RNA–Protein interactions for RNA: ENST00000560861.1

SNX1-212, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-212ENST00000560861 EP400Q96L91 3159 aa14.4□□□□□ -0.1
SNX1-212ENST00000560861 AAMPQ13685 434 aa14.4□□□□□ -0.1
SNX1-212ENST00000560861 PDIA6Q15084 440 aa14.4□□□□□ -0.1
SNX1-212ENST00000560861 B4GALNT3Q6L9W6 998 aa14.4□□□□□ -0.1
SNX1-212ENST00000560861 TTC5Q8N0Z6 440 aa14.4□□□□□ -0.1
SNX1-212ENST00000560861 STK31Q9BXU1 1019 aa14.4□□□□□ -0.1
SNX1-212ENST00000560861 NHSQ6T4R5 1651 aa14.39□□□□□ -0.11
SNX1-212ENST00000560861 PXDNLA1KZ92 1463 aa14.39□□□□□ -0.11
SNX1-212ENST00000560861 SBF2Q86WG5 1849 aa14.39□□□□□ -0.11
SNX1-212ENST00000560861 SNRPA1P09661 255 aaKnown RBP14.39□□□□□ -0.11
SNX1-212ENST00000560861 FTSJ3Q8IY81 847 aaKnown RBP14.39□□□□□ -0.11
SNX1-212ENST00000560861 ATG3Q9NT62 314 aa14.39□□□□□ -0.11
SNX1-212ENST00000560861 CHPF2Q9P2E5 772 aa14.39□□□□□ -0.11
SNX1-212ENST00000560861 FLIIQ13045 1269 aa14.38□□□□□ -0.11
SNX1-212ENST00000560861 INTS3Q68E01 1043 aaKnown RBP14.38□□□□□ -0.11
SNX1-212ENST00000560861 LRP10Q7Z4F1 713 aa14.38□□□□□ -0.11
SNX1-212ENST00000560861 CNKSR2Q8WXI2 1034 aa14.38□□□□□ -0.11
SNX1-212ENST00000560861 NECTIN2Q92692 538 aa14.38□□□□□ -0.11
SNX1-212ENST00000560861 ZNF831Q5JPB2 1677 aa14.38□□□□□ -0.11
SNX1-212ENST00000560861 BRWD3Q6RI45 1802 aa14.38□□□□□ -0.11
SNX1-212ENST00000560861 EIF2S2P20042 333 aaKnown RBP14.37□□□□□ -0.11
SNX1-212ENST00000560861 PROSER3Q2NL68 480 aa14.37□□□□□ -0.11
SNX1-212ENST00000560861 PHAXQ9H814 394 aaKnown RBP14.37□□□□□ -0.11
SNX1-212ENST00000560861 DDX21Q9NR30 783 aaKnown RBP eCLIP14.37□□□□□ -0.11
SNX1-212ENST00000560861 DBF4Q9UBU7 674 aaPredicted RBP14.37□□□□□ -0.11
SNX1-212ENST00000560861 ASAP1Q9ULH1 1129 aa14.37□□□□□ -0.11
SNX1-212ENST00000560861 DDX19BQ9UMR2 479 aa14.37□□□□□ -0.11
SNX1-212ENST00000560861 USP16Q9Y5T5 823 aa14.37□□□□□ -0.11
SNX1-212ENST00000560861 ERBB4Q15303 1308 aa14.37□□□□□ -0.11
SNX1-212ENST00000560861 RREB1Q92766 1687 aa14.36□□□□□ -0.11
SNX1-212ENST00000560861 PRIM1P49642 420 aaKnown RBP14.36□□□□□ -0.11
SNX1-212ENST00000560861 KDM2BQ8NHM5 1336 aa14.36□□□□□ -0.11
SNX1-212ENST00000560861 ZBTB7BO15156 539 aaPredicted RBP14.35□□□□□ -0.11
SNX1-212ENST00000560861 ANXA1P04083 346 aa14.35□□□□□ -0.11
SNX1-212ENST00000560861 RXRBP28702 533 aa14.35□□□□□ -0.11
SNX1-212ENST00000560861 VSIG10Q8N0Z9 540 aa14.35□□□□□ -0.11
SNX1-212ENST00000560861 CCDC136Q96JN2 1154 aa14.35□□□□□ -0.11
SNX1-212ENST00000560861 SLC4A9Q96Q91 983 aa14.35□□□□□ -0.11
SNX1-212ENST00000560861 QTRT2Q9H974 415 aaKnown RBP14.35□□□□□ -0.11
SNX1-212ENST00000560861 ZBTB40Q9NUA8 1239 aa14.35□□□□□ -0.11
SNX1-212ENST00000560861 BTAF1O14981 1849 aa14.35□□□□□ -0.11
SNX1-212ENST00000560861 ADCY9O60503 1353 aa14.34□□□□□ -0.11
SNX1-212ENST00000560861 ITPRIPQ8IWB1 547 aa14.34□□□□□ -0.11
SNX1-212ENST00000560861 HYPKQ9NX55 129 aa14.34□□□□□ -0.11
SNX1-212ENST00000560861 PCDHB15Q9Y5E8 787 aa14.34□□□□□ -0.11
SNX1-212ENST00000560861 ATP10DQ9P241 1426 aa14.33□□□□□ -0.11
SNX1-212ENST00000560861 NUP188Q5SRE5 1749 aa14.33□□□□□ -0.12
SNX1-212ENST00000560861 NBPF26B4DH59 902 aa14.33□□□□□ -0.12
SNX1-212ENST00000560861 F6X3S4 739 aa14.33□□□□□ -0.12
SNX1-212ENST00000560861 HOXD11P31277 338 aaPredicted RBP14.33□□□□□ -0.12
SNX1-212ENST00000560861 NBPF14Q5TI25 921 aa14.33□□□□□ -0.12
SNX1-212ENST00000560861 NBPF10Q6P3W6 841 aaKnown RBP14.33□□□□□ -0.12
SNX1-212ENST00000560861 SEPT12Q8IYM1 358 aa14.33□□□□□ -0.12
SNX1-212ENST00000560861 NBPF15Q8N660 670 aa14.33□□□□□ -0.12
SNX1-212ENST00000560861 COL5A3P25940 1745 aaPredicted RBP14.32□□□□□ -0.12
SNX1-212ENST00000560861 ARFGEF2Q9Y6D5 1785 aa14.32□□□□□ -0.12
SNX1-212ENST00000560861 PTCD1O75127 700 aaKnown RBP14.32□□□□□ -0.12
SNX1-212ENST00000560861 FKBP5Q13451 457 aaPredicted RBP14.32□□□□□ -0.12
SNX1-212ENST00000560861 UPF1Q92900 1129 aaKnown RBP eCLIP14.32□□□□□ -0.122e-7■■■■■ 31.4
SNX1-212ENST00000560861 ACSBG1Q96GR2 724 aa14.32□□□□□ -0.12
SNX1-212ENST00000560861 IBTKQ9P2D0 1353 aaPredicted RBP14.32□□□□□ -0.12
SNX1-212ENST00000560861 KCNQ2O43526 872 aa14.31□□□□□ -0.12
SNX1-212ENST00000560861 CCT4P50991 539 aaKnown RBP14.31□□□□□ -0.12
SNX1-212ENST00000560861 DNAJC10Q8IXB1 793 aa14.31□□□□□ -0.12
SNX1-212ENST00000560861 LY75O60449 1722 aa14.31□□□□□ -0.12
SNX1-212ENST00000560861 TEX13AQ9BXU3 409 aaPredicted RBP14.3□□□□□ -0.12
SNX1-212ENST00000560861 MYH14Q7Z406 1995 aaKnown RBP14.29□□□□□ -0.12
SNX1-212ENST00000560861 BEND3Q5T5X7 828 aa14.29□□□□□ -0.12
SNX1-212ENST00000560861 KSR2Q6VAB6 950 aa14.29□□□□□ -0.12
SNX1-212ENST00000560861 PTF1AQ7RTS3 328 aa14.29□□□□□ -0.12
SNX1-212ENST00000560861 DNAAF4Q8WXU2 420 aa14.29□□□□□ -0.12
SNX1-212ENST00000560861 SYTL4Q96C24 671 aaPredicted RBP14.29□□□□□ -0.12
SNX1-212ENST00000560861 CHMP4BQ9H444 224 aaKnown RBP14.29□□□□□ -0.12
SNX1-212ENST00000560861 PALLDQ8WX93 1383 aa14.29□□□□□ -0.12
SNX1-212ENST00000560861 PI4KAP2A4QPH2 592 aa14.28□□□□□ -0.12
SNX1-212ENST00000560861 DCAF8L1A6NGE4 600 aa14.28□□□□□ -0.12
SNX1-212ENST00000560861 IGHDP01880 384 aa14.28□□□□□ -0.12
SNX1-212ENST00000560861 A1BGP04217 495 aa14.28□□□□□ -0.12
SNX1-212ENST00000560861 CYP19A1P11511 503 aaPredicted RBP14.28□□□□□ -0.12
SNX1-212ENST00000560861 RBM6P78332 1123 aaKnown RBP14.28□□□□□ -0.12
SNX1-212ENST00000560861 PI4KAP1Q8N8J0 262 aa14.28□□□□□ -0.12
SNX1-212ENST00000560861 XAGE3Q8WTP9 111 aa14.28□□□□□ -0.12
SNX1-212ENST00000560861 SMARCC1Q92922 1105 aaPredicted RBP14.28□□□□□ -0.12
SNX1-212ENST00000560861 A0A0G2JS52 829 aa14.27□□□□□ -0.13
SNX1-212ENST00000560861 PIP4K2AP48426 406 aaPredicted RBP14.27□□□□□ -0.13
SNX1-212ENST00000560861 MYT1Q01538 1121 aa14.27□□□□□ -0.13
SNX1-212ENST00000560861 CENPQQ7L2Z9 268 aaPredicted RBP14.27□□□□□ -0.13
SNX1-212ENST00000560861 COPS6Q7L5N1 327 aa14.27□□□□□ -0.13
SNX1-212ENST00000560861 MEIS3Q99687 375 aa14.27□□□□□ -0.13
SNX1-212ENST00000560861 RBM42Q9BTD8 480 aaKnown RBP14.27□□□□□ -0.13
SNX1-212ENST00000560861 MYL6BP14649 208 aa14.26□□□□□ -0.13
SNX1-212ENST00000560861 HDAC1Q13547 482 aaPredicted RBP14.26□□□□□ -0.13
SNX1-212ENST00000560861 SLC4A10Q6U841 1118 aa14.26□□□□□ -0.13
SNX1-212ENST00000560861 MAP3K2Q9Y2U5 619 aa14.26□□□□□ -0.13
SNX1-212ENST00000560861 TAF1LQ8IZX4 1826 aa14.26□□□□□ -0.13
SNX1-212ENST00000560861 AFDNP55196 1824 aaKnown RBP14.25□□□□□ -0.13
SNX1-212ENST00000560861 LOC102724428A0A0B4J2F2 783 aa14.25□□□□□ -0.13
SNX1-212ENST00000560861 ALDH1L1O75891 902 aa14.25□□□□□ -0.13
SNX1-212ENST00000560861 DDX58O95786 925 aaKnown RBP14.25□□□□□ -0.13
SNX1-212ENST00000560861 SIK1P57059 783 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms