RNA–Protein interactions for RNA: ENST00000559989.1

CSPG4P12-202, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 12, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P12, Length 7,790 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P12-202ENST00000559989 TBC1D5Q92609 795 aa15.95■□□□□ 0.14
CSPG4P12-202ENST00000559989 GAS2L2Q8NHY3 880 aa15.94■□□□□ 0.14
CSPG4P12-202ENST00000559989 JAKMIP1Q96N16 626 aaKnown RBP15.94■□□□□ 0.14
CSPG4P12-202ENST00000559989 SNW1Q13573 536 aaKnown RBP15.94■□□□□ 0.14
CSPG4P12-202ENST00000559989 TMX1Q9H3N1 280 aa15.94■□□□□ 0.14
CSPG4P12-202ENST00000559989 SNX16P57768 344 aa15.94■□□□□ 0.14
CSPG4P12-202ENST00000559989 OTUD6BQ8N6M0 293 aa15.94■□□□□ 0.14
CSPG4P12-202ENST00000559989 AMPD3Q01432 767 aa15.94■□□□□ 0.14
CSPG4P12-202ENST00000559989 FKBP4Q02790 459 aaKnown RBP eCLIP15.94■□□□□ 0.14
CSPG4P12-202ENST00000559989 CCDC77Q9BR77 488 aa15.94■□□□□ 0.14
CSPG4P12-202ENST00000559989 WDHD1O75717 1129 aaPredicted RBP15.94■□□□□ 0.14
CSPG4P12-202ENST00000559989 CCDC129Q6ZRS4 1044 aa15.94■□□□□ 0.14
CSPG4P12-202ENST00000559989 CCDC144CPQ8IYA2 1237 aa15.94■□□□□ 0.14
CSPG4P12-202ENST00000559989 PLEKHH1Q9ULM0 1364 aa15.94■□□□□ 0.14
CSPG4P12-202ENST00000559989 CASQ2O14958 399 aaPredicted RBP15.93■□□□□ 0.14
CSPG4P12-202ENST00000559989 BAZ1AQ9NRL2 1556 aaPredicted RBP15.93■□□□□ 0.14
CSPG4P12-202ENST00000559989 CCDC14Q49A88 953 aa15.93■□□□□ 0.14
CSPG4P12-202ENST00000559989 PDZRN3Q9UPQ7 1066 aa15.93■□□□□ 0.14
CSPG4P12-202ENST00000559989 CEP57Q86XR8 500 aa15.93■□□□□ 0.14
CSPG4P12-202ENST00000559989 MTIF2P46199 727 aaKnown RBP15.93■□□□□ 0.14
CSPG4P12-202ENST00000559989 DNAJC21Q5F1R6 531 aaKnown RBP15.93■□□□□ 0.14
CSPG4P12-202ENST00000559989 MICALL1Q8N3F8 863 aa15.93■□□□□ 0.14
CSPG4P12-202ENST00000559989 ZHX1Q9UKY1 873 aaPredicted RBP15.93■□□□□ 0.14
CSPG4P12-202ENST00000559989 CIB2O75838 187 aa15.92■□□□□ 0.14
CSPG4P12-202ENST00000559989 PYM1Q9BRP8 204 aaKnown RBP15.92■□□□□ 0.14
CSPG4P12-202ENST00000559989 A0A087WZG4 1122 aa15.92■□□□□ 0.14
CSPG4P12-202ENST00000559989 ZFP91Q96JP5 570 aaPredicted RBP15.92■□□□□ 0.14
CSPG4P12-202ENST00000559989 CCDC196A0A1B0GTZ2 297 aa15.92■□□□□ 0.14
CSPG4P12-202ENST00000559989 EPSTI1Q96J88 318 aa15.92■□□□□ 0.14
CSPG4P12-202ENST00000559989 GOLIM4O00461 696 aa15.92■□□□□ 0.14
CSPG4P12-202ENST00000559989 PRC1O43663 620 aa15.92■□□□□ 0.14
CSPG4P12-202ENST00000559989 ATF3P18847 181 aa15.92■□□□□ 0.14
CSPG4P12-202ENST00000559989 ALDH3A1P30838 453 aa15.92■□□□□ 0.14
CSPG4P12-202ENST00000559989 PRPHP41219 470 aa15.92■□□□□ 0.14
CSPG4P12-202ENST00000559989 TCHPQ9BT92 498 aa15.92■□□□□ 0.14
CSPG4P12-202ENST00000559989 BAG4O95429 457 aaKnown RBP15.92■□□□□ 0.14
CSPG4P12-202ENST00000559989 STMN1P16949 149 aa15.92■□□□□ 0.14
CSPG4P12-202ENST00000559989 KRT222Q8N1A0 295 aa15.92■□□□□ 0.14
CSPG4P12-202ENST00000559989 TTC16Q8NEE8 873 aa15.92■□□□□ 0.14
CSPG4P12-202ENST00000559989 KIAA1524Q8TCG1 905 aa15.92■□□□□ 0.14
CSPG4P12-202ENST00000559989 CUX2O14529 1486 aa15.92■□□□□ 0.14
CSPG4P12-202ENST00000559989 HMGB1P09429 215 aaKnown RBP15.92■□□□□ 0.14
CSPG4P12-202ENST00000559989 ATP11AP98196 1134 aa15.92■□□□□ 0.14
CSPG4P12-202ENST00000559989 RABGAP1Q9Y3P9 1069 aa15.92■□□□□ 0.14
CSPG4P12-202ENST00000559989 CNTLNQ9NXG0 1405 aa15.91■□□□□ 0.14
CSPG4P12-202ENST00000559989 HNRNPMP52272 730 aaKnown RBP eCLIP15.91■□□□□ 0.14
CSPG4P12-202ENST00000559989 STMN2Q93045 179 aa15.91■□□□□ 0.14
CSPG4P12-202ENST00000559989 C16orf45Q96MC5 204 aaPredicted RBP15.91■□□□□ 0.14
CSPG4P12-202ENST00000559989 TRMT1Q9NXH9 659 aaKnown RBP15.91■□□□□ 0.14
CSPG4P12-202ENST00000559989 ATP2A1O14983 1001 aa15.91■□□□□ 0.14
CSPG4P12-202ENST00000559989 ERCC6LQ2NKX8 1250 aa15.91■□□□□ 0.14
CSPG4P12-202ENST00000559989 ZNF354CQ86Y25 554 aa15.91■□□□□ 0.14
CSPG4P12-202ENST00000559989 VCX3BQ9H321 246 aa15.91■□□□□ 0.14
CSPG4P12-202ENST00000559989 LUC7L2Q9Y383 392 aaKnown RBP15.91■□□□□ 0.14
CSPG4P12-202ENST00000559989 RFC1P35251 1148 aaPredicted RBP15.91■□□□□ 0.14
CSPG4P12-202ENST00000559989 RSPH14Q9UHP6 348 aa15.91■□□□□ 0.14
CSPG4P12-202ENST00000559989 PUF60Q9UHX1 559 aaKnown RBP15.91■□□□□ 0.14
CSPG4P12-202ENST00000559989 CASTP20810 708 aaKnown RBP15.9■□□□□ 0.14
CSPG4P12-202ENST00000559989 TMOD2Q9NZR1 351 aa15.9■□□□□ 0.14
CSPG4P12-202ENST00000559989 MCM4P33991 863 aa15.9■□□□□ 0.14
CSPG4P12-202ENST00000559989 DZIP1Q86YF9 867 aaKnown RBP15.9■□□□□ 0.14
CSPG4P12-202ENST00000559989 LACTBP83111 547 aaPredicted RBP15.9■□□□□ 0.14
CSPG4P12-202ENST00000559989 GBP6Q6ZN66 633 aa15.9■□□□□ 0.14
CSPG4P12-202ENST00000559989 ZNF853P0CG23 659 aa15.9■□□□□ 0.14
CSPG4P12-202ENST00000559989 SF3B2Q13435 895 aaKnown RBP15.9■□□□□ 0.14
CSPG4P12-202ENST00000559989 CFAP157Q5JU67 520 aa15.9■□□□□ 0.14
CSPG4P12-202ENST00000559989 CNNM3Q8NE01 707 aa15.9■□□□□ 0.14
CSPG4P12-202ENST00000559989 CALML4Q96GE6 196 aa15.9■□□□□ 0.14
CSPG4P12-202ENST00000559989 SYNCQ9H7C4 482 aa15.9■□□□□ 0.14
CSPG4P12-202ENST00000559989 USH1CQ9Y6N9 552 aa15.9■□□□□ 0.14
CSPG4P12-202ENST00000559989 PLEKHO1Q53GL0 409 aaPredicted RBP15.9■□□□□ 0.14
CSPG4P12-202ENST00000559989 PPFIBP2Q8ND30 876 aa15.89■□□□□ 0.13
CSPG4P12-202ENST00000559989 GBP1P32455 592 aa15.89■□□□□ 0.13
CSPG4P12-202ENST00000559989 TRIM7Q9C029 511 aa15.89■□□□□ 0.13
CSPG4P12-202ENST00000559989 ARFGAP3Q9NP61 516 aa15.89■□□□□ 0.13
CSPG4P12-202ENST00000559989 PPP1R1BQ9UD71 204 aaPredicted RBP15.89■□□□□ 0.13
CSPG4P12-202ENST00000559989 NAA25Q14CX7 972 aa15.89■□□□□ 0.13
CSPG4P12-202ENST00000559989 STX1AQ16623 288 aa15.89■□□□□ 0.13
CSPG4P12-202ENST00000559989 CACNA2D3Q8IZS8 1091 aa15.89■□□□□ 0.13
CSPG4P12-202ENST00000559989 SCAND2PQ9GZW5 306 aaPredicted RBP15.89■□□□□ 0.13
CSPG4P12-202ENST00000559989 U3KPZ7 1027 aaPredicted RBP15.89■□□□□ 0.13
CSPG4P12-202ENST00000559989 MCM5P33992 734 aa15.89■□□□□ 0.13
CSPG4P12-202ENST00000559989 CHMP4BP1P59074 171 aa15.89■□□□□ 0.13
CSPG4P12-202ENST00000559989 SYCP3Q8IZU3 236 aa15.89■□□□□ 0.13
CSPG4P12-202ENST00000559989 LRP2BPQ9P2M1 347 aa15.89■□□□□ 0.13
CSPG4P12-202ENST00000559989 SEPT14Q6ZU15 432 aa15.89■□□□□ 0.13
CSPG4P12-202ENST00000559989 SRRTQ9BXP5 876 aaKnown RBP15.89■□□□□ 0.13
CSPG4P12-202ENST00000559989 CCDC171Q6TFL3 1326 aa15.88■□□□□ 0.13
CSPG4P12-202ENST00000559989 ATRIPQ8WXE1 791 aa15.88■□□□□ 0.13
CSPG4P12-202ENST00000559989 SIL1Q9H173 461 aa15.88■□□□□ 0.13
CSPG4P12-202ENST00000559989 NLRP2Q9NX02 1062 aa15.88■□□□□ 0.13
CSPG4P12-202ENST00000559989 SETDB1Q15047 1291 aa15.88■□□□□ 0.13
CSPG4P12-202ENST00000559989 CCDC40Q4G0X9 1142 aa15.88■□□□□ 0.13
CSPG4P12-202ENST00000559989 TMC6Q7Z403 805 aa15.88■□□□□ 0.13
CSPG4P12-202ENST00000559989 AACSQ86V21 672 aa15.88■□□□□ 0.13
CSPG4P12-202ENST00000559989 WHAMMQ8TF30 809 aa15.88■□□□□ 0.13
CSPG4P12-202ENST00000559989 CWC27Q6UX04 472 aaKnown RBP15.87■□□□□ 0.13
CSPG4P12-202ENST00000559989 PPFIA2O75334 1257 aa15.87■□□□□ 0.13
CSPG4P12-202ENST00000559989 KANK3Q6NY19 840 aa15.87■□□□□ 0.13
CSPG4P12-202ENST00000559989 RSPH3Q86UC2 560 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms