RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 TJP1Q07157 1748 aa15.6■□□□□ 0.09
LDLR-212ENST00000560467 KCPQ6ZWJ8 1503 aa15.6■□□□□ 0.09
LDLR-212ENST00000560467 HTRA3P83110 453 aa15.6■□□□□ 0.09
LDLR-212ENST00000560467 FAM9BQ8IZU0 186 aa15.6■□□□□ 0.09
LDLR-212ENST00000560467 RBM46Q8TBY0 533 aaKnown RBP15.6■□□□□ 0.09
LDLR-212ENST00000560467 NUDCQ9Y266 331 aa15.6■□□□□ 0.09
LDLR-212ENST00000560467 SOS1Q07889 1333 aaPredicted RBP15.6■□□□□ 0.09
LDLR-212ENST00000560467 TM4SF1P30408 202 aa15.59■□□□□ 0.09
LDLR-212ENST00000560467 SLC39A6Q13433 755 aa15.59■□□□□ 0.09
LDLR-212ENST00000560467 USPL1Q5W0Q7 1092 aa15.59■□□□□ 0.09
LDLR-212ENST00000560467 LGR6Q9HBX8 967 aa15.59■□□□□ 0.09
LDLR-212ENST00000560467 ZPR1O75312 459 aa15.58■□□□□ 0.08
LDLR-212ENST00000560467 AKAP4Q5JQC9 854 aa15.58■□□□□ 0.08
LDLR-212ENST00000560467 C16orf71Q8IYS4 520 aaPredicted RBP15.58■□□□□ 0.08
LDLR-212ENST00000560467 SLC52A2Q9HAB3 445 aa15.58■□□□□ 0.08
LDLR-212ENST00000560467 BRCA1P38398 1863 aaKnown RBP15.57■□□□□ 0.08
LDLR-212ENST00000560467 CYP19A1P11511 503 aaPredicted RBP15.57■□□□□ 0.08
LDLR-212ENST00000560467 RASSF7Q02833 373 aa15.57■□□□□ 0.08
LDLR-212ENST00000560467 RNMTO43148 476 aaKnown RBP15.56■□□□□ 0.08
LDLR-212ENST00000560467 HMOX1P09601 288 aa15.56■□□□□ 0.08
LDLR-212ENST00000560467 NFIXQ14938 502 aa15.56■□□□□ 0.08
LDLR-212ENST00000560467 YTHDC1Q96MU7 727 aaKnown RBP15.56■□□□□ 0.08
LDLR-212ENST00000560467 RRAGCQ9HB90 399 aa15.56■□□□□ 0.08
LDLR-212ENST00000560467 ZBTB1Q9Y2K1 713 aa15.56■□□□□ 0.08
LDLR-212ENST00000560467 KDM2BQ8NHM5 1336 aa15.56■□□□□ 0.08
LDLR-212ENST00000560467 MRC1P22897 1456 aa15.56■□□□□ 0.08
LDLR-212ENST00000560467 ADAMTS7Q9UKP4 1686 aa15.56■□□□□ 0.08
LDLR-212ENST00000560467 COL15A1P39059 1388 aa15.55■□□□□ 0.08
LDLR-212ENST00000560467 PNISRQ8TF01 805 aaKnown RBP15.55■□□□□ 0.08
LDLR-212ENST00000560467 PNNQ9H307 717 aaKnown RBP15.55■□□□□ 0.08
LDLR-212ENST00000560467 BCL2L12Q9HB09 334 aa15.55■□□□□ 0.08
LDLR-212ENST00000560467 FSTL1Q12841 308 aa15.54■□□□□ 0.08
LDLR-212ENST00000560467 NARFQ9UHQ1 456 aa15.54■□□□□ 0.08
LDLR-212ENST00000560467 ARFGEF1Q9Y6D6 1849 aa15.53■□□□□ 0.08
LDLR-212ENST00000560467 DIAPH1O60610 1272 aaKnown RBP15.53■□□□□ 0.08
LDLR-212ENST00000560467 NEFMP07197 916 aa15.53■□□□□ 0.08
LDLR-212ENST00000560467 PRELPP51888 382 aa15.53■□□□□ 0.08
LDLR-212ENST00000560467 MTHFSDQ2M296 383 aaKnown RBP15.53■□□□□ 0.08
LDLR-212ENST00000560467 KLRG1Q96E93 195 aa15.53■□□□□ 0.08
LDLR-212ENST00000560467 CARMIL3Q8ND23 1372 aa15.52■□□□□ 0.08
LDLR-212ENST00000560467 CCDC184Q52MB2 194 aa15.52■□□□□ 0.08
LDLR-212ENST00000560467 SERPINB2P05120 415 aa15.51■□□□□ 0.07
LDLR-212ENST00000560467 CANXP27824 592 aaKnown RBP15.51■□□□□ 0.07
LDLR-212ENST00000560467 SCN11AQ9UI33 1791 aa15.51■□□□□ 0.07
LDLR-212ENST00000560467 WDR90Q96KV7 1748 aa15.51■□□□□ 0.07
LDLR-212ENST00000560467 BICDL1Q6ZP65 573 aa15.5■□□□□ 0.07
LDLR-212ENST00000560467 C2CD5Q86YS7 1000 aa15.5■□□□□ 0.07
LDLR-212ENST00000560467 U2SURPO15042 1029 aaKnown RBP15.49■□□□□ 0.07
LDLR-212ENST00000560467 CENPBP07199 599 aaPredicted RBP15.49■□□□□ 0.07
LDLR-212ENST00000560467 U2AF1L5P0DN76 240 aaPredicted RBP15.49■□□□□ 0.07
LDLR-212ENST00000560467 LMNB1P20700 586 aa15.49■□□□□ 0.07
LDLR-212ENST00000560467 U2AF1Q01081 240 aaKnown RBP eCLIP15.49■□□□□ 0.07
LDLR-212ENST00000560467 TTLL6Q8N841 843 aa15.49■□□□□ 0.07
LDLR-212ENST00000560467 JMYQ8N9B5 988 aa15.49■□□□□ 0.07
LDLR-212ENST00000560467 SMC1BQ8NDV3 1235 aa15.49■□□□□ 0.07
LDLR-212ENST00000560467 ZC3H4Q9UPT8 1303 aaKnown RBP15.48■□□□□ 0.07
LDLR-212ENST00000560467 NFKBIEO00221 500 aa15.48■□□□□ 0.07
LDLR-212ENST00000560467 VSIG10Q8N0Z9 540 aa15.48■□□□□ 0.07
LDLR-212ENST00000560467 EIF5P55010 431 aaKnown RBP15.47■□□□□ 0.07
LDLR-212ENST00000560467 HNRNPUQ00839 825 aaKnown RBP eCLIP15.47■□□□□ 0.07
LDLR-212ENST00000560467 COL13A1Q5TAT6 717 aaPredicted RBP15.47■□□□□ 0.07
LDLR-212ENST00000560467 NRXN2Q9P2S2 1712 aa15.46■□□□□ 0.07
LDLR-212ENST00000560467 GLTPD2A6NH11 291 aa15.46■□□□□ 0.07
LDLR-212ENST00000560467 H0YIN7 160 aa15.46■□□□□ 0.07
LDLR-212ENST00000560467 TBC1D9BQ66K14 1250 aa15.46■□□□□ 0.07
LDLR-212ENST00000560467 TTC5Q8N0Z6 440 aa15.46■□□□□ 0.07
LDLR-212ENST00000560467 CCDC24Q8N4L8 307 aa15.46■□□□□ 0.07
LDLR-212ENST00000560467 ZNF496Q96IT1 587 aaPredicted RBP15.46■□□□□ 0.07
LDLR-212ENST00000560467 ADAMTS8Q9UP79 889 aa15.46■□□□□ 0.07
LDLR-212ENST00000560467 TNRC6CQ9HCJ0 1690 aaKnown RBP15.45■□□□□ 0.06
LDLR-212ENST00000560467 STARD3NLO95772 234 aa15.45■□□□□ 0.06
LDLR-212ENST00000560467 VEGFAP15692 232 aaPredicted RBP15.45■□□□□ 0.06
LDLR-212ENST00000560467 ZNF219Q9P2Y4 722 aaPredicted RBP15.45■□□□□ 0.06
LDLR-212ENST00000560467 ZNF330Q9Y3S2 320 aaPredicted RBP15.45■□□□□ 0.06
LDLR-212ENST00000560467 A0A087WZG4 1122 aa15.44■□□□□ 0.06
LDLR-212ENST00000560467 IL17REQ8NFR9 667 aa15.44■□□□□ 0.06
LDLR-212ENST00000560467 COL3A1P02461 1466 aaPredicted RBP15.44■□□□□ 0.06
LDLR-212ENST00000560467 AFDNP55196 1824 aaKnown RBP15.43■□□□□ 0.06
LDLR-212ENST00000560467 PRR5LQ6MZQ0 368 aa15.43■□□□□ 0.06
LDLR-212ENST00000560467 NGEFQ8N5V2 710 aa15.43■□□□□ 0.06
LDLR-212ENST00000560467 ZNF622Q969S3 477 aaKnown RBP eCLIP15.43■□□□□ 0.066e-11■■□□□ 11.6
LDLR-212ENST00000560467 TBC1D2BQ9UPU7 963 aa15.43■□□□□ 0.06
LDLR-212ENST00000560467 HEG1Q9ULI3 1381 aa15.43■□□□□ 0.06
LDLR-212ENST00000560467 MAPK8IP3Q9UPT6 1336 aa15.43■□□□□ 0.06
LDLR-212ENST00000560467 SBF1O95248 1867 aa15.42■□□□□ 0.06
LDLR-212ENST00000560467 POTECB2RU33 542 aa15.42■□□□□ 0.06
LDLR-212ENST00000560467 C21orf2O43822 256 aa15.42■□□□□ 0.06
LDLR-212ENST00000560467 TEFQ10587 303 aa15.42■□□□□ 0.06
LDLR-212ENST00000560467 ZNF790Q6PG37 636 aa15.42■□□□□ 0.06
LDLR-212ENST00000560467 CAPN15O75808 1086 aa15.41■□□□□ 0.06
LDLR-212ENST00000560467 A1BGP04217 495 aa15.41■□□□□ 0.06
LDLR-212ENST00000560467 RUNDC1Q96C34 613 aa15.41■□□□□ 0.06
LDLR-212ENST00000560467 BRIP1Q9BX63 1249 aa15.41■□□□□ 0.06
LDLR-212ENST00000560467 UBR2Q8IWV8 1755 aa15.41■□□□□ 0.06
LDLR-212ENST00000560467 DLEC1Q9Y238 1755 aa15.4■□□□□ 0.06
LDLR-212ENST00000560467 GNAT3A8MTJ3 354 aa15.4■□□□□ 0.06
LDLR-212ENST00000560467 KCNQ3O43525 872 aa15.4■□□□□ 0.06
LDLR-212ENST00000560467 CAMTA2O94983 1202 aa15.4■□□□□ 0.06
LDLR-212ENST00000560467 GAS2L2Q8NHY3 880 aa15.4■□□□□ 0.06
LDLR-212ENST00000560467 PCNTO95613 3336 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms