RNA–Protein interactions for RNA: ENST00000541416.5

SNHG1-216, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 996 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-216ENST00000541416 LMNB1P20700 586 aa16.64■□□□□ 0.25
SNHG1-216ENST00000541416 PCGF6Q9BYE7 350 aa16.64■□□□□ 0.25
SNHG1-216ENST00000541416 COL15A1P39059 1388 aa16.64■□□□□ 0.25
SNHG1-216ENST00000541416 SBF1O95248 1867 aa16.63■□□□□ 0.25
SNHG1-216ENST00000541416 CYP19A1P11511 503 aaPredicted RBP16.63■□□□□ 0.25
SNHG1-216ENST00000541416 VSIG10Q8N0Z9 540 aa16.63■□□□□ 0.25
SNHG1-216ENST00000541416 H0YIN7 160 aa16.62■□□□□ 0.25
SNHG1-216ENST00000541416 RNMTO43148 476 aaKnown RBP16.62■□□□□ 0.25
SNHG1-216ENST00000541416 STARD3NLO95772 234 aa16.62■□□□□ 0.25
SNHG1-216ENST00000541416 VEGFAP15692 232 aaPredicted RBP16.62■□□□□ 0.25
SNHG1-216ENST00000541416 NFIXQ14938 502 aa16.62■□□□□ 0.25
SNHG1-216ENST00000541416 TTLL6Q8N841 843 aa16.62■□□□□ 0.25
SNHG1-216ENST00000541416 JMYQ8N9B5 988 aa16.62■□□□□ 0.25
SNHG1-216ENST00000541416 PCNTO95613 3336 aa16.62■□□□□ 0.25
SNHG1-216ENST00000541416 MRC1P22897 1456 aa16.61■□□□□ 0.25
SNHG1-216ENST00000541416 SERPINB2P05120 415 aa16.61■□□□□ 0.25
SNHG1-216ENST00000541416 TTC5Q8N0Z6 440 aa16.61■□□□□ 0.25
SNHG1-216ENST00000541416 LGR6Q9HBX8 967 aa16.61■□□□□ 0.25
SNHG1-216ENST00000541416 PDZRN3Q9UPQ7 1066 aa16.61■□□□□ 0.25
SNHG1-216ENST00000541416 ADAMTS7Q9UKP4 1686 aa16.61■□□□□ 0.25
SNHG1-216ENST00000541416 A0A087WZG4 1122 aa16.6■□□□□ 0.25
SNHG1-216ENST00000541416 GLTPD2A6NH11 291 aa16.6■□□□□ 0.25
SNHG1-216ENST00000541416 SLC39A6Q13433 755 aa16.6■□□□□ 0.25
SNHG1-216ENST00000541416 NPM2Q86SE8 214 aaKnown RBP16.6■□□□□ 0.25
SNHG1-216ENST00000541416 ZBTB1Q9Y2K1 713 aa16.6■□□□□ 0.25
SNHG1-216ENST00000541416 AFDNP55196 1824 aaKnown RBP16.6■□□□□ 0.25
SNHG1-216ENST00000541416 HMOX1P09601 288 aa16.59■□□□□ 0.25
SNHG1-216ENST00000541416 HTRA3P83110 453 aa16.59■□□□□ 0.25
SNHG1-216ENST00000541416 RASSF7Q02833 373 aa16.59■□□□□ 0.25
SNHG1-216ENST00000541416 C2CD5Q86YS7 1000 aa16.59■□□□□ 0.25
SNHG1-216ENST00000541416 DIAPH1O60610 1272 aaKnown RBP16.58■□□□□ 0.24
SNHG1-216ENST00000541416 DPY19L2Q6NUT2 758 aa16.58■□□□□ 0.24
SNHG1-216ENST00000541416 TEX13AQ9BXU3 409 aaPredicted RBP16.58■□□□□ 0.24
SNHG1-216ENST00000541416 NRXN2Q9P2S2 1712 aa16.58■□□□□ 0.24
SNHG1-216ENST00000541416 DLEC1Q9Y238 1755 aa16.58■□□□□ 0.24
SNHG1-216ENST00000541416 VIRMAQ69YN4 1812 aaKnown RBP16.58■□□□□ 0.24
SNHG1-216ENST00000541416 CANXP27824 592 aaKnown RBP16.57■□□□□ 0.24
SNHG1-216ENST00000541416 AMER1Q5JTC6 1135 aaPredicted RBP16.57■□□□□ 0.24
SNHG1-216ENST00000541416 PDE6BP35913 854 aa16.56■□□□□ 0.24
SNHG1-216ENST00000541416 TEFQ10587 303 aa16.56■□□□□ 0.24
SNHG1-216ENST00000541416 MTHFSDQ2M296 383 aaKnown RBP16.56■□□□□ 0.24
SNHG1-216ENST00000541416 NPHP1O15259 732 aa16.55■□□□□ 0.24
SNHG1-216ENST00000541416 BICDL1Q6ZP65 573 aa16.55■□□□□ 0.24
SNHG1-216ENST00000541416 TIAM2Q8IVF5 1701 aa16.54■□□□□ 0.24
SNHG1-216ENST00000541416 EIF5P55010 431 aaKnown RBP16.54■□□□□ 0.24
SNHG1-216ENST00000541416 COL13A1Q5TAT6 717 aaPredicted RBP16.54■□□□□ 0.24
SNHG1-216ENST00000541416 ZNF622Q969S3 477 aaKnown RBP eCLIP16.54■□□□□ 0.24
SNHG1-216ENST00000541416 BRIP1Q9BX63 1249 aa16.54■□□□□ 0.24
SNHG1-216ENST00000541416 BCL2L12Q9HB09 334 aa16.54■□□□□ 0.24
SNHG1-216ENST00000541416 CARMIL3Q8ND23 1372 aa16.53■□□□□ 0.24
SNHG1-216ENST00000541416 TNS4Q8IZW8 715 aa16.53■□□□□ 0.24
SNHG1-216ENST00000541416 GAS2L2Q8NHY3 880 aa16.53■□□□□ 0.24
SNHG1-216ENST00000541416 UBR2Q8IWV8 1755 aa16.53■□□□□ 0.24
SNHG1-216ENST00000541416 CCDC88AQ3V6T2 1871 aa16.52■□□□□ 0.24
SNHG1-216ENST00000541416 GNAT3A8MTJ3 354 aa16.52■□□□□ 0.24
SNHG1-216ENST00000541416 ZNF330Q9Y3S2 320 aaPredicted RBP16.52■□□□□ 0.24
SNHG1-216ENST00000541416 NFKBIEO00221 500 aa16.51■□□□□ 0.23
SNHG1-216ENST00000541416 IL6STP40189 918 aaPredicted RBP16.51■□□□□ 0.23
SNHG1-216ENST00000541416 ERFEQ4G0M1 354 aa16.51■□□□□ 0.23
SNHG1-216ENST00000541416 SOGA3Q5TF21 947 aa16.51■□□□□ 0.23
SNHG1-216ENST00000541416 ZNF790Q6PG37 636 aa16.51■□□□□ 0.23
SNHG1-216ENST00000541416 HEG1Q9ULI3 1381 aa16.51■□□□□ 0.23
SNHG1-216ENST00000541416 ST5P78524 1137 aa16.5■□□□□ 0.23
SNHG1-216ENST00000541416 TBC1D9BQ66K14 1250 aa16.5■□□□□ 0.23
SNHG1-216ENST00000541416 CNBD1Q8NA66 436 aa16.5■□□□□ 0.23
SNHG1-216ENST00000541416 CCER1Q8TC90 406 aaPredicted RBP16.5■□□□□ 0.23
SNHG1-216ENST00000541416 CNKSR1Q969H4 720 aa16.5■□□□□ 0.23
SNHG1-216ENST00000541416 FMNL2Q96PY5 1086 aa16.5■□□□□ 0.23
SNHG1-216ENST00000541416 SETDB2Q96T68 719 aa16.5■□□□□ 0.23
SNHG1-216ENST00000541416 U2SURPO15042 1029 aaKnown RBP16.49■□□□□ 0.23
SNHG1-216ENST00000541416 C21orf2O43822 256 aa16.49■□□□□ 0.23
SNHG1-216ENST00000541416 CC2D1BQ5T0F9 858 aaKnown RBP16.49■□□□□ 0.23
SNHG1-216ENST00000541416 ZNF496Q96IT1 587 aaPredicted RBP16.49■□□□□ 0.23
SNHG1-216ENST00000541416 TAOK3Q9H2K8 898 aa16.49■□□□□ 0.23
SNHG1-216ENST00000541416 TBC1D2BQ9UPU7 963 aa16.49■□□□□ 0.23
SNHG1-216ENST00000541416 SCN7AQ01118 1682 aa16.49■□□□□ 0.23
SNHG1-216ENST00000541416 KIF7Q2M1P5 1343 aa16.48■□□□□ 0.23
SNHG1-216ENST00000541416 LTBP3Q9NS15 1303 aa16.48■□□□□ 0.23
SNHG1-216ENST00000541416 HSPA1AP0DMV8 641 aaKnown RBP16.48■□□□□ 0.23
SNHG1-216ENST00000541416 HSPA1BP0DMV9 641 aaKnown RBP16.48■□□□□ 0.23
SNHG1-216ENST00000541416 PRELPP51888 382 aa16.48■□□□□ 0.23
SNHG1-216ENST00000541416 PRR5LQ6MZQ0 368 aa16.48■□□□□ 0.23
SNHG1-216ENST00000541416 DICER1Q9UPY3 1922 aaKnown RBP16.48■□□□□ 0.23
SNHG1-216ENST00000541416 CAPN15O75808 1086 aa16.47■□□□□ 0.23
SNHG1-216ENST00000541416 ZNF219Q9P2Y4 722 aaPredicted RBP16.47■□□□□ 0.23
SNHG1-216ENST00000541416 IQCA1LA6NCM1 817 aa16.46■□□□□ 0.23
SNHG1-216ENST00000541416 STYK1Q6J9G0 422 aa16.46■□□□□ 0.23
SNHG1-216ENST00000541416 CHADLQ6NUI6 762 aa16.46■□□□□ 0.23
SNHG1-216ENST00000541416 ZNF652Q9Y2D9 606 aa16.46■□□□□ 0.23
SNHG1-216ENST00000541416 FER1L6Q2WGJ9 1857 aa16.46■□□□□ 0.22
SNHG1-216ENST00000541416 ANKRD31Q8N7Z5 1873 aa16.46■□□□□ 0.22
SNHG1-216ENST00000541416 IL17REQ8NFR9 667 aa16.45■□□□□ 0.22
SNHG1-216ENST00000541416 MASTLQ96GX5 879 aa16.45■□□□□ 0.22
SNHG1-216ENST00000541416 CREBZFQ9NS37 354 aa16.45■□□□□ 0.22
SNHG1-216ENST00000541416 NPC1L1Q9UHC9 1359 aa16.44■□□□□ 0.22
SNHG1-216ENST00000541416 BTBD11A6QL63 1104 aa16.44■□□□□ 0.22
SNHG1-216ENST00000541416 POTECB2RU33 542 aa16.44■□□□□ 0.22
SNHG1-216ENST00000541416 PER1O15534 1290 aaPredicted RBP16.44■□□□□ 0.22
SNHG1-216ENST00000541416 PRPF40BQ6NWY9 871 aaKnown RBP16.44■□□□□ 0.22
SNHG1-216ENST00000541416 DZIP3Q86Y13 1208 aaKnown RBP16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 80.9 ms