RNA–Protein interactions for RNA: ENST00000541122.6

SMARCA4-207, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

APPRIS P4 TSL 5 BASIC

Gene SMARCA4, Length 5,139 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-207ENST00000541122 OGFRQ9NZT2 677 aa17.37■□□□□ 0.37
SMARCA4-207ENST00000541122 MRC2Q9UBG0 1479 aa17.37■□□□□ 0.37
SMARCA4-207ENST00000541122 ARFGAP3Q9NP61 516 aa17.37■□□□□ 0.37
SMARCA4-207ENST00000541122 SLU7O95391 586 aaKnown RBP17.36■□□□□ 0.37
SMARCA4-207ENST00000541122 UBAC1Q9BSL1 405 aa17.36■□□□□ 0.37
SMARCA4-207ENST00000541122 CNNM1Q9NRU3 951 aa17.36■□□□□ 0.37
SMARCA4-207ENST00000541122 GOLGA6L10A0A0M3HER8 536 aa17.36■□□□□ 0.37
SMARCA4-207ENST00000541122 NAA15Q9BXJ9 866 aaKnown RBP17.36■□□□□ 0.37
SMARCA4-207ENST00000541122 SLC52A1Q9NWF4 448 aa17.36■□□□□ 0.37
SMARCA4-207ENST00000541122 MAP2K1Q02750 393 aaPredicted RBP17.36■□□□□ 0.37
SMARCA4-207ENST00000541122 SOGA3Q5TF21 947 aa17.35■□□□□ 0.37
SMARCA4-207ENST00000541122 NUP133Q8WUM0 1156 aa17.35■□□□□ 0.37
SMARCA4-207ENST00000541122 EHBP1Q8NDI1 1231 aa17.35■□□□□ 0.37
SMARCA4-207ENST00000541122 CEP126Q9P2H0 1117 aa17.35■□□□□ 0.37
SMARCA4-207ENST00000541122 MAPKBP1O60336 1514 aa17.35■□□□□ 0.37
SMARCA4-207ENST00000541122 GTF2A1P52655 376 aaPredicted RBP17.35■□□□□ 0.37
SMARCA4-207ENST00000541122 RALGAPBQ86X10 1494 aa17.35■□□□□ 0.37
SMARCA4-207ENST00000541122 KIF20AO95235 890 aa17.35■□□□□ 0.37
SMARCA4-207ENST00000541122 LUZP1Q86V48 1076 aa17.35■□□□□ 0.37
SMARCA4-207ENST00000541122 DNAAF4Q8WXU2 420 aa17.35■□□□□ 0.37
SMARCA4-207ENST00000541122 RNF187Q5TA31 235 aaPredicted RBP17.35■□□□□ 0.37
SMARCA4-207ENST00000541122 AFAP1Q8N556 730 aa17.35■□□□□ 0.37
SMARCA4-207ENST00000541122 GBP2P32456 591 aaPredicted RBP17.34■□□□□ 0.37
SMARCA4-207ENST00000541122 HMG20BQ9P0W2 317 aa17.34■□□□□ 0.37
SMARCA4-207ENST00000541122 CCDC196A0A1B0GTZ2 297 aa17.34■□□□□ 0.37
SMARCA4-207ENST00000541122 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.34■□□□□ 0.371e-6■■■■■ 118.1
SMARCA4-207ENST00000541122 SKILP12757 684 aa17.34■□□□□ 0.37
SMARCA4-207ENST00000541122 ABTB2Q8N961 1025 aa17.34■□□□□ 0.37
SMARCA4-207ENST00000541122 BBXQ8WY36 941 aaPredicted RBP17.34■□□□□ 0.37
SMARCA4-207ENST00000541122 EVI5LQ96CN4 794 aa17.34■□□□□ 0.37
SMARCA4-207ENST00000541122 GNG11P61952 73 aa17.33■□□□□ 0.37
SMARCA4-207ENST00000541122 CCDC186Q7Z3E2 898 aa17.33■□□□□ 0.37
SMARCA4-207ENST00000541122 CNNM3Q8NE01 707 aa17.33■□□□□ 0.37
SMARCA4-207ENST00000541122 RAI14Q9P0K7 980 aa17.33■□□□□ 0.37
SMARCA4-207ENST00000541122 ABCC5O15440 1437 aa17.33■□□□□ 0.36
SMARCA4-207ENST00000541122 FGFR1OPO95684 399 aaKnown RBP17.33■□□□□ 0.36
SMARCA4-207ENST00000541122 PRIM1P49642 420 aaKnown RBP17.33■□□□□ 0.36
SMARCA4-207ENST00000541122 ZNF530Q6P9A1 599 aaPredicted RBP17.33■□□□□ 0.36
SMARCA4-207ENST00000541122 SMC1AQ14683 1233 aaKnown RBP17.33■□□□□ 0.36
SMARCA4-207ENST00000541122 SCAF11Q99590 1463 aaKnown RBP17.33■□□□□ 0.36
SMARCA4-207ENST00000541122 GIMAP6Q6P9H5 292 aa17.33■□□□□ 0.36
SMARCA4-207ENST00000541122 ALS2CR12Q96Q35 445 aa17.33■□□□□ 0.36
SMARCA4-207ENST00000541122 FKBP4Q02790 459 aaKnown RBP eCLIP17.32■□□□□ 0.36
SMARCA4-207ENST00000541122 CKAP4Q07065 602 aaKnown RBP17.32■□□□□ 0.36
SMARCA4-207ENST00000541122 KANK3Q6NY19 840 aa17.32■□□□□ 0.36
SMARCA4-207ENST00000541122 GPATCH11Q8N954 259 aa17.32■□□□□ 0.36
SMARCA4-207ENST00000541122 NUP88Q99567 741 aaPredicted RBP17.32■□□□□ 0.36
SMARCA4-207ENST00000541122 GCOM1H8Y6P7 765 aaPredicted RBP17.32■□□□□ 0.36
SMARCA4-207ENST00000541122 MYZAPP0CAP1 466 aa17.32■□□□□ 0.36
SMARCA4-207ENST00000541122 MNAT1P51948 309 aa17.32■□□□□ 0.36
SMARCA4-207ENST00000541122 USP48Q86UV5 1035 aa17.32■□□□□ 0.36
SMARCA4-207ENST00000541122 CCDC12Q8WUD4 166 aaPredicted RBP17.32■□□□□ 0.36
SMARCA4-207ENST00000541122 PYM1Q9BRP8 204 aaKnown RBP17.32■□□□□ 0.36
SMARCA4-207ENST00000541122 GNAT3A8MTJ3 354 aa17.31■□□□□ 0.36
SMARCA4-207ENST00000541122 TRHP20396 242 aaPredicted RBP17.31■□□□□ 0.36
SMARCA4-207ENST00000541122 GIGYF2Q6Y7W6 1299 aaKnown RBP17.31■□□□□ 0.36
SMARCA4-207ENST00000541122 RRAGDQ9NQL2 400 aaPredicted RBP17.31■□□□□ 0.36
SMARCA4-207ENST00000541122 CAMSAP2Q08AD1 1489 aa17.31■□□□□ 0.36
SMARCA4-207ENST00000541122 PCDHB15Q9Y5E8 787 aa17.31■□□□□ 0.36
SMARCA4-207ENST00000541122 CCDC175P0C221 793 aa17.31■□□□□ 0.36
SMARCA4-207ENST00000541122 IFFO1Q0D2I5 559 aa17.31■□□□□ 0.36
SMARCA4-207ENST00000541122 MTMR7Q9Y216 660 aa17.31■□□□□ 0.36
SMARCA4-207ENST00000541122 TATP17735 454 aaPredicted RBP17.3■□□□□ 0.36
SMARCA4-207ENST00000541122 VPS36Q86VN1 386 aa17.3■□□□□ 0.36
SMARCA4-207ENST00000541122 TDO2P48775 406 aa17.3■□□□□ 0.36
SMARCA4-207ENST00000541122 CCDC91Q7Z6B0 441 aa17.3■□□□□ 0.36
SMARCA4-207ENST00000541122 ZNF830Q96NB3 372 aaPredicted RBP17.3■□□□□ 0.36
SMARCA4-207ENST00000541122 PARD3Q8TEW0 1356 aa17.3■□□□□ 0.36
SMARCA4-207ENST00000541122 TUBBP07437 444 aa17.3■□□□□ 0.36
SMARCA4-207ENST00000541122 ANO6Q4KMQ2 910 aa17.3■□□□□ 0.36
SMARCA4-207ENST00000541122 ECHDC1Q9NTX5 307 aa17.3■□□□□ 0.36
SMARCA4-207ENST00000541122 TFIP11Q9UBB9 837 aaKnown RBP17.3■□□□□ 0.36
SMARCA4-207ENST00000541122 ANKRD62A6NC57 917 aa17.29■□□□□ 0.36
SMARCA4-207ENST00000541122 NUTM2GQ5VZR2 741 aa17.29■□□□□ 0.36
SMARCA4-207ENST00000541122 SPECC1LQ69YQ0 1117 aa17.29■□□□□ 0.36
SMARCA4-207ENST00000541122 KLHL10Q6JEL2 608 aa17.29■□□□□ 0.36
SMARCA4-207ENST00000541122 CEP112Q8N8E3 955 aa17.29■□□□□ 0.36
SMARCA4-207ENST00000541122 TSG101Q99816 390 aa17.29■□□□□ 0.36
SMARCA4-207ENST00000541122 V9GYY5 206 aaPredicted RBP17.29■□□□□ 0.36
SMARCA4-207ENST00000541122 INTS4Q96HW7 963 aaKnown RBP17.28■□□□□ 0.36
SMARCA4-207ENST00000541122 TTC12Q9H892 705 aaPredicted RBP17.28■□□□□ 0.36
SMARCA4-207ENST00000541122 AKAP2Q9Y2D5 859 aa17.28■□□□□ 0.36
SMARCA4-207ENST00000541122 BTBD11A6QL63 1104 aa17.28■□□□□ 0.36
SMARCA4-207ENST00000541122 CTAGE15A4D2H0 777 aa17.28■□□□□ 0.36
SMARCA4-207ENST00000541122 CTAGE8P0CG41 777 aa17.28■□□□□ 0.36
SMARCA4-207ENST00000541122 CACNA2D4Q7Z3S7 1137 aa17.28■□□□□ 0.36
SMARCA4-207ENST00000541122 CTAGE6Q86UF2 777 aa17.28■□□□□ 0.36
SMARCA4-207ENST00000541122 CTAGE4Q8IX94 777 aa17.28■□□□□ 0.36
SMARCA4-207ENST00000541122 THUMPD2Q9BTF0 503 aaKnown RBP17.28■□□□□ 0.36
SMARCA4-207ENST00000541122 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.28■□□□□ 0.36
SMARCA4-207ENST00000541122 F13A1P00488 732 aa17.27■□□□□ 0.36
SMARCA4-207ENST00000541122 STK11IPQ8N1F8 1099 aa17.27■□□□□ 0.36
SMARCA4-207ENST00000541122 SDSP20132 328 aa17.27■□□□□ 0.36
SMARCA4-207ENST00000541122 GABPB1Q06547 395 aaPredicted RBP17.27■□□□□ 0.36
SMARCA4-207ENST00000541122 SYTL4Q96C24 671 aaPredicted RBP17.27■□□□□ 0.36
SMARCA4-207ENST00000541122 ZHX3Q9H4I2 956 aa17.27■□□□□ 0.36
SMARCA4-207ENST00000541122 CNPY2Q9Y2B0 182 aa17.27■□□□□ 0.36
SMARCA4-207ENST00000541122 CETN2P41208 172 aa17.27■□□□□ 0.35
SMARCA4-207ENST00000541122 CCDC102BQ68D86 513 aa17.27■□□□□ 0.35
SMARCA4-207ENST00000541122 DNAI1Q9UI46 699 aa17.27■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms