RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 RNMTO43148 476 aaKnown RBP19.53■□□□□ 0.72
CPSF1-201ENST00000526271 HMOX1P09601 288 aa19.53■□□□□ 0.72
CPSF1-201ENST00000526271 MTHFSDQ2M296 383 aaKnown RBP19.53■□□□□ 0.72
CPSF1-201ENST00000526271 AKAP4Q5JQC9 854 aa19.53■□□□□ 0.72
CPSF1-201ENST00000526271 USPL1Q5W0Q7 1092 aa19.53■□□□□ 0.72
CPSF1-201ENST00000526271 ZBTB1Q9Y2K1 713 aa19.53■□□□□ 0.72
CPSF1-201ENST00000526271 ANKRD31Q8N7Z5 1873 aa19.53■□□□□ 0.72
CPSF1-201ENST00000526271 CCDC88AQ3V6T2 1871 aa19.52■□□□□ 0.72
CPSF1-201ENST00000526271 PCNTO95613 3336 aa19.52■□□□□ 0.72
CPSF1-201ENST00000526271 TOMM70O94826 608 aa19.52■□□□□ 0.72
CPSF1-201ENST00000526271 CARMIL3Q8ND23 1372 aa19.52■□□□□ 0.72
CPSF1-201ENST00000526271 HTRA3P83110 453 aa19.51■□□□□ 0.71
CPSF1-201ENST00000526271 NFIXQ14938 502 aa19.51■□□□□ 0.71
CPSF1-201ENST00000526271 PIM2Q9P1W9 311 aa19.51■□□□□ 0.71
CPSF1-201ENST00000526271 KNSTRNQ9Y448 316 aa19.5■□□□□ 0.71
CPSF1-201ENST00000526271 COL15A1P39059 1388 aa19.49■□□□□ 0.71
CPSF1-201ENST00000526271 COL11A2P13942 1736 aaPredicted RBP19.48■□□□□ 0.71
CPSF1-201ENST00000526271 RASSF7Q02833 373 aa19.48■□□□□ 0.71
CPSF1-201ENST00000526271 DALRD3Q5D0E6 543 aaKnown RBP19.48■□□□□ 0.71
CPSF1-201ENST00000526271 NARFQ9UHQ1 456 aa19.48■□□□□ 0.71
CPSF1-201ENST00000526271 TNRC6CQ9HCJ0 1690 aaKnown RBP19.48■□□□□ 0.71
CPSF1-201ENST00000526271 SCN7AQ01118 1682 aa19.46■□□□□ 0.71
CPSF1-201ENST00000526271 APLP1P51693 650 aa19.46■□□□□ 0.71
CPSF1-201ENST00000526271 RNF181Q9P0P0 153 aa19.46■□□□□ 0.71
CPSF1-201ENST00000526271 TIAM2Q8IVF5 1701 aa19.45■□□□□ 0.7
CPSF1-201ENST00000526271 RBM46Q8TBY0 533 aaKnown RBP19.45■□□□□ 0.7
CPSF1-201ENST00000526271 CC2D1BQ5T0F9 858 aaKnown RBP19.44■□□□□ 0.7
CPSF1-201ENST00000526271 IL17REQ8NFR9 667 aa19.44■□□□□ 0.7
CPSF1-201ENST00000526271 EIF5P55010 431 aaKnown RBP19.43■□□□□ 0.7
CPSF1-201ENST00000526271 ZPR1O75312 459 aa19.42■□□□□ 0.7
CPSF1-201ENST00000526271 SERPINB2P05120 415 aa19.42■□□□□ 0.7
CPSF1-201ENST00000526271 VSIG10Q8N0Z9 540 aa19.42■□□□□ 0.7
CPSF1-201ENST00000526271 RRAGCQ9HB90 399 aa19.42■□□□□ 0.7
CPSF1-201ENST00000526271 FER1L6Q2WGJ9 1857 aa19.41■□□□□ 0.7
CPSF1-201ENST00000526271 NFKBIEO00221 500 aa19.41■□□□□ 0.7
CPSF1-201ENST00000526271 DIAPH1O60610 1272 aaKnown RBP19.41■□□□□ 0.7
CPSF1-201ENST00000526271 ZNF496Q96IT1 587 aaPredicted RBP19.41■□□□□ 0.7
CPSF1-201ENST00000526271 CANXP27824 592 aaKnown RBP19.4■□□□□ 0.7
CPSF1-201ENST00000526271 BCORQ6W2J9 1755 aa19.39■□□□□ 0.7
CPSF1-201ENST00000526271 DICER1Q9UPY3 1922 aaKnown RBP19.39■□□□□ 0.7
CPSF1-201ENST00000526271 POTECB2RU33 542 aa19.39■□□□□ 0.69
CPSF1-201ENST00000526271 KCNQ3O43525 872 aa19.39■□□□□ 0.69
CPSF1-201ENST00000526271 TBC1D9BQ66K14 1250 aa19.39■□□□□ 0.69
CPSF1-201ENST00000526271 CCDC24Q8N4L8 307 aa19.39■□□□□ 0.69
CPSF1-201ENST00000526271 CACNA1SQ13698 1873 aa19.38■□□□□ 0.69
CPSF1-201ENST00000526271 CCER1Q8TC90 406 aaPredicted RBP19.38■□□□□ 0.69
CPSF1-201ENST00000526271 HEG1Q9ULI3 1381 aa19.38■□□□□ 0.69
CPSF1-201ENST00000526271 SLX4Q8IY92 1834 aa19.37■□□□□ 0.69
CPSF1-201ENST00000526271 JMYQ8N9B5 988 aa19.37■□□□□ 0.69
CPSF1-201ENST00000526271 KLRG1Q96E93 195 aa19.37■□□□□ 0.69
CPSF1-201ENST00000526271 CEMIPQ8WUJ3 1361 aa19.36■□□□□ 0.69
CPSF1-201ENST00000526271 NPC1L1Q9UHC9 1359 aa19.36■□□□□ 0.69
CPSF1-201ENST00000526271 FSTL1Q12841 308 aa19.36■□□□□ 0.69
CPSF1-201ENST00000526271 BICDL1Q6ZP65 573 aa19.36■□□□□ 0.69
CPSF1-201ENST00000526271 C2CD5Q86YS7 1000 aa19.36■□□□□ 0.69
CPSF1-201ENST00000526271 PHACTR3Q96KR7 559 aa19.36■□□□□ 0.69
CPSF1-201ENST00000526271 KDM2BQ8NHM5 1336 aa19.35■□□□□ 0.69
CPSF1-201ENST00000526271 ZNF790Q6PG37 636 aa19.35■□□□□ 0.69
CPSF1-201ENST00000526271 ARFGEF2Q9Y6D5 1785 aa19.34■□□□□ 0.69
CPSF1-201ENST00000526271 PRAMEF22A3QJZ6 481 aa19.34■□□□□ 0.69
CPSF1-201ENST00000526271 A1BGP04217 495 aa19.34■□□□□ 0.69
CPSF1-201ENST00000526271 PRR5LQ6MZQ0 368 aa19.34■□□□□ 0.69
CPSF1-201ENST00000526271 TTLL6Q8N841 843 aa19.34■□□□□ 0.69
CPSF1-201ENST00000526271 TBC1D2BQ9UPU7 963 aa19.34■□□□□ 0.69
CPSF1-201ENST00000526271 LMNB1P20700 586 aa19.33■□□□□ 0.68
CPSF1-201ENST00000526271 ZC3H4Q9UPT8 1303 aaKnown RBP19.32■□□□□ 0.68
CPSF1-201ENST00000526271 GLTPD2A6NH11 291 aa19.32■□□□□ 0.68
CPSF1-201ENST00000526271 CAMTA2O94983 1202 aa19.32■□□□□ 0.68
CPSF1-201ENST00000526271 CNGB1Q14028 1251 aaPredicted RBP19.32■□□□□ 0.68
CPSF1-201ENST00000526271 PIP4K2AP48426 406 aaPredicted RBP19.31■□□□□ 0.68
CPSF1-201ENST00000526271 COL13A1Q5TAT6 717 aaPredicted RBP19.31■□□□□ 0.68
CPSF1-201ENST00000526271 RSPH6AQ9H0K4 717 aa19.31■□□□□ 0.68
CPSF1-201ENST00000526271 GNAT3A8MTJ3 354 aa19.3■□□□□ 0.68
CPSF1-201ENST00000526271 U2SURPO15042 1029 aaKnown RBP19.3■□□□□ 0.68
CPSF1-201ENST00000526271 H0YIN7 160 aa19.29■□□□□ 0.68
CPSF1-201ENST00000526271 STARD3NLO95772 234 aa19.29■□□□□ 0.68
CPSF1-201ENST00000526271 IL6STP40189 918 aaPredicted RBP19.29■□□□□ 0.68
CPSF1-201ENST00000526271 C16orf71Q8IYS4 520 aaPredicted RBP19.29■□□□□ 0.68
CPSF1-201ENST00000526271 TTC5Q8N0Z6 440 aa19.29■□□□□ 0.68
CPSF1-201ENST00000526271 USP16Q9Y5T5 823 aa19.29■□□□□ 0.68
CPSF1-201ENST00000526271 C21orf2O43822 256 aa19.28■□□□□ 0.68
CPSF1-201ENST00000526271 SMC1BQ8NDV3 1235 aa19.28■□□□□ 0.68
CPSF1-201ENST00000526271 BRIP1Q9BX63 1249 aa19.28■□□□□ 0.68
CPSF1-201ENST00000526271 PRKAR2BP31323 418 aa19.27■□□□□ 0.68
CPSF1-201ENST00000526271 GAS2L2Q8NHY3 880 aa19.27■□□□□ 0.68
CPSF1-201ENST00000526271 ZNF219Q9P2Y4 722 aaPredicted RBP19.27■□□□□ 0.68
CPSF1-201ENST00000526271 A0A087WZG4 1122 aa19.26■□□□□ 0.67
CPSF1-201ENST00000526271 VEGFAP15692 232 aaPredicted RBP19.26■□□□□ 0.67
CPSF1-201ENST00000526271 TEFQ10587 303 aa19.26■□□□□ 0.67
CPSF1-201ENST00000526271 POTEIP0CG38 1075 aa19.25■□□□□ 0.67
CPSF1-201ENST00000526271 POTEJP0CG39 1038 aa19.25■□□□□ 0.67
CPSF1-201ENST00000526271 ZNF622Q969S3 477 aaKnown RBP eCLIP19.25■□□□□ 0.67
CPSF1-201ENST00000526271 FMNL2Q96PY5 1086 aa19.25■□□□□ 0.67
CPSF1-201ENST00000526271 ZNF330Q9Y3S2 320 aaPredicted RBP19.25■□□□□ 0.67
CPSF1-201ENST00000526271 NBPF26B4DH59 902 aa19.24■□□□□ 0.67
CPSF1-201ENST00000526271 NBPF10Q6P3W6 841 aaKnown RBP19.24■□□□□ 0.67
CPSF1-201ENST00000526271 NBPF15Q8N660 670 aa19.24■□□□□ 0.67
CPSF1-201ENST00000526271 C7orf43Q8WVR3 580 aa19.24■□□□□ 0.67
CPSF1-201ENST00000526271 DLG5Q8TDM6 1919 aa19.23■□□□□ 0.67
CPSF1-201ENST00000526271 SRGNP10124 158 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms