□□ 0.17
CLK3-206ENST00000562078 NSFL1CQ9UNZ2 370 aaKnown RBP16.14■□□□□ 0.17
CLK3-206ENST00000562078 MED1Q15648 1581 aaPredicted RBP16.14■□□□□ 0.17
CLK3-206ENST00000562078 LRRC37A3O60309 1634 aa16.14■□□□□ 0.17
CLK3-206ENST00000562078 SPATA31A3Q5VYP0 1347 aa16.13■□□□□ 0.17
CLK3-206ENST00000562078 HDAC1Q13547 482 aaPredicted RBP16.13■□□□□ 0.17
CLK3-206ENST00000562078 MTHFSDQ2M296 383 aaKnown RBP16.13■□□□□ 0.17
CLK3-206ENST00000562078 CRB1P82279 1406 aa16.13■□□□□ 0.17
CLK3-206ENST00000562078 NHSL1Q5SYE7 1610 aa16.13■□□□□ 0.17
CLK3-206ENST00000562078 IP6K1Q92551 441 aa16.12■□□□□ 0.17
CLK3-206ENST00000562078 ARHGAP45Q92619 1136 aa16.12■□□□□ 0.17
CLK3-206ENST00000562078 CHL1O00533 1208 aa16.12■□□□□ 0.17
CLK3-206ENST00000562078 ABCC4O15439 1325 aa16.12■□□□□ 0.17
CLK3-206ENST00000562078 ZFP91Q96JP5 570 aaPredicted RBP16.11■□□□□ 0.17
CLK3-206ENST00000562078 TTC12Q9H892 705 aaPredicted RBP16.11■□□□□ 0.17
CLK3-206ENST00000562078 RGPD5Q99666 1765 aa16.1■□□□□ 0.17
CLK3-206ENST00000562078 ARHGEF25Q86VW2 580 aa16.1■□□□□ 0.17
CLK3-206ENST00000562078 CERS3Q8IU89 383 aa16.1■□□□□ 0.17
CLK3-206ENST00000562078 CABLES1Q8TDN4 633 aa16.1■□□□□ 0.17
CLK3-206ENST00000562078 ANKRD7Q92527 254 aa16.1■□□□□ 0.17
CLK3-206ENST00000562078 CRYBG1Q9Y4K1 1723 aa16.1■□□□□ 0.17
CLK3-206ENST00000562078 ZC3H6P61129 1189 aaKnown RBP16.1■□□□□ 0.17
CLK3-206ENST00000562078 RTF1Q92541 710 aaKnown RBP16.1■□□□□ 0.17
CLK3-206ENST00000562078 ROBO1Q9Y6N7 1651 aa16.1■□□□□ 0.17
CLK3-206ENST00000562078 CYP2E1P05181 493 aaPredicted RBP16.09■□□□□ 0.17
CLK3-206ENST00000562078 FKBP5Q13451 457 aaPredicted RBP16.09■□□□□ 0.17
CLK3-206ENST00000562078 SOS2Q07890 1332 aaPredicted RBP16.09■□□□□ 0.17
CLK3-206ENST00000562078 KIAA0232Q92628 1395 aa16.09■□□□□ 0.17
CLK3-206ENST00000562078 MIS18AQ9NYP9 233 aa16.09■□□□□ 0.17
CLK3-206ENST00000562078 LNPKQ9C0E8 428 aa16.08■□□□□ 0.17
CLK3-206ENST00000562078 C1orf115Q9H7X2 142 aa16.08■□□□□ 0.17
CLK3-206ENST00000562078 RIOK3O14730 519 aaKnown RBP16.08■□□□□ 0.16
CLK3-206ENST00000562078 SLFN14P0C7P3 912 aa16.08■□□□□ 0.16
CLK3-206ENST00000562078 NUCB2P80303 420 aa16.08■□□□□ 0.16
CLK3-206ENST00000562078 OGFRQ9NZT2 677 aa16.08■□□□□ 0.16
CLK3-206ENST00000562078 FAM208AQ9UK61 1670 aaKnown RBP16.07■□□□□ 0.16
CLK3-206ENST00000562078 ZBTB7BO15156 539 aaPredicted RBP16.07■□□□□ 0.16
CLK3-206ENST00000562078 FEZ1Q99689 392 aa16.07■□□□□ 0.16
CLK3-206ENST00000562078 API5Q9BZZ5 524 aaKnown RBP16.07■□□□□ 0.16
CLK3-206ENST00000562078 CACNA1FO60840 1977 aa16.06■□□□□ 0.16
CLK3-206ENST00000562078 USHBP1Q8N6Y0 703 aa16.06■□□□□ 0.16
CLK3-206ENST00000562078 DNAJC2Q99543 621 aaKnown RBP16.06■□□□□ 0.16
CLK3-206ENST00000562078 TSPYL4Q9UJ04 414 aa16.06■□□□□ 0.16
CLK3-206ENST00000562078 HAP1P54257 671 aaPredicted RBP16.06■□□□□ 0.16
CLK3-206ENST00000562078 SPTLC3Q9NUV7 552 aa16.06■□□□□ 0.16
CLK3-206ENST00000562078 RGS12O14924 1447 aa16.05■□□□□ 0.16
CLK3-206ENST00000562078 GABPB1Q06547 395 aaPredicted RBP16.05■□□□□ 0.16
CLK3-206ENST00000562078 IRX3P78415 501 aaPredicted RBP16.05■□□□□ 0.16
CLK3-206ENST00000562078 SLC20A2Q08357 652 aa16.05■□□□□ 0.16
CLK3-206ENST00000562078 CAPN2P17655 700 aa16.04■□□□□ 0.16
CLK3-206ENST00000562078 ANKRD24Q8TF21 1146 aa16.04■□□□□ 0.16
CLK3-206ENST00000562078 TSPY26PQ9H489 355 aa16.04■□□□□ 0.16
CLK3-206ENST00000562078 ABCA3Q99758 1704 aa16.04■□□□□ 0.16
CLK3-206ENST00000562078 TBC1D9Q6ZT07 1266 aa16.04■□□□□ 0.16
CLK3-206ENST00000562078 ZDHHC9Q9Y397 364 aa16.04■□□□□ 0.16
CLK3-206ENST00000562078 MAP3K5Q99683 1374 aa16.04■□□□□ 0.16
CLK3-206ENST00000562078 GNAT3A8MTJ3 354 aa16.03■□□□□ 0.16
CLK3-206ENST00000562078 BRD2P25440 801 aaKnown RBP16.03■□□□□ 0.16
CLK3-206ENST00000562078 ZGPATQ8N5A5 531 aaKnown RBP16.03■□□□□ 0.16
CLK3-206ENST00000562078 LRRC59Q96AG4 307 aaKnown RBP16.03■□□□□ 0.16
CLK3-206ENST00000562078 TIGD1Q96MW7 591 aa16.03■□□□□ 0.16
CLK3-206ENST00000562078 AXIN2Q9Y2T1 843 aa16.03■□□□□ 0.16
CLK3-206ENST00000562078 FOXD4L5Q5VV16 416 aaPredicted RBP16.03■□□□□ 0.16
CLK3-206ENST00000562078 NBPF6Q5VWK0 638 aa16.03■□□□□ 0.16
CLK3-206ENST00000562078 FOXD4L4Q8WXT5 416 aaPredicted RBP16.03■□□□□ 0.16
CLK3-206ENST00000562078 NBPF4Q96M43 638 aa16.03■□□□□ 0.16
CLK3-206ENST00000562078 USP25Q9UHP3 1055 aa16.03■□□□□ 0.16
CLK3-206ENST00000562078 CTIFO43310 598 aaKnown RBP16.02■□□□□ 0.16
CLK3-206ENST00000562078 NUCB1Q02818 461 aa16.02■□□□□ 0.16
CLK3-206ENST00000562078 CHRNA2Q15822 529 aa16.02■□□□□ 0.16
CLK3-206ENST00000562078 COL18A1P39060 1754 aa16.02■□□□□ 0.15
CLK3-206ENST00000562078 CCDC66A2RUB6 948 aa16.02■□□□□ 0.15
CLK3-206ENST00000562078 BMP2KLQ5H9B9 411 aa16.02■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms