RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 GCP02774 474 aa9.93□□□□□ -0.82
CD44-228ENST00000528455 MTHFSP49914 203 aa9.93□□□□□ -0.82
CD44-228ENST00000528455 ANKRD13DQ6ZTN6 518 aa9.93□□□□□ -0.82
CD44-228ENST00000528455 RBM46Q8TBY0 533 aaKnown RBP9.93□□□□□ -0.82
CD44-228ENST00000528455 RGS12O14924 1447 aa9.92□□□□□ -0.82
CD44-228ENST00000528455 POLKQ9UBT6 870 aa9.92□□□□□ -0.82
CD44-228ENST00000528455 SLIT2O94813 1529 aa9.92□□□□□ -0.82
CD44-228ENST00000528455 OVOS2A0A0J9YW53 1432 aa9.91□□□□□ -0.82
CD44-228ENST00000528455 OVOS2Q6IE36 1432 aa9.91□□□□□ -0.82
CD44-228ENST00000528455 USP54Q70EL1 1684 aa9.91□□□□□ -0.82
CD44-228ENST00000528455 ALS2Q96Q42 1657 aa9.91□□□□□ -0.82
CD44-228ENST00000528455 FAM83GA6ND36 823 aa9.91□□□□□ -0.82
CD44-228ENST00000528455 HRO43593 1189 aa9.91□□□□□ -0.82
CD44-228ENST00000528455 TNNT2P45379 298 aaPredicted RBP9.91□□□□□ -0.82
CD44-228ENST00000528455 AMHR2Q16671 573 aa9.91□□□□□ -0.82
CD44-228ENST00000528455 NUTM2GQ5VZR2 741 aa9.91□□□□□ -0.82
CD44-228ENST00000528455 INSRP06213 1382 aa9.9□□□□□ -0.82
CD44-228ENST00000528455 KIF24Q5T7B8 1368 aa9.9□□□□□ -0.82
CD44-228ENST00000528455 PIK3C2AO00443 1686 aa9.9□□□□□ -0.82
CD44-228ENST00000528455 USP19O94966 1318 aa9.9□□□□□ -0.82
CD44-228ENST00000528455 FBLN1P23142 703 aa9.9□□□□□ -0.82
CD44-228ENST00000528455 PDE4DQ08499 809 aa9.9□□□□□ -0.82
CD44-228ENST00000528455 CFAP53Q96M91 514 aa9.9□□□□□ -0.82
CD44-228ENST00000528455 SEPT9Q9UHD8 586 aaPredicted RBP9.9□□□□□ -0.82
CD44-228ENST00000528455 VPS72Q15906 364 aa9.89□□□□□ -0.83
CD44-228ENST00000528455 ARHGEF25Q86VW2 580 aa9.89□□□□□ -0.83
CD44-228ENST00000528455 PNISRQ8TF01 805 aaKnown RBP9.89□□□□□ -0.83
CD44-228ENST00000528455 MRS2Q9HD23 443 aa9.89□□□□□ -0.83
CD44-228ENST00000528455 CCDC9Q9Y3X0 531 aaKnown RBP9.89□□□□□ -0.83
CD44-228ENST00000528455 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.89□□□□□ -0.83
CD44-228ENST00000528455 RCCD1A6NED2 376 aa9.88□□□□□ -0.83
CD44-228ENST00000528455 CCDC184Q52MB2 194 aa9.88□□□□□ -0.83
CD44-228ENST00000528455 NLRP7Q8WX94 980 aa9.88□□□□□ -0.83
CD44-228ENST00000528455 IP6K1Q92551 441 aa9.88□□□□□ -0.83
CD44-228ENST00000528455 NBPF3Q9H094 633 aa9.88□□□□□ -0.83
CD44-228ENST00000528455 BTG4Q9NY30 223 aa9.88□□□□□ -0.83
CD44-228ENST00000528455 NWD2Q9ULI1 1742 aa9.87□□□□□ -0.83
CD44-228ENST00000528455 AMPHP49418 695 aa9.87□□□□□ -0.83
CD44-228ENST00000528455 BRPF1P55201 1214 aaPredicted RBP9.87□□□□□ -0.83
CD44-228ENST00000528455 RRS1Q15050 365 aaKnown RBP9.87□□□□□ -0.83
CD44-228ENST00000528455 TMUB1Q9BVT8 246 aa9.87□□□□□ -0.83
CD44-228ENST00000528455 PRDM11Q9NQV5 511 aa9.87□□□□□ -0.83
CD44-228ENST00000528455 NUDCQ9Y266 331 aa9.87□□□□□ -0.83
CD44-228ENST00000528455 ABCA3Q99758 1704 aa9.87□□□□□ -0.83
CD44-228ENST00000528455 SLIT3O75094 1523 aa9.87□□□□□ -0.83
CD44-228ENST00000528455 MAP3K19Q56UN5 1328 aa9.86□□□□□ -0.83
CD44-228ENST00000528455 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.86□□□□□ -0.83
CD44-228ENST00000528455 PPM1GO15355 546 aaPredicted RBP9.86□□□□□ -0.83
CD44-228ENST00000528455 DIAPH1O60610 1272 aaKnown RBP9.86□□□□□ -0.83
CD44-228ENST00000528455 FAM98CQ17RN3 349 aaKnown RBP9.86□□□□□ -0.83
CD44-228ENST00000528455 LAPTM4BQ86VI4 370 aa9.86□□□□□ -0.83
CD44-228ENST00000528455 REPIN1Q9BWE0 567 aaKnown RBP9.86□□□□□ -0.83
CD44-228ENST00000528455 EMILIN1Q9Y6C2 1016 aa9.86□□□□□ -0.83
CD44-228ENST00000528455 PLCH1Q4KWH8 1693 aa9.86□□□□□ -0.83
CD44-228ENST00000528455 CPDO75976 1380 aa9.86□□□□□ -0.83
CD44-228ENST00000528455 DNAJB2P25686 324 aa9.85□□□□□ -0.83
CD44-228ENST00000528455 ZC3H6P61129 1189 aaKnown RBP9.85□□□□□ -0.83
CD44-228ENST00000528455 MDM2Q00987 491 aaPredicted RBP9.85□□□□□ -0.83
CD44-228ENST00000528455 CCDC125Q86Z20 511 aa9.85□□□□□ -0.83
CD44-228ENST00000528455 PARP9Q8IXQ6 854 aa9.85□□□□□ -0.83
CD44-228ENST00000528455 SEPT12Q8IYM1 358 aa9.85□□□□□ -0.83
CD44-228ENST00000528455 COL14A1Q05707 1796 aaKnown RBP9.85□□□□□ -0.83
CD44-228ENST00000528455 EP400Q96L91 3159 aa9.85□□□□□ -0.83
CD44-228ENST00000528455 GLI3P10071 1580 aa9.84□□□□□ -0.83
CD44-228ENST00000528455 SMG6Q86US8 1419 aaKnown RBP9.84□□□□□ -0.83
CD44-228ENST00000528455 A0A0G2JS52 829 aa9.84□□□□□ -0.83
CD44-228ENST00000528455 HOXC9P31274 260 aa9.84□□□□□ -0.83
CD44-228ENST00000528455 IL13P35225 146 aa9.84□□□□□ -0.83
CD44-228ENST00000528455 MYT1Q01538 1121 aa9.84□□□□□ -0.83
CD44-228ENST00000528455 NEUROD2Q15784 382 aa9.84□□□□□ -0.83
CD44-228ENST00000528455 HSP90AB2PQ58FF8 381 aa9.84□□□□□ -0.83
CD44-228ENST00000528455 MRPL50Q8N5N7 158 aaKnown RBP9.84□□□□□ -0.83
CD44-228ENST00000528455 PNNQ9H307 717 aaKnown RBP9.84□□□□□ -0.83
CD44-228ENST00000528455 TMEM134Q9H6X4 195 aa9.84□□□□□ -0.83
CD44-228ENST00000528455 KIAA0232Q92628 1395 aa9.84□□□□□ -0.83
CD44-228ENST00000528455 NFAT5O94916 1531 aa9.83□□□□□ -0.84
CD44-228ENST00000528455 CLCN1P35523 988 aa9.83□□□□□ -0.84
CD44-228ENST00000528455 EVA1CP58658 441 aa9.83□□□□□ -0.84
CD44-228ENST00000528455 TTLL12Q14166 644 aaPredicted RBP9.83□□□□□ -0.84
CD44-228ENST00000528455 WDR43Q15061 677 aaKnown RBP eCLIP9.83□□□□□ -0.84
CD44-228ENST00000528455 CHRNA2Q15822 529 aa9.83□□□□□ -0.84
CD44-228ENST00000528455 GPBP1L1Q9HC44 474 aaPredicted RBP9.83□□□□□ -0.84
CD44-228ENST00000528455 PCDH10Q9P2E7 1040 aa9.83□□□□□ -0.84
CD44-228ENST00000528455 ADAMTS8Q9UP79 889 aa9.83□□□□□ -0.84
CD44-228ENST00000528455 FLT4P35916 1363 aa9.83□□□□□ -0.84
CD44-228ENST00000528455 PHRF1Q9P1Y6 1649 aaKnown RBP9.82□□□□□ -0.84
CD44-228ENST00000528455 CRYBG1Q9Y4K1 1723 aa9.82□□□□□ -0.84
CD44-228ENST00000528455 KRT27Q7Z3Y8 459 aa9.82□□□□□ -0.84
CD44-228ENST00000528455 FAM9BQ8IZU0 186 aa9.82□□□□□ -0.84
CD44-228ENST00000528455 ZFRQ96KR1 1074 aaKnown RBP9.82□□□□□ -0.84
CD44-228ENST00000528455 GPCPD1Q9NPB8 672 aa9.82□□□□□ -0.84
CD44-228ENST00000528455 STRN4Q9NRL3 753 aa9.82□□□□□ -0.84
CD44-228ENST00000528455 RTL1A6NKG5 1358 aa9.82□□□□□ -0.84
CD44-228ENST00000528455 LTN1O94822 1766 aa9.82□□□□□ -0.84
CD44-228ENST00000528455 SPATA31A5Q5VU36 1347 aa9.82□□□□□ -0.84
CD44-228ENST00000528455 SPATA31A7Q8IWB4 1347 aa9.82□□□□□ -0.84
CD44-228ENST00000528455 EIF4A2Q14240 407 aaKnown RBP9.81□□□□□ -0.84
CD44-228ENST00000528455 DAXXQ9UER7 740 aaPredicted RBP9.81□□□□□ -0.84
CD44-228ENST00000528455 BLMP54132 1417 aaPredicted RBP9.81□□□□□ -0.84
CD44-228ENST00000528455 COL18A1P39060 1754 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms