RNA–Protein interactions for RNA: ENST00000542817.1

NPIPB3-210, Transcript of nuclear pore complex interacting protein family member B3, human

TSL 5 BASIC

Gene NPIPB3, Length 1,342 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NPIPB3-210	ENST00000542817	NBPF26	B4DH59	902 aa		13.85	□□□□□ -0.19
NPIPB3-210	ENST00000542817	ELL2	O00472	640 aa	Predicted RBP	13.85	□□□□□ -0.19
NPIPB3-210	ENST00000542817	HOXB7	P09629	217 aa		13.85	□□□□□ -0.19
NPIPB3-210	ENST00000542817	NBPF14	Q5TI25	921 aa		13.85	□□□□□ -0.19
NPIPB3-210	ENST00000542817	NBPF10	Q6P3W6	841 aa	Known RBP	13.85	□□□□□ -0.19
NPIPB3-210	ENST00000542817	NBPF15	Q8N660	670 aa		13.85	□□□□□ -0.19
NPIPB3-210	ENST00000542817	BAG6	P46379	1132 aa		13.84	□□□□□ -0.19
NPIPB3-210	ENST00000542817	ANO8	Q9HCE9	1232 aa	Predicted RBP	13.84	□□□□□ -0.19
NPIPB3-210	ENST00000542817	A1BG	P04217	495 aa		13.83	□□□□□ -0.2
NPIPB3-210	ENST00000542817	ZNF827	Q17R98	1081 aa		13.83	□□□□□ -0.2
NPIPB3-210	ENST00000542817	PROSER3	Q2NL68	480 aa		13.83	□□□□□ -0.2
NPIPB3-210	ENST00000542817	TWISTNB	Q3B726	338 aa	Predicted RBP	13.83	□□□□□ -0.2
NPIPB3-210	ENST00000542817	AKT1S1	Q96B36	256 aa		13.83	□□□□□ -0.2
NPIPB3-210	ENST00000542817	NUP188	Q5SRE5	1749 aa		13.83	□□□□□ -0.2
NPIPB3-210	ENST00000542817	C4B	P0C0L5	1744 aa		13.82	□□□□□ -0.2
NPIPB3-210	ENST00000542817	CRKL	P46109	303 aa	Known RBP	13.82	□□□□□ -0.2
NPIPB3-210	ENST00000542817	PIP4K2A	P48426	406 aa	Predicted RBP	13.82	□□□□□ -0.2
NPIPB3-210	ENST00000542817	SF3B2	Q13435	895 aa	Known RBP	13.82	□□□□□ -0.2
NPIPB3-210	ENST00000542817	SMIM5	Q71RC9	77 aa		13.82	□□□□□ -0.2
NPIPB3-210	ENST00000542817	LAMB4	A4D0S4	1761 aa		13.82	□□□□□ -0.2
NPIPB3-210	ENST00000542817	SOS1	Q07889	1333 aa	Predicted RBP	13.82	□□□□□ -0.2
NPIPB3-210	ENST00000542817	CNTNAP4	Q9C0A0	1308 aa		13.82	□□□□□ -0.2
NPIPB3-210	ENST00000542817	RC3H1	Q5TC82	1133 aa	Known RBP	13.81	□□□□□ -0.2
NPIPB3-210	ENST00000542817	TEX13A	Q9BXU3	409 aa	Predicted RBP	13.81	□□□□□ -0.2
NPIPB3-210	ENST00000542817	ZBTB1	Q9Y2K1	713 aa		13.81	□□□□□ -0.2
NPIPB3-210	ENST00000542817	EIF2S2	P20042	333 aa	Known RBP	13.8	□□□□□ -0.2
NPIPB3-210	ENST00000542817	NECTIN2	Q92692	538 aa		13.8	□□□□□ -0.2
NPIPB3-210	ENST00000542817	TCERG1	O14776	1098 aa	Known RBP	13.79	□□□□□ -0.2
NPIPB3-210	ENST00000542817	STARD3NL	O95772	234 aa		13.79	□□□□□ -0.2
NPIPB3-210	ENST00000542817	ANXA1	P04083	346 aa		13.79	□□□□□ -0.2
NPIPB3-210	ENST00000542817	CENPB	P07199	599 aa	Predicted RBP	13.79	□□□□□ -0.2
NPIPB3-210	ENST00000542817	EIF5	P55010	431 aa	Known RBP	13.79	□□□□□ -0.2
NPIPB3-210	ENST00000542817	HDGFL1	Q5TGJ6	251 aa		13.79	□□□□□ -0.2
NPIPB3-210	ENST00000542817	CCDC87	Q9NVE4	849 aa		13.79	□□□□□ -0.2
NPIPB3-210	ENST00000542817	SOCS7	O14512	581 aa		13.78	□□□□□ -0.2
NPIPB3-210	ENST00000542817	CT47B1	P0C2W7	299 aa	Predicted RBP	13.78	□□□□□ -0.2
NPIPB3-210	ENST00000542817	RARS	P54136	660 aa	Known RBP	13.78	□□□□□ -0.2
NPIPB3-210	ENST00000542817	SSH1	Q8WYL5	1049 aa		13.78	□□□□□ -0.2
NPIPB3-210	ENST00000542817	CHPF2	Q9P2E5	772 aa		13.78	□□□□□ -0.2
NPIPB3-210	ENST00000542817	G2E3	Q7L622	706 aa		13.77	□□□□□ -0.21
NPIPB3-210	ENST00000542817	DDX21	Q9NR30	783 aa	Known RBP eCLIP	13.77	□□□□□ -0.21
NPIPB3-210	ENST00000542817	ERBB4	Q15303	1308 aa		13.77	□□□□□ -0.21
NPIPB3-210	ENST00000542817	UBR3	Q6ZT12	1888 aa		13.77	□□□□□ -0.21
NPIPB3-210	ENST00000542817	TUBGCP6	Q96RT7	1819 aa		13.76	□□□□□ -0.21
NPIPB3-210	ENST00000542817	RPS6KA4	O75676	772 aa		13.76	□□□□□ -0.21
NPIPB3-210	ENST00000542817	MRPL50	Q8N5N7	158 aa	Known RBP	13.76	□□□□□ -0.21
NPIPB3-210	ENST00000542817	GNPAT	O15228	680 aa		13.75	□□□□□ -0.21
NPIPB3-210	ENST00000542817	BCAR3	O75815	825 aa		13.75	□□□□□ -0.21
NPIPB3-210	ENST00000542817	CANX	P27824	592 aa	Known RBP	13.75	□□□□□ -0.21
NPIPB3-210	ENST00000542817	IL6ST	P40189	918 aa	Predicted RBP	13.75	□□□□□ -0.21
NPIPB3-210	ENST00000542817	BRPF1	P55201	1214 aa	Predicted RBP	13.75	□□□□□ -0.21
NPIPB3-210	ENST00000542817	SLC15A2	Q16348	729 aa		13.75	□□□□□ -0.21
NPIPB3-210	ENST00000542817	CCDC30	Q5VVM6	783 aa		13.75	□□□□□ -0.21
NPIPB3-210	ENST00000542817	ZNF428	Q96B54	188 aa		13.75	□□□□□ -0.21
NPIPB3-210	ENST00000542817	PDGFD	Q9GZP0	370 aa	Predicted RBP	13.75	□□□□□ -0.21
NPIPB3-210	ENST00000542817	PHAX	Q9H814	394 aa	Known RBP	13.75	□□□□□ -0.21
NPIPB3-210	ENST00000542817	ALDH1L2	Q3SY69	923 aa		13.74	□□□□□ -0.21
NPIPB3-210	ENST00000542817	TTLL7	Q6ZT98	887 aa		13.74	□□□□□ -0.21
NPIPB3-210	ENST00000542817	PNPLA7	Q6ZV29	1317 aa		13.74	□□□□□ -0.21
NPIPB3-210	ENST00000542817	BCL2L13	Q9BXK5	485 aa		13.74	□□□□□ -0.21
NPIPB3-210	ENST00000542817	DBF4	Q9UBU7	674 aa	Predicted RBP	13.74	□□□□□ -0.21
NPIPB3-210	ENST00000542817	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	13.73	□□□□□ -0.21
NPIPB3-210	ENST00000542817	SLC4A2	P04920	1241 aa		13.73	□□□□□ -0.21
NPIPB3-210	ENST00000542817	MYL6B	P14649	208 aa		13.73	□□□□□ -0.21
NPIPB3-210	ENST00000542817	COL23A1	Q86Y22	540 aa	Predicted RBP	13.73	□□□□□ -0.21
NPIPB3-210	ENST00000542817	COL15A1	P39059	1388 aa		13.72	□□□□□ -0.21
NPIPB3-210	ENST00000542817	COPS6	Q7L5N1	327 aa		13.72	□□□□□ -0.21
NPIPB3-210	ENST00000542817	XAGE3	Q8WTP9	111 aa		13.72	□□□□□ -0.21
NPIPB3-210	ENST00000542817	ARHGEF1	Q92888	912 aa	Known RBP	13.72	□□□□□ -0.21
NPIPB3-210	ENST00000542817	AK7	Q96M32	723 aa		13.72	□□□□□ -0.21
NPIPB3-210	ENST00000542817	BCL2L12	Q9HB09	334 aa		13.72	□□□□□ -0.21
NPIPB3-210	ENST00000542817	QSER1	Q2KHR3	1735 aa		13.71	□□□□□ -0.21
NPIPB3-210	ENST00000542817	CAMTA2	O94983	1202 aa		13.71	□□□□□ -0.21
NPIPB3-210	ENST00000542817	SSFA2	P28290	1259 aa		13.71	□□□□□ -0.21
NPIPB3-210	ENST00000542817	HYPK	Q9NX55	129 aa		13.71	□□□□□ -0.21
NPIPB3-210	ENST00000542817	RTCB	Q9Y3I0	505 aa	Known RBP	13.71	□□□□□ -0.21
NPIPB3-210	ENST00000542817	C4A	P0C0L4	1744 aa		13.71	□□□□□ -0.22
NPIPB3-210	ENST00000542817	ADCY9	O60503	1353 aa		13.71	□□□□□ -0.22
NPIPB3-210	ENST00000542817	PHF14	O94880	888 aa		13.7	□□□□□ -0.22
NPIPB3-210	ENST00000542817	ADRA2B	P18089	450 aa		13.7	□□□□□ -0.22
NPIPB3-210	ENST00000542817	FLII	Q13045	1269 aa		13.7	□□□□□ -0.22
NPIPB3-210	ENST00000542817	STK32B	Q9NY57	414 aa		13.7	□□□□□ -0.22
NPIPB3-210	ENST00000542817	TFCP2L1	Q9NZI6	479 aa		13.7	□□□□□ -0.22
NPIPB3-210	ENST00000542817	SRP68	Q9UHB9	627 aa	Known RBP	13.7	□□□□□ -0.22
NPIPB3-210	ENST00000542817	RCAN3	Q9UKA8	241 aa		13.7	□□□□□ -0.22
NPIPB3-210	ENST00000542817	TBC1D2B	Q9UPU7	963 aa		13.7	□□□□□ -0.22
NPIPB3-210	ENST00000542817	TNN	Q9UQP3	1299 aa		13.7	□□□□□ -0.22
NPIPB3-210	ENST00000542817	USP42	Q9H9J4	1324 aa	Known RBP	13.69	□□□□□ -0.22
NPIPB3-210	ENST00000542817	HLF	Q16534	295 aa		13.69	□□□□□ -0.22
NPIPB3-210	ENST00000542817	SMC4	Q9NTJ3	1288 aa		13.69	□□□□□ -0.22
NPIPB3-210	ENST00000542817	NARF	Q9UHQ1	456 aa		13.69	□□□□□ -0.22
NPIPB3-210	ENST00000542817	CACNA1F	O60840	1977 aa		13.69	□□□□□ -0.22
NPIPB3-210	ENST00000542817	GOLGB1	Q14789	3259 aa	Known RBP	13.68	□□□□□ -0.22
NPIPB3-210	ENST00000542817	HMGB2	P26583	209 aa	Known RBP	13.68	□□□□□ -0.22
NPIPB3-210	ENST00000542817	AIMP1	Q12904	312 aa	Known RBP	13.68	□□□□□ -0.22
NPIPB3-210	ENST00000542817	TRAPPC3L	Q5T215	181 aa		13.68	□□□□□ -0.22
NPIPB3-210	ENST00000542817	STK31	Q9BXU1	1019 aa		13.68	□□□□□ -0.22
NPIPB3-210	ENST00000542817	CHMP4A	Q9BY43	222 aa		13.68	□□□□□ -0.22
NPIPB3-210	ENST00000542817	NOB1	Q9ULX3	412 aa	Known RBP	13.68	□□□□□ -0.22
NPIPB3-210	ENST00000542817	CASZ1	Q86V15	1759 aa		13.68	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms