RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 AXIN1O15169 862 aa6.63□□□□□ -1.35
SPG11-211ENST00000558561 LZTS3O60299 673 aaPredicted RBP6.63□□□□□ -1.35
SPG11-211ENST00000558561 STAU1O95793 577 aaKnown RBP6.63□□□□□ -1.35
SPG11-211ENST00000558561 SRPK2P78362 688 aaKnown RBP6.63□□□□□ -1.35
SPG11-211ENST00000558561 Q6ZVU0 165 aa6.63□□□□□ -1.35
SPG11-211ENST00000558561 SAMD9LQ8IVG5 1584 aa6.63□□□□□ -1.35
SPG11-211ENST00000558561 DACH1Q9UI36 760 aa6.63□□□□□ -1.35
SPG11-211ENST00000558561 NOD1Q9Y239 953 aa6.63□□□□□ -1.35
SPG11-211ENST00000558561 PCDHGA11Q9Y5H2 935 aa6.63□□□□□ -1.35
SPG11-211ENST00000558561 NCOA2Q15596 1464 aa6.62□□□□□ -1.35
SPG11-211ENST00000558561 LRRC9Q6ZRR7 1453 aa6.62□□□□□ -1.35
SPG11-211ENST00000558561 POGZQ7Z3K3 1410 aa6.62□□□□□ -1.35
SPG11-211ENST00000558561 SMCPP49901 116 aaPredicted RBP6.62□□□□□ -1.35
SPG11-211ENST00000558561 Q6ZNB5 142 aa6.62□□□□□ -1.35
SPG11-211ENST00000558561 VRTNQ9H8Y1 702 aa6.62□□□□□ -1.35
SPG11-211ENST00000558561 AAASQ9NRG9 546 aa6.62□□□□□ -1.35
SPG11-211ENST00000558561 PREX2Q70Z35 1606 aa6.61□□□□□ -1.35
SPG11-211ENST00000558561 TIAM1Q13009 1591 aa6.61□□□□□ -1.35
SPG11-211ENST00000558561 LCE2BO14633 110 aa6.61□□□□□ -1.35
SPG11-211ENST00000558561 ZBTB7BO15156 539 aaPredicted RBP6.61□□□□□ -1.35
SPG11-211ENST00000558561 ADH1AP07327 375 aa6.61□□□□□ -1.35
SPG11-211ENST00000558561 BMP1P13497 986 aa6.61□□□□□ -1.35
SPG11-211ENST00000558561 GTF2IP78347 998 aa6.61□□□□□ -1.35
SPG11-211ENST00000558561 CLDN10P78369 228 aa6.61□□□□□ -1.35
SPG11-211ENST00000558561 RELBQ01201 579 aa6.61□□□□□ -1.35
SPG11-211ENST00000558561 CTC1Q2NKJ3 1217 aa6.61□□□□□ -1.35
SPG11-211ENST00000558561 CRIPAKQ8N1N5 446 aa6.61□□□□□ -1.35
SPG11-211ENST00000558561 MEIOBQ8N635 442 aa6.61□□□□□ -1.35
SPG11-211ENST00000558561 SIRT1Q96EB6 747 aa6.61□□□□□ -1.35
SPG11-211ENST00000558561 ZNF395Q9H8N7 513 aaPredicted RBP6.61□□□□□ -1.35
SPG11-211ENST00000558561 KIDINS220Q9ULH0 1771 aa6.61□□□□□ -1.35
SPG11-211ENST00000558561 ADAMTSL3P82987 1691 aa6.61□□□□□ -1.35
SPG11-211ENST00000558561 ATP10AO60312 1499 aa6.6□□□□□ -1.35
SPG11-211ENST00000558561 MBD5Q9P267 1494 aa6.6□□□□□ -1.35
SPG11-211ENST00000558561 SPAG9O60271 1321 aaKnown RBP6.6□□□□□ -1.35
SPG11-211ENST00000558561 ATP5J2-PTCD1G3V325 749 aa6.6□□□□□ -1.35
SPG11-211ENST00000558561 RASA1P20936 1047 aa6.6□□□□□ -1.35
SPG11-211ENST00000558561 HSPA2P54652 639 aa6.6□□□□□ -1.35
SPG11-211ENST00000558561 TRIM46Q7Z4K8 759 aa6.6□□□□□ -1.35
SPG11-211ENST00000558561 TRIM50Q86XT4 487 aa6.6□□□□□ -1.35
SPG11-211ENST00000558561 OGFOD1Q8N543 542 aa6.6□□□□□ -1.35
SPG11-211ENST00000558561 TRIM52Q96A61 297 aa6.6□□□□□ -1.35
SPG11-211ENST00000558561 KIAA1024Q9UPX6 916 aa6.6□□□□□ -1.35
SPG11-211ENST00000558561 ITSN2Q9NZM3 1697 aa6.6□□□□□ -1.35
SPG11-211ENST00000558561 ABCC1P33527 1531 aa6.6□□□□□ -1.35
SPG11-211ENST00000558561 SYCP2Q9BX26 1530 aa6.6□□□□□ -1.35
SPG11-211ENST00000558561 BCORL1Q5H9F3 1711 aa6.59□□□□□ -1.35
SPG11-211ENST00000558561 MADDQ8WXG6 1647 aa6.59□□□□□ -1.35
SPG11-211ENST00000558561 A0A1W2PRU2 124 aa6.59□□□□□ -1.35
SPG11-211ENST00000558561 PTGIRP43119 386 aa6.59□□□□□ -1.35
SPG11-211ENST00000558561 PSME1Q06323 249 aa6.59□□□□□ -1.35
SPG11-211ENST00000558561 CRTC2Q53ET0 693 aaPredicted RBP6.59□□□□□ -1.35
SPG11-211ENST00000558561 C6orf118Q5T5N4 469 aa6.59□□□□□ -1.35
SPG11-211ENST00000558561 MRPL14Q6P1L8 145 aaKnown RBP6.59□□□□□ -1.35
SPG11-211ENST00000558561 CYP2U1Q7Z449 544 aa6.59□□□□□ -1.35
SPG11-211ENST00000558561 PBXIP1Q96AQ6 731 aa6.59□□□□□ -1.35
SPG11-211ENST00000558561 ZNF594Q96JF6 807 aaPredicted RBP6.59□□□□□ -1.35
SPG11-211ENST00000558561 RAB6BQ9NRW1 208 aa6.59□□□□□ -1.35
SPG11-211ENST00000558561 DNAAF2Q9NVR5 837 aaKnown RBP6.59□□□□□ -1.35
SPG11-211ENST00000558561 ZFYVE16Q7Z3T8 1539 aa6.59□□□□□ -1.35
SPG11-211ENST00000558561 ABCA6Q8N139 1617 aa6.58□□□□□ -1.36
SPG11-211ENST00000558561 GGT6Q6P531 493 aa6.58□□□□□ -1.36
SPG11-211ENST00000558561 LINC00528Q8N1L1 170 aa6.58□□□□□ -1.36
SPG11-211ENST00000558561 PURBQ96QR8 312 aaKnown RBP6.58□□□□□ -1.36
SPG11-211ENST00000558561 TSEN34Q9BSV6 310 aaKnown RBP6.58□□□□□ -1.36
SPG11-211ENST00000558561 ARHGEF10LQ9HCE6 1279 aa6.58□□□□□ -1.36
SPG11-211ENST00000558561 ZMYM4Q5VZL5 1548 aa6.58□□□□□ -1.36
SPG11-211ENST00000558561 PTPRMP28827 1452 aa6.58□□□□□ -1.36
SPG11-211ENST00000558561 RIMS1Q86UR5 1692 aaKnown RBP6.58□□□□□ -1.36
SPG11-211ENST00000558561 KDM5CP41229 1560 aa6.57□□□□□ -1.36
SPG11-211ENST00000558561 CFAP74Q9C0B2 1584 aa6.57□□□□□ -1.36
SPG11-211ENST00000558561 DIP2CQ9Y2E4 1556 aa6.57□□□□□ -1.36
SPG11-211ENST00000558561 EHBP1L1Q8N3D4 1523 aa6.57□□□□□ -1.36
SPG11-211ENST00000558561 SUPT6HQ7KZ85 1726 aaKnown RBP6.57□□□□□ -1.36
SPG11-211ENST00000558561 GNRH1P01148 92 aa6.57□□□□□ -1.36
SPG11-211ENST00000558561 BMP2P12643 396 aa6.57□□□□□ -1.36
SPG11-211ENST00000558561 ATP1A2P50993 1020 aa6.57□□□□□ -1.36
SPG11-211ENST00000558561 SCNN1DP51172 638 aa6.57□□□□□ -1.36
SPG11-211ENST00000558561 PTK7Q13308 1070 aa6.57□□□□□ -1.36
SPG11-211ENST00000558561 CCDC102BQ68D86 513 aa6.57□□□□□ -1.36
SPG11-211ENST00000558561 LARP1Q6PKG0 1096 aaKnown RBP6.57□□□□□ -1.36
SPG11-211ENST00000558561 LARGE2Q8N3Y3 721 aa6.57□□□□□ -1.36
SPG11-211ENST00000558561 TPCN2Q8NHX9 752 aa6.57□□□□□ -1.36
SPG11-211ENST00000558561 INSM2Q96T92 566 aaPredicted RBP6.57□□□□□ -1.36
SPG11-211ENST00000558561 ETNK1Q9HBU6 452 aa6.57□□□□□ -1.36
SPG11-211ENST00000558561 ATP13A2Q9NQ11 1180 aa6.57□□□□□ -1.36
SPG11-211ENST00000558561 MLH3Q9UHC1 1453 aa6.57□□□□□ -1.36
SPG11-211ENST00000558561 ARHGEF40Q8TER5 1519 aa6.56□□□□□ -1.36
SPG11-211ENST00000558561 ZNF518AQ6AHZ1 1483 aa6.56□□□□□ -1.36
SPG11-211ENST00000558561 MAGI2Q86UL8 1455 aa6.56□□□□□ -1.36
SPG11-211ENST00000558561 TMEM229AB2RXF0 380 aa6.56□□□□□ -1.36
SPG11-211ENST00000558561 MEN1O00255 615 aa6.56□□□□□ -1.36
SPG11-211ENST00000558561 SPINT1O43278 529 aa6.56□□□□□ -1.36
SPG11-211ENST00000558561 DKK1O94907 266 aa6.56□□□□□ -1.36
SPG11-211ENST00000558561 UPP2O95045 317 aa6.56□□□□□ -1.36
SPG11-211ENST00000558561 IL2RAP01589 272 aa6.56□□□□□ -1.36
SPG11-211ENST00000558561 GDF10P55107 478 aa6.56□□□□□ -1.36
SPG11-211ENST00000558561 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.56□□□□□ -1.36
SPG11-211ENST00000558561 ZFP42Q96MM3 310 aa6.56□□□□□ -1.36
SPG11-211ENST00000558561 RRP7BPQ9NSQ0 103 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms