RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 ZNF594Q96JF6 807 aaPredicted RBP10.81□□□□□ -0.68
RTF1-204ENST00000558117 FHDC1Q9C0D6 1143 aaPredicted RBP10.81□□□□□ -0.68
RTF1-204ENST00000558117 VRTNQ9H8Y1 702 aa10.81□□□□□ -0.68
RTF1-204ENST00000558117 DNMBPQ6XZF7 1577 aa10.81□□□□□ -0.68
RTF1-204ENST00000558117 RAD54L2Q9Y4B4 1467 aa10.81□□□□□ -0.68
RTF1-204ENST00000558117 SLC35F4A4IF30 521 aa10.8□□□□□ -0.68
RTF1-204ENST00000558117 H3BM21 787 aa10.8□□□□□ -0.68
RTF1-204ENST00000558117 SMTNP53814 917 aa10.8□□□□□ -0.68
RTF1-204ENST00000558117 NFX1Q12986 1120 aaKnown RBP10.8□□□□□ -0.68
RTF1-204ENST00000558117 CCDC102BQ68D86 513 aa10.8□□□□□ -0.68
RTF1-204ENST00000558117 WIZO95785 1651 aa10.79□□□□□ -0.68
RTF1-204ENST00000558117 TREML4Q6UXN2 200 aa10.79□□□□□ -0.68
RTF1-204ENST00000558117 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.79□□□□□ -0.68
RTF1-204ENST00000558117 RHBDD1Q8TEB9 315 aa10.79□□□□□ -0.68
RTF1-204ENST00000558117 IRF7Q92985 503 aa10.79□□□□□ -0.68
RTF1-204ENST00000558117 ZNF358Q9NW07 568 aa10.79□□□□□ -0.68
RTF1-204ENST00000558117 MAPKBP1O60336 1514 aa10.79□□□□□ -0.68
RTF1-204ENST00000558117 CRTC2Q53ET0 693 aaPredicted RBP10.78□□□□□ -0.68
RTF1-204ENST00000558117 WDR44Q5JSH3 913 aa10.78□□□□□ -0.68
RTF1-204ENST00000558117 TIMMDC1Q9NPL8 285 aa10.78□□□□□ -0.68
RTF1-204ENST00000558117 DKK1O94907 266 aa10.77□□□□□ -0.69
RTF1-204ENST00000558117 PPARGC1BQ86YN6 1023 aaKnown RBP10.77□□□□□ -0.69
RTF1-204ENST00000558117 SIX5Q8N196 739 aa10.77□□□□□ -0.69
RTF1-204ENST00000558117 SLC4A9Q96Q91 983 aa10.77□□□□□ -0.69
RTF1-204ENST00000558117 SENP3-EIF4A1A0A087X0R7 540 aa10.76□□□□□ -0.69
RTF1-204ENST00000558117 A6NJY4 79 aa10.76□□□□□ -0.69
RTF1-204ENST00000558117 ITGA6P23229 1130 aa10.76□□□□□ -0.69
RTF1-204ENST00000558117 PHKA2P46019 1235 aa10.76□□□□□ -0.69
RTF1-204ENST00000558117 PTK7Q13308 1070 aa10.76□□□□□ -0.69
RTF1-204ENST00000558117 GAS2L1Q99501 681 aaPredicted RBP10.76□□□□□ -0.69
RTF1-204ENST00000558117 DYRK1BQ9Y463 629 aa10.76□□□□□ -0.69
RTF1-204ENST00000558117 CEP170Q5SW79 1584 aa10.76□□□□□ -0.69
RTF1-204ENST00000558117 GRIN2BQ13224 1484 aa10.75□□□□□ -0.69
RTF1-204ENST00000558117 FAM196BA6NMK8 535 aa10.75□□□□□ -0.69
RTF1-204ENST00000558117 USP17L15C9J2P7 530 aa10.75□□□□□ -0.69
RTF1-204ENST00000558117 USP17L10C9JJH3 530 aa10.75□□□□□ -0.69
RTF1-204ENST00000558117 USP17L13C9JLJ4 530 aa10.75□□□□□ -0.69
RTF1-204ENST00000558117 USP17L12C9JPN9 530 aa10.75□□□□□ -0.69
RTF1-204ENST00000558117 USP17L11C9JVI0 530 aa10.75□□□□□ -0.69
RTF1-204ENST00000558117 USP17L21D6R901 530 aa10.75□□□□□ -0.69
RTF1-204ENST00000558117 USP17L18D6R9N7 530 aa10.75□□□□□ -0.69
RTF1-204ENST00000558117 USP17L22D6RA61 530 aa10.75□□□□□ -0.69
RTF1-204ENST00000558117 USP17L17D6RBQ6 530 aa10.75□□□□□ -0.69
RTF1-204ENST00000558117 USP17L19D6RCP7 530 aa10.75□□□□□ -0.69
RTF1-204ENST00000558117 USP17L20D6RJB6 530 aa10.75□□□□□ -0.69
RTF1-204ENST00000558117 USP17L24Q0WX57 530 aa10.75□□□□□ -0.69
RTF1-204ENST00000558117 C4orf17Q53FE4 359 aa10.75□□□□□ -0.69
RTF1-204ENST00000558117 RIPOR1Q6ZS17 1223 aa10.75□□□□□ -0.69
RTF1-204ENST00000558117 NIFKQ9BYG3 293 aaKnown RBP10.75□□□□□ -0.69
RTF1-204ENST00000558117 SOGA1O94964 1423 aa10.75□□□□□ -0.69
RTF1-204ENST00000558117 CDC14CA4D256 554 aa10.74□□□□□ -0.69
RTF1-204ENST00000558117 PLA2G4AP47712 749 aa10.74□□□□□ -0.69
RTF1-204ENST00000558117 MTFR1Q15390 333 aa10.74□□□□□ -0.69
RTF1-204ENST00000558117 PBXIP1Q96AQ6 731 aa10.74□□□□□ -0.69
RTF1-204ENST00000558117 PRDM2Q13029 1718 aa10.73□□□□□ -0.69
RTF1-204ENST00000558117 A0A1B0GTH6 734 aa10.73□□□□□ -0.69
RTF1-204ENST00000558117 SFI1A8K8P3 1242 aa10.73□□□□□ -0.69
RTF1-204ENST00000558117 CDK2AP1O14519 115 aa10.73□□□□□ -0.69
RTF1-204ENST00000558117 SEC13P55735 322 aa10.73□□□□□ -0.69
RTF1-204ENST00000558117 CABP1Q9NZU7 370 aa10.73□□□□□ -0.69
RTF1-204ENST00000558117 COL17A1Q9UMD9 1497 aaPredicted RBP10.73□□□□□ -0.69
RTF1-204ENST00000558117 TSPOAP1O95153 1857 aa10.72□□□□□ -0.69
RTF1-204ENST00000558117 M0R2N6 131 aa10.72□□□□□ -0.69
RTF1-204ENST00000558117 WDR97A6NE52 1622 aa10.72□□□□□ -0.69
RTF1-204ENST00000558117 H7C1W4 665 aa10.71□□□□□ -0.69
RTF1-204ENST00000558117 DPYDQ12882 1025 aa10.71□□□□□ -0.69
RTF1-204ENST00000558117 SV2AQ7L0J3 742 aa10.71□□□□□ -0.69
RTF1-204ENST00000558117 ARXQ96QS3 562 aa10.71□□□□□ -0.69
RTF1-204ENST00000558117 SCHIP1Q9P0W5 487 aaPredicted RBP10.71□□□□□ -0.69
RTF1-204ENST00000558117 F11P03951 625 aa10.7□□□□□ -0.7
RTF1-204ENST00000558117 VSIG8P0DPA2 414 aa10.7□□□□□ -0.7
RTF1-204ENST00000558117 ANKMY2Q8IV38 441 aa10.7□□□□□ -0.7
RTF1-204ENST00000558117 TNS4Q8IZW8 715 aa10.7□□□□□ -0.7
RTF1-204ENST00000558117 CHMP3Q9Y3E7 222 aa10.7□□□□□ -0.7
RTF1-204ENST00000558117 TOP2BQ02880 1626 aa10.69□□□□□ -0.7
RTF1-204ENST00000558117 ERBB4Q15303 1308 aa10.69□□□□□ -0.7
RTF1-204ENST00000558117 CSB-PGBD3P0DP91 1061 aa10.69□□□□□ -0.7
RTF1-204ENST00000558117 NBPF1Q3BBV0 1214 aa10.69□□□□□ -0.7
RTF1-204ENST00000558117 SLC9A9Q8IVB4 645 aa10.69□□□□□ -0.7
RTF1-204ENST00000558117 PGBD3Q8N328 593 aa10.69□□□□□ -0.7
RTF1-204ENST00000558117 TSEN2Q8NCE0 465 aaKnown RBP10.69□□□□□ -0.7
RTF1-204ENST00000558117 AIDAQ96BJ3 306 aa10.69□□□□□ -0.7
RTF1-204ENST00000558117 GMCL1Q96IK5 515 aa10.69□□□□□ -0.7
RTF1-204ENST00000558117 GPAMQ9HCL2 828 aa10.69□□□□□ -0.7
RTF1-204ENST00000558117 ATG7O95352 703 aa10.68□□□□□ -0.7
RTF1-204ENST00000558117 TRIM22Q8IYM9 498 aa10.68□□□□□ -0.7
RTF1-204ENST00000558117 VWA5B2Q8N398 1253 aa10.68□□□□□ -0.7
RTF1-204ENST00000558117 NANOS1Q8WY41 292 aaKnown RBP10.68□□□□□ -0.7
RTF1-204ENST00000558117 HINFPQ9BQA5 517 aa10.68□□□□□ -0.7
RTF1-204ENST00000558117 ZMIZ1Q9ULJ6 1067 aa10.68□□□□□ -0.7
RTF1-204ENST00000558117 NOVA2Q9UNW9 492 aaKnown RBP10.68□□□□□ -0.7
RTF1-204ENST00000558117 IQSEC3Q9UPP2 1182 aaPredicted RBP10.68□□□□□ -0.7
RTF1-204ENST00000558117 USP3Q9Y6I4 520 aa10.68□□□□□ -0.7
RTF1-204ENST00000558117 SHROOM2Q13796 1616 aa10.67□□□□□ -0.7
RTF1-204ENST00000558117 LGR5O75473 907 aa10.67□□□□□ -0.7
RTF1-204ENST00000558117 EPHA4P54764 986 aa10.67□□□□□ -0.7
RTF1-204ENST00000558117 FOXR1Q6PIV2 292 aa10.67□□□□□ -0.7
RTF1-204ENST00000558117 FAM200AQ8TCP9 573 aa10.67□□□□□ -0.7
RTF1-204ENST00000558117 TATP17735 454 aaPredicted RBP10.66□□□□□ -0.7
RTF1-204ENST00000558117 MSX1P28360 303 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms