RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 RPAP2Q8IXW5 612 aaPredicted RBP12.42□□□□□ -0.42
CLIP1-209ENST00000537178 DEPDC5O75140 1603 aa12.42□□□□□ -0.42
CLIP1-209ENST00000537178 KIAA1210Q9ULL0 1709 aa12.41□□□□□ -0.42
CLIP1-209ENST00000537178 MCM3P25205 808 aa12.41□□□□□ -0.42
CLIP1-209ENST00000537178 MVPQ14764 893 aaKnown RBP12.41□□□□□ -0.42
CLIP1-209ENST00000537178 ZSCAN30Q86W11 494 aa12.41□□□□□ -0.42
CLIP1-209ENST00000537178 ZSCAN29Q8IWY8 852 aaPredicted RBP12.41□□□□□ -0.42
CLIP1-209ENST00000537178 TSR2Q969E8 191 aaKnown RBP12.41□□□□□ -0.42
CLIP1-209ENST00000537178 ZNF692Q9BU19 519 aaPredicted RBP12.41□□□□□ -0.42
CLIP1-209ENST00000537178 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.41□□□□□ -0.42
CLIP1-209ENST00000537178 NEURL4Q96JN8 1562 aa12.41□□□□□ -0.42
CLIP1-209ENST00000537178 SPG7Q9UQ90 795 aa12.41□□□□□ -0.42
CLIP1-209ENST00000537178 MATR3P43243 847 aaKnown RBP eCLIP12.41□□□□□ -0.42
CLIP1-209ENST00000537178 RBM5P52756 815 aaKnown RBP eCLIP12.41□□□□□ -0.42
CLIP1-209ENST00000537178 DISP3Q9P2K9 1392 aa12.41□□□□□ -0.42
CLIP1-209ENST00000537178 STAMBPO95630 424 aa12.41□□□□□ -0.42
CLIP1-209ENST00000537178 GOLGA6L10A0A0M3HER8 536 aa12.4□□□□□ -0.42
CLIP1-209ENST00000537178 PTPN14Q15678 1187 aa12.4□□□□□ -0.42
CLIP1-209ENST00000537178 TRMT2AQ8IZ69 625 aaKnown RBP12.4□□□□□ -0.42
CLIP1-209ENST00000537178 ZNF287Q9HBT7 754 aa12.4□□□□□ -0.42
CLIP1-209ENST00000537178 RAI14Q9P0K7 980 aa12.4□□□□□ -0.42
CLIP1-209ENST00000537178 SYNMO15061 1565 aa12.4□□□□□ -0.42
CLIP1-209ENST00000537178 ANAPC15P60006 121 aa12.4□□□□□ -0.42
CLIP1-209ENST00000537178 FKBP15Q5T1M5 1219 aa12.4□□□□□ -0.42
CLIP1-209ENST00000537178 STRN4Q9NRL3 753 aa12.4□□□□□ -0.42
CLIP1-209ENST00000537178 CFAP70Q5T0N1 1121 aa12.4□□□□□ -0.43
CLIP1-209ENST00000537178 GIMAP7Q8NHV1 300 aa12.4□□□□□ -0.43
CLIP1-209ENST00000537178 LRP2BPQ9P2M1 347 aa12.4□□□□□ -0.43
CLIP1-209ENST00000537178 KIF5CO60282 957 aa12.39□□□□□ -0.43
CLIP1-209ENST00000537178 PROSER2Q86WR7 435 aaPredicted RBP12.39□□□□□ -0.43
CLIP1-209ENST00000537178 KIF18AQ8NI77 898 aa12.39□□□□□ -0.43
CLIP1-209ENST00000537178 TTC37Q6PGP7 1564 aa12.39□□□□□ -0.43
CLIP1-209ENST00000537178 SHROOM2Q13796 1616 aa12.39□□□□□ -0.43
CLIP1-209ENST00000537178 BCAR3O75815 825 aa12.39□□□□□ -0.43
CLIP1-209ENST00000537178 SMC1AQ14683 1233 aaKnown RBP12.39□□□□□ -0.43
CLIP1-209ENST00000537178 CWC27Q6UX04 472 aaKnown RBP12.39□□□□□ -0.43
CLIP1-209ENST00000537178 ANO10Q9NW15 660 aa12.39□□□□□ -0.43
CLIP1-209ENST00000537178 GSTTP1A0A1W2PQM5 241 aa12.39□□□□□ -0.43
CLIP1-209ENST00000537178 TNIP1Q15025 636 aa12.39□□□□□ -0.43
CLIP1-209ENST00000537178 LUZP1Q86V48 1076 aa12.39□□□□□ -0.43
CLIP1-209ENST00000537178 SCAND2PQ9GZW5 306 aaPredicted RBP12.39□□□□□ -0.43
CLIP1-209ENST00000537178 TMOD2Q9NZR1 351 aa12.39□□□□□ -0.43
CLIP1-209ENST00000537178 DHX37Q8IY37 1157 aaKnown RBP12.38□□□□□ -0.43
CLIP1-209ENST00000537178 USP19O94966 1318 aa12.38□□□□□ -0.43
CLIP1-209ENST00000537178 MAP4K4O95819 1239 aaPredicted RBP12.38□□□□□ -0.43
CLIP1-209ENST00000537178 HMGB2P26583 209 aaKnown RBP12.38□□□□□ -0.43
CLIP1-209ENST00000537178 PAFAH1B1P43034 410 aa12.38□□□□□ -0.43
CLIP1-209ENST00000537178 KIF4BQ2VIQ3 1234 aa12.38□□□□□ -0.43
CLIP1-209ENST00000537178 AIDAQ96BJ3 306 aa12.38□□□□□ -0.43
CLIP1-209ENST00000537178 ERICH4A6NGS2 130 aa12.38□□□□□ -0.43
CLIP1-209ENST00000537178 CCDC113Q9H0I3 377 aa12.38□□□□□ -0.43
CLIP1-209ENST00000537178 U3KPZ7 1027 aaPredicted RBP12.38□□□□□ -0.43
CLIP1-209ENST00000537178 CCDC196A0A1B0GTZ2 297 aa12.38□□□□□ -0.43
CLIP1-209ENST00000537178 CACNA2D4Q7Z3S7 1137 aa12.38□□□□□ -0.43
CLIP1-209ENST00000537178 HOOK3Q86VS8 718 aa12.38□□□□□ -0.43
CLIP1-209ENST00000537178 TSG101Q99816 390 aa12.38□□□□□ -0.43
CLIP1-209ENST00000537178 PLEKHH1Q9ULM0 1364 aa12.37□□□□□ -0.43
CLIP1-209ENST00000537178 FGFR1OPO95684 399 aaKnown RBP12.37□□□□□ -0.43
CLIP1-209ENST00000537178 TOM1L2Q6ZVM7 507 aa12.37□□□□□ -0.43
CLIP1-209ENST00000537178 TXNDC2Q86VQ3 553 aa12.37□□□□□ -0.43
CLIP1-209ENST00000537178 CCDC83Q8IWF9 413 aa12.37□□□□□ -0.43
CLIP1-209ENST00000537178 MYO3AQ8NEV4 1616 aa12.37□□□□□ -0.43
CLIP1-209ENST00000537178 IDH1O75874 414 aaKnown RBP12.37□□□□□ -0.43
CLIP1-209ENST00000537178 KIF20AO95235 890 aa12.37□□□□□ -0.43
CLIP1-209ENST00000537178 USP5P45974 858 aa12.37□□□□□ -0.43
CLIP1-209ENST00000537178 FAM69CQ0P6D2 419 aa12.37□□□□□ -0.43
CLIP1-209ENST00000537178 SF3B2Q13435 895 aaKnown RBP12.37□□□□□ -0.43
CLIP1-209ENST00000537178 SKAP1Q86WV1 359 aa12.37□□□□□ -0.43
CLIP1-209ENST00000537178 OSCARQ8IYS5 282 aa12.37□□□□□ -0.43
CLIP1-209ENST00000537178 IFFO1Q0D2I5 559 aa12.37□□□□□ -0.43
CLIP1-209ENST00000537178 PHAXQ9H814 394 aaKnown RBP12.37□□□□□ -0.43
CLIP1-209ENST00000537178 IGHMBP2P38935 993 aaKnown RBP12.37□□□□□ -0.43
CLIP1-209ENST00000537178 RAB34Q9BZG1 259 aa12.37□□□□□ -0.43
CLIP1-209ENST00000537178 GCOM1H8Y6P7 765 aaPredicted RBP12.36□□□□□ -0.43
CLIP1-209ENST00000537178 MYZAPP0CAP1 466 aa12.36□□□□□ -0.43
CLIP1-209ENST00000537178 DDX54Q8TDD1 881 aaKnown RBP12.36□□□□□ -0.43
CLIP1-209ENST00000537178 FAM107BQ9H098 131 aa12.36□□□□□ -0.43
CLIP1-209ENST00000537178 IL1RAPL2Q9NP60 686 aa12.36□□□□□ -0.43
CLIP1-209ENST00000537178 PPP1R1BQ9UD71 204 aaPredicted RBP12.36□□□□□ -0.43
CLIP1-209ENST00000537178 ZC3H13Q5T200 1668 aaKnown RBP12.36□□□□□ -0.43
CLIP1-209ENST00000537178 USO1O60763 962 aaKnown RBP12.36□□□□□ -0.43
CLIP1-209ENST00000537178 MYL6BP14649 208 aa12.36□□□□□ -0.43
CLIP1-209ENST00000537178 C8orf34Q49A92 452 aa12.36□□□□□ -0.43
CLIP1-209ENST00000537178 VWDEQ8N2E2 1590 aa12.36□□□□□ -0.43
CLIP1-209ENST00000537178 DDX11Q96FC9 970 aa12.36□□□□□ -0.43
CLIP1-209ENST00000537178 NF2P35240 595 aa12.36□□□□□ -0.43
CLIP1-209ENST00000537178 MICALCLQ6ZW33 695 aa12.36□□□□□ -0.43
CLIP1-209ENST00000537178 PRAM1Q96QH2 718 aa12.36□□□□□ -0.43
CLIP1-209ENST00000537178 SEC63Q9UGP8 760 aaKnown RBP12.36□□□□□ -0.43
CLIP1-209ENST00000537178 URI1O94763 535 aaPredicted RBP12.36□□□□□ -0.43
CLIP1-209ENST00000537178 GLRX3O76003 335 aaKnown RBP12.35□□□□□ -0.43
CLIP1-209ENST00000537178 TOP1P11387 765 aaKnown RBP12.35□□□□□ -0.43
CLIP1-209ENST00000537178 CASTP20810 708 aaKnown RBP12.35□□□□□ -0.43
CLIP1-209ENST00000537178 PPP4R3AQ6IN85 833 aa12.35□□□□□ -0.43
CLIP1-209ENST00000537178 SYCE3A1L190 88 aa12.35□□□□□ -0.43
CLIP1-209ENST00000537178 FERMT3Q86UX7 667 aa12.35□□□□□ -0.43
CLIP1-209ENST00000537178 SPECC1Q5M775 1068 aa12.34□□□□□ -0.43
CLIP1-209ENST00000537178 PPM1EQ8WY54 764 aa12.34□□□□□ -0.43
CLIP1-209ENST00000537178 KIF1BPQ96EK5 621 aa12.34□□□□□ -0.43
CLIP1-209ENST00000537178 DUOX2Q9NRD8 1548 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 152.7 ms