RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 TNRC6CQ9HCJ0 1690 aaKnown RBP23.03■■□□□ 1.28
VPS29-204ENST00000548259 H0YIN7 160 aa23.03■■□□□ 1.28
VPS29-204ENST00000548259 RASSF7Q02833 373 aa23.03■■□□□ 1.28
VPS29-204ENST00000548259 TRIM26Q12899 539 aaPredicted RBP23.03■■□□□ 1.28
VPS29-204ENST00000548259 NFIXQ14938 502 aa23.03■■□□□ 1.28
VPS29-204ENST00000548259 KNSTRNQ9Y448 316 aa23.03■■□□□ 1.28
VPS29-204ENST00000548259 SERPINB2P05120 415 aa23.02■■□□□ 1.28
VPS29-204ENST00000548259 CYP19A1P11511 503 aaPredicted RBP23.02■■□□□ 1.28
VPS29-204ENST00000548259 DPY19L2Q6NUT2 758 aa23.02■■□□□ 1.28
VPS29-204ENST00000548259 COL15A1P39059 1388 aa23.01■■□□□ 1.27
VPS29-204ENST00000548259 CAPN15O75808 1086 aa23.01■■□□□ 1.27
VPS29-204ENST00000548259 C2CD5Q86YS7 1000 aa23.01■■□□□ 1.27
VPS29-204ENST00000548259 IL13P35225 146 aa23■■□□□ 1.27
VPS29-204ENST00000548259 VSIG10Q8N0Z9 540 aa23■■□□□ 1.27
VPS29-204ENST00000548259 PDZRN3Q9UPQ7 1066 aa23■■□□□ 1.27
VPS29-204ENST00000548259 A0A087WZG4 1122 aa22.99■■□□□ 1.27
VPS29-204ENST00000548259 CLSPNQ9HAW4 1339 aa22.99■■□□□ 1.27
VPS29-204ENST00000548259 RNMTO43148 476 aaKnown RBP22.98■■□□□ 1.27
VPS29-204ENST00000548259 STARD3NLO95772 234 aa22.98■■□□□ 1.27
VPS29-204ENST00000548259 TJP1Q07157 1748 aa22.98■■□□□ 1.27
VPS29-204ENST00000548259 PRELPP51888 382 aa22.97■■□□□ 1.27
VPS29-204ENST00000548259 SLC39A6Q13433 755 aa22.97■■□□□ 1.27
VPS29-204ENST00000548259 LGR6Q9HBX8 967 aa22.97■■□□□ 1.27
VPS29-204ENST00000548259 ZBTB1Q9Y2K1 713 aa22.97■■□□□ 1.27
VPS29-204ENST00000548259 NPM2Q86SE8 214 aaKnown RBP22.96■■□□□ 1.27
VPS29-204ENST00000548259 TTC5Q8N0Z6 440 aa22.96■■□□□ 1.27
VPS29-204ENST00000548259 HSPA1AP0DMV8 641 aaKnown RBP22.95■■□□□ 1.26
VPS29-204ENST00000548259 HSPA1BP0DMV9 641 aaKnown RBP22.95■■□□□ 1.26
VPS29-204ENST00000548259 HSPA5P11021 654 aaKnown RBP22.95■■□□□ 1.26
VPS29-204ENST00000548259 CANXP27824 592 aaKnown RBP22.95■■□□□ 1.26
VPS29-204ENST00000548259 PDE6BP35913 854 aa22.94■■□□□ 1.26
VPS29-204ENST00000548259 BICDL1Q6ZP65 573 aa22.93■■□□□ 1.26
VPS29-204ENST00000548259 ZNF622Q969S3 477 aaKnown RBP eCLIP22.93■■□□□ 1.26
VPS29-204ENST00000548259 NFKBIEO00221 500 aa22.92■■□□□ 1.26
VPS29-204ENST00000548259 ERFEQ4G0M1 354 aa22.92■■□□□ 1.26
VPS29-204ENST00000548259 TEX13AQ9BXU3 409 aaPredicted RBP22.92■■□□□ 1.26
VPS29-204ENST00000548259 BCL2L12Q9HB09 334 aa22.92■■□□□ 1.26
VPS29-204ENST00000548259 SBF1O95248 1867 aa22.92■■□□□ 1.26
VPS29-204ENST00000548259 MRC1P22897 1456 aa22.92■■□□□ 1.26
VPS29-204ENST00000548259 SCN11AQ9UI33 1791 aa22.91■■□□□ 1.26
VPS29-204ENST00000548259 NPHP1O15259 732 aa22.91■■□□□ 1.26
VPS29-204ENST00000548259 HMOX1P09601 288 aa22.91■■□□□ 1.26
VPS29-204ENST00000548259 BRIP1Q9BX63 1249 aa22.91■■□□□ 1.26
VPS29-204ENST00000548259 ADAMTS7Q9UKP4 1686 aa22.9■■□□□ 1.26
VPS29-204ENST00000548259 PCNTO95613 3336 aa22.9■■□□□ 1.26
VPS29-204ENST00000548259 EIF5P55010 431 aaKnown RBP22.89■■□□□ 1.25
VPS29-204ENST00000548259 TEFQ10587 303 aa22.88■■□□□ 1.25
VPS29-204ENST00000548259 MTHFSDQ2M296 383 aaKnown RBP22.88■■□□□ 1.25
VPS29-204ENST00000548259 SOGA3Q5TF21 947 aa22.88■■□□□ 1.25
VPS29-204ENST00000548259 CARMIL3Q8ND23 1372 aa22.88■■□□□ 1.25
VPS29-204ENST00000548259 C21orf2O43822 256 aa22.87■■□□□ 1.25
VPS29-204ENST00000548259 CNKSR1Q969H4 720 aa22.87■■□□□ 1.25
VPS29-204ENST00000548259 ZNF330Q9Y3S2 320 aaPredicted RBP22.87■■□□□ 1.25
VPS29-204ENST00000548259 NRXN2Q9P2S2 1712 aa22.87■■□□□ 1.25
VPS29-204ENST00000548259 DIAPH1O60610 1272 aaKnown RBP22.86■■□□□ 1.25
VPS29-204ENST00000548259 CHADLQ6NUI6 762 aa22.86■■□□□ 1.25
VPS29-204ENST00000548259 TAOK3Q9H2K8 898 aa22.86■■□□□ 1.25
VPS29-204ENST00000548259 CREBZFQ9NS37 354 aa22.86■■□□□ 1.25
VPS29-204ENST00000548259 ZNF219Q9P2Y4 722 aaPredicted RBP22.86■■□□□ 1.25
VPS29-204ENST00000548259 LTBP3Q9NS15 1303 aa22.85■■□□□ 1.25
VPS29-204ENST00000548259 TBC1D9BQ66K14 1250 aa22.85■■□□□ 1.25
VPS29-204ENST00000548259 SETDB2Q96T68 719 aa22.85■■□□□ 1.25
VPS29-204ENST00000548259 IL6STP40189 918 aaPredicted RBP22.84■■□□□ 1.25
VPS29-204ENST00000548259 ST5P78524 1137 aa22.84■■□□□ 1.25
VPS29-204ENST00000548259 AMER1Q5JTC6 1135 aaPredicted RBP22.84■■□□□ 1.25
VPS29-204ENST00000548259 CNBD1Q8NA66 436 aa22.84■■□□□ 1.25
VPS29-204ENST00000548259 PCGF6Q9BYE7 350 aa22.84■■□□□ 1.25
VPS29-204ENST00000548259 AFDNP55196 1824 aaKnown RBP22.84■■□□□ 1.25
VPS29-204ENST00000548259 IQCA1LA6NCM1 817 aa22.83■■□□□ 1.25
VPS29-204ENST00000548259 POTECB2RU33 542 aa22.83■■□□□ 1.25
VPS29-204ENST00000548259 PRR5LQ6MZQ0 368 aa22.83■■□□□ 1.25
VPS29-204ENST00000548259 DLEC1Q9Y238 1755 aa22.83■■□□□ 1.24
VPS29-204ENST00000548259 STYK1Q6J9G0 422 aa22.82■■□□□ 1.24
VPS29-204ENST00000548259 ZNF790Q6PG37 636 aa22.82■■□□□ 1.24
VPS29-204ENST00000548259 GAS2L2Q8NHY3 880 aa22.82■■□□□ 1.24
VPS29-204ENST00000548259 TBC1D2BQ9UPU7 963 aa22.82■■□□□ 1.24
VPS29-204ENST00000548259 HEG1Q9ULI3 1381 aa22.81■■□□□ 1.24
VPS29-204ENST00000548259 ZNF496Q96IT1 587 aaPredicted RBP22.81■■□□□ 1.24
VPS29-204ENST00000548259 FMNL2Q96PY5 1086 aa22.81■■□□□ 1.24
VPS29-204ENST00000548259 TIAM2Q8IVF5 1701 aa22.81■■□□□ 1.24
VPS29-204ENST00000548259 GNAT3A8MTJ3 354 aa22.8■■□□□ 1.24
VPS29-204ENST00000548259 MKRN1Q9UHC7 482 aaKnown RBP22.8■■□□□ 1.24
VPS29-204ENST00000548259 MASTLQ96GX5 879 aa22.79■■□□□ 1.24
VPS29-204ENST00000548259 DDNO94850 711 aaPredicted RBP22.78■■□□□ 1.24
VPS29-204ENST00000548259 PRPF40BQ6NWY9 871 aaKnown RBP22.78■■□□□ 1.24
VPS29-204ENST00000548259 AIDAQ96BJ3 306 aa22.78■■□□□ 1.24
VPS29-204ENST00000548259 SRGNP10124 158 aa22.77■■□□□ 1.24
VPS29-204ENST00000548259 LDHDQ86WU2 507 aa22.77■■□□□ 1.24
VPS29-204ENST00000548259 CCDC24Q8N4L8 307 aa22.77■■□□□ 1.24
VPS29-204ENST00000548259 U2SURPO15042 1029 aaKnown RBP22.76■■□□□ 1.23
VPS29-204ENST00000548259 ZNF652Q9Y2D9 606 aa22.76■■□□□ 1.23
VPS29-204ENST00000548259 CCDC93Q567U6 631 aa22.75■■□□□ 1.23
VPS29-204ENST00000548259 DZIP3Q86Y13 1208 aaKnown RBP22.75■■□□□ 1.23
VPS29-204ENST00000548259 CAMTA2O94983 1202 aa22.74■■□□□ 1.23
VPS29-204ENST00000548259 NBPF5PQ86XG9 351 aaPredicted RBP22.74■■□□□ 1.23
VPS29-204ENST00000548259 IL17REQ8NFR9 667 aa22.74■■□□□ 1.23
VPS29-204ENST00000548259 A1BGP04217 495 aa22.73■■□□□ 1.23
VPS29-204ENST00000548259 CC2D1BQ5T0F9 858 aaKnown RBP22.73■■□□□ 1.23
VPS29-204ENST00000548259 CLEC4GQ6UXB4 293 aa22.73■■□□□ 1.23
VPS29-204ENST00000548259 L3MBTL3Q96JM7 780 aaPredicted RBP22.73■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms