RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 MSH6P52701 1360 aa17.88■□□□□ 0.45
CUX1-214ENST00000550008 NEO1Q92859 1461 aa17.88■□□□□ 0.45
CUX1-214ENST00000550008 DTNBO60941 627 aa17.88■□□□□ 0.45
CUX1-214ENST00000550008 ANKRD13DQ6ZTN6 518 aa17.88■□□□□ 0.45
CUX1-214ENST00000550008 ERICH2A1L162 156 aa17.88■□□□□ 0.45
CUX1-214ENST00000550008 CADPS2Q86UW7 1296 aa17.88■□□□□ 0.45
CUX1-214ENST00000550008 TMEM2Q9UHN6 1383 aa17.88■□□□□ 0.45
CUX1-214ENST00000550008 DHX16O60231 1041 aaKnown RBP17.87■□□□□ 0.45
CUX1-214ENST00000550008 ATP8B2P98198 1209 aa17.87■□□□□ 0.45
CUX1-214ENST00000550008 TRMT2AQ8IZ69 625 aaKnown RBP17.87■□□□□ 0.45
CUX1-214ENST00000550008 PLEKHF1Q96S99 279 aa17.87■□□□□ 0.45
CUX1-214ENST00000550008 METTL24Q5JXM2 366 aa17.87■□□□□ 0.45
CUX1-214ENST00000550008 CCDC34Q96HJ3 373 aa17.87■□□□□ 0.45
CUX1-214ENST00000550008 AKAP4Q5JQC9 854 aa17.86■□□□□ 0.45
CUX1-214ENST00000550008 NBPF6Q5VWK0 638 aa17.86■□□□□ 0.45
CUX1-214ENST00000550008 NBPF4Q96M43 638 aa17.86■□□□□ 0.45
CUX1-214ENST00000550008 ZFYVE16Q7Z3T8 1539 aa17.86■□□□□ 0.45
CUX1-214ENST00000550008 STARD3NLO95772 234 aa17.86■□□□□ 0.45
CUX1-214ENST00000550008 SPC24Q8NBT2 197 aa17.86■□□□□ 0.45
CUX1-214ENST00000550008 TSPY26PQ9H489 355 aa17.86■□□□□ 0.45
CUX1-214ENST00000550008 IP6K1Q92551 441 aa17.85■□□□□ 0.45
CUX1-214ENST00000550008 MARCH6O60337 910 aa17.85■□□□□ 0.45
CUX1-214ENST00000550008 IFIT1P09914 478 aaKnown RBP17.85■□□□□ 0.45
CUX1-214ENST00000550008 DDX46Q7L014 1031 aaKnown RBP17.85■□□□□ 0.45
CUX1-214ENST00000550008 SNRPA1P09661 255 aaKnown RBP17.84■□□□□ 0.45
CUX1-214ENST00000550008 VPS53Q5VIR6 699 aa17.84■□□□□ 0.45
CUX1-214ENST00000550008 GOLIM4O00461 696 aa17.84■□□□□ 0.45
CUX1-214ENST00000550008 MAP3K5Q99683 1374 aa17.84■□□□□ 0.45
CUX1-214ENST00000550008 GUCY1B3Q02153 619 aa17.84■□□□□ 0.45
CUX1-214ENST00000550008 ABCF2Q9UG63 623 aa17.84■□□□□ 0.45
CUX1-214ENST00000550008 KDM5AP29375 1690 aaKnown RBP17.84■□□□□ 0.45
CUX1-214ENST00000550008 GRM8O00222 908 aa17.83■□□□□ 0.45
CUX1-214ENST00000550008 NOL10Q9BSC4 688 aaKnown RBP17.83■□□□□ 0.45
CUX1-214ENST00000550008 PRR36Q9H6K5 1346 aa17.83■□□□□ 0.44
CUX1-214ENST00000550008 PNMA6EA0A0J9YXQ4 647 aa17.83■□□□□ 0.44
CUX1-214ENST00000550008 KCNQ3O43525 872 aa17.83■□□□□ 0.44
CUX1-214ENST00000550008 CLSTN1O94985 981 aa17.83■□□□□ 0.44
CUX1-214ENST00000550008 BAG4O95429 457 aaKnown RBP17.83■□□□□ 0.44
CUX1-214ENST00000550008 KRT85P78386 507 aa17.83■□□□□ 0.44
CUX1-214ENST00000550008 TMX3Q96JJ7 454 aa17.83■□□□□ 0.44
CUX1-214ENST00000550008 C19orf44Q9H6X5 657 aa17.83■□□□□ 0.44
CUX1-214ENST00000550008 FAM13BQ9NYF5 915 aa17.83■□□□□ 0.44
CUX1-214ENST00000550008 RBM27Q9P2N5 1060 aaKnown RBP17.83■□□□□ 0.44
CUX1-214ENST00000550008 R3HCC1Q9Y3T6 440 aaKnown RBP17.83■□□□□ 0.44
CUX1-214ENST00000550008 KLHDC4Q8TBB5 520 aa17.83■□□□□ 0.44
CUX1-214ENST00000550008 PLEKHG3A1L390 1219 aa17.82■□□□□ 0.44
CUX1-214ENST00000550008 KSR2Q6VAB6 950 aa17.82■□□□□ 0.44
CUX1-214ENST00000550008 ESYT1Q9BSJ8 1104 aa17.82■□□□□ 0.44
CUX1-214ENST00000550008 MLH3Q9UHC1 1453 aa17.82■□□□□ 0.44
CUX1-214ENST00000550008 TPD52L1Q16890 204 aaPredicted RBP17.82■□□□□ 0.44
CUX1-214ENST00000550008 ZGPATQ8N5A5 531 aaKnown RBP17.82■□□□□ 0.44
CUX1-214ENST00000550008 TRMT112Q9UI30 125 aaKnown RBP17.82■□□□□ 0.44
CUX1-214ENST00000550008 ME1P48163 572 aa17.82■□□□□ 0.44
CUX1-214ENST00000550008 SAFBQ15424 915 aaKnown RBP eCLIP17.82■□□□□ 0.44
CUX1-214ENST00000550008 SAMD1Q6SPF0 538 aaPredicted RBP17.82■□□□□ 0.44
CUX1-214ENST00000550008 LMBR1LQ6UX01 489 aa17.82■□□□□ 0.44
CUX1-214ENST00000550008 NECAB1Q8N987 351 aa17.82■□□□□ 0.44
CUX1-214ENST00000550008 TRIM5Q9C035 493 aa17.82■□□□□ 0.44
CUX1-214ENST00000550008 RAB11FIP4Q86YS3 637 aa17.82■□□□□ 0.44
CUX1-214ENST00000550008 CAMK4Q16566 473 aa17.81■□□□□ 0.44
CUX1-214ENST00000550008 LRRC2Q9BYS8 371 aa17.81■□□□□ 0.44
CUX1-214ENST00000550008 STK38Q15208 465 aa17.81■□□□□ 0.44
CUX1-214ENST00000550008 ANKRD1Q15327 319 aa17.81■□□□□ 0.44
CUX1-214ENST00000550008 USP19O94966 1318 aa17.81■□□□□ 0.44
CUX1-214ENST00000550008 NBPF7P0C2Y1 421 aaPredicted RBP17.81■□□□□ 0.44
CUX1-214ENST00000550008 HAND2P61296 217 aa17.81■□□□□ 0.44
CUX1-214ENST00000550008 TFIP11Q9UBB9 837 aaKnown RBP17.81■□□□□ 0.44
CUX1-214ENST00000550008 KINO60870 393 aaKnown RBP17.8■□□□□ 0.44
CUX1-214ENST00000550008 IFIT5Q13325 482 aaKnown RBP17.8■□□□□ 0.44
CUX1-214ENST00000550008 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.8■□□□□ 0.448e-7■■■□□ 15.1
CUX1-214ENST00000550008 NUP133Q8WUM0 1156 aa17.8■□□□□ 0.44
CUX1-214ENST00000550008 LIMCH1Q9UPQ0 1083 aa17.8■□□□□ 0.44
CUX1-214ENST00000550008 CCT2P78371 535 aaKnown RBP17.8■□□□□ 0.44
CUX1-214ENST00000550008 IL17REQ8NFR9 667 aa17.8■□□□□ 0.44
CUX1-214ENST00000550008 SBNO1A3KN83 1393 aa17.79■□□□□ 0.44
CUX1-214ENST00000550008 RNMTO43148 476 aaKnown RBP17.79■□□□□ 0.44
CUX1-214ENST00000550008 CPA1P15085 419 aa17.79■□□□□ 0.44
CUX1-214ENST00000550008 CCDC82Q8N4S0 544 aa17.79■□□□□ 0.44
CUX1-214ENST00000550008 INSRP06213 1382 aa17.79■□□□□ 0.44
CUX1-214ENST00000550008 SPATA32Q96LK8 384 aa17.79■□□□□ 0.44
CUX1-214ENST00000550008 NPHP3Q7Z494 1330 aa17.79■□□□□ 0.44
CUX1-214ENST00000550008 ROBO2Q9HCK4 1378 aa17.79■□□□□ 0.44
CUX1-214ENST00000550008 ZCRB1Q8TBF4 217 aaKnown RBP17.79■□□□□ 0.44
CUX1-214ENST00000550008 PIBF1Q8WXW3 757 aa17.79■□□□□ 0.44
CUX1-214ENST00000550008 PANK2Q9BZ23 570 aa17.79■□□□□ 0.44
CUX1-214ENST00000550008 EVI5LQ96CN4 794 aa17.79■□□□□ 0.44
CUX1-214ENST00000550008 MYOM2P54296 1465 aa17.78■□□□□ 0.44
CUX1-214ENST00000550008 CDC42BPBQ9Y5S2 1711 aa17.78■□□□□ 0.44
CUX1-214ENST00000550008 PKNOX2Q96KN3 472 aa17.78■□□□□ 0.44
CUX1-214ENST00000550008 LRP2BPQ9P2M1 347 aa17.78■□□□□ 0.44
CUX1-214ENST00000550008 TSPOAP1O95153 1857 aa17.78■□□□□ 0.44
CUX1-214ENST00000550008 LDHAL6AQ6ZMR3 332 aa17.78■□□□□ 0.44
CUX1-214ENST00000550008 AMOTL1Q8IY63 956 aa17.78■□□□□ 0.44
CUX1-214ENST00000550008 LINS1Q8NG48 757 aa17.78■□□□□ 0.44
CUX1-214ENST00000550008 ZSCAN31Q96LW9 406 aaPredicted RBP17.78■□□□□ 0.44
CUX1-214ENST00000550008 CLTCL1P53675 1640 aa17.78■□□□□ 0.44
CUX1-214ENST00000550008 ADCY10Q96PN6 1610 aa17.78■□□□□ 0.44
CUX1-214ENST00000550008 TNMDQ9H2S6 317 aa17.77■□□□□ 0.44
CUX1-214ENST00000550008 CWC25Q9NXE8 425 aaPredicted RBP17.77■□□□□ 0.44
CUX1-214ENST00000550008 EXOC5O00471 708 aa17.77■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms