RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 POTEAQ6S8J7 498 aa8.34□□□□□ -1.07
CD44-215ENST00000525241 CABP1Q9NZU7 370 aa8.34□□□□□ -1.07
CD44-215ENST00000525241 PPP1R12BO60237 982 aaPredicted RBP8.33□□□□□ -1.08
CD44-215ENST00000525241 PSMA6P60900 246 aaKnown RBP8.33□□□□□ -1.08
CD44-215ENST00000525241 STAG2Q8N3U4 1231 aa8.33□□□□□ -1.08
CD44-215ENST00000525241 PARP3Q9Y6F1 533 aa8.33□□□□□ -1.08
CD44-215ENST00000525241 SLC35F4A4IF30 521 aa8.32□□□□□ -1.08
CD44-215ENST00000525241 EML1O00423 815 aa8.32□□□□□ -1.08
CD44-215ENST00000525241 NOS2P35228 1153 aa8.32□□□□□ -1.08
CD44-215ENST00000525241 PLA2G4AP47712 749 aa8.32□□□□□ -1.08
CD44-215ENST00000525241 SH3PXD2AQ5TCZ1 1133 aa8.32□□□□□ -1.08
CD44-215ENST00000525241 L3MBTL2Q969R5 705 aa8.32□□□□□ -1.08
CD44-215ENST00000525241 C2orf49Q9BVC5 232 aaPredicted RBP8.32□□□□□ -1.08
CD44-215ENST00000525241 TIMMDC1Q9NPL8 285 aa8.32□□□□□ -1.08
CD44-215ENST00000525241 SERTM1A2A2V5 107 aa8.31□□□□□ -1.08
CD44-215ENST00000525241 CHMP7Q8WUX9 453 aaPredicted RBP8.31□□□□□ -1.08
CD44-215ENST00000525241 CXXC1Q9P0U4 656 aaPredicted RBP8.31□□□□□ -1.08
CD44-215ENST00000525241 ATP2B4P23634 1241 aa8.3□□□□□ -1.08
CD44-215ENST00000525241 SSFA2P28290 1259 aa8.3□□□□□ -1.08
CD44-215ENST00000525241 HIRAP54198 1017 aaPredicted RBP8.3□□□□□ -1.08
CD44-215ENST00000525241 PDE4CQ08493 712 aa8.3□□□□□ -1.08
CD44-215ENST00000525241 FKBP5Q13451 457 aaPredicted RBP8.3□□□□□ -1.08
CD44-215ENST00000525241 DYRK1BQ9Y463 629 aa8.3□□□□□ -1.08
CD44-215ENST00000525241 FOXO3O43524 673 aa8.29□□□□□ -1.08
CD44-215ENST00000525241 PHLDB3Q6NSJ2 640 aa8.29□□□□□ -1.08
CD44-215ENST00000525241 CCDC155Q8N6L0 562 aa8.29□□□□□ -1.08
CD44-215ENST00000525241 ZNF232Q9UNY5 417 aa8.29□□□□□ -1.08
CD44-215ENST00000525241 A0A1B0GTH6 734 aa8.28□□□□□ -1.08
CD44-215ENST00000525241 MSX1P28360 303 aa8.28□□□□□ -1.08
CD44-215ENST00000525241 TXLNAP40222 546 aa8.28□□□□□ -1.08
CD44-215ENST00000525241 AIDAQ96BJ3 306 aa8.28□□□□□ -1.08
CD44-215ENST00000525241 ZDHHC3Q9NYG2 299 aa8.28□□□□□ -1.08
CD44-215ENST00000525241 CHMP3Q9Y3E7 222 aa8.28□□□□□ -1.08
CD44-215ENST00000525241 HCN4Q9Y3Q4 1203 aa8.28□□□□□ -1.08
CD44-215ENST00000525241 F11P03951 625 aa8.27□□□□□ -1.09
CD44-215ENST00000525241 ATP4AP20648 1035 aa8.27□□□□□ -1.09
CD44-215ENST00000525241 C1orf216Q8TAB5 229 aa8.27□□□□□ -1.09
CD44-215ENST00000525241 C7orf43Q8WVR3 580 aa8.27□□□□□ -1.09
CD44-215ENST00000525241 PPFIA3O75145 1194 aa8.26□□□□□ -1.09
CD44-215ENST00000525241 SCNN1AP37088 669 aa8.26□□□□□ -1.09
CD44-215ENST00000525241 NBPF1Q3BBV0 1214 aa8.26□□□□□ -1.09
CD44-215ENST00000525241 CAPN12Q6ZSI9 719 aa8.26□□□□□ -1.09
CD44-215ENST00000525241 GAS2L1Q99501 681 aaPredicted RBP8.26□□□□□ -1.09
CD44-215ENST00000525241 TRAIPQ9BWF2 469 aa8.26□□□□□ -1.09
CD44-215ENST00000525241 C1orf53Q5VUE5 145 aa8.25□□□□□ -1.09
CD44-215ENST00000525241 ALDH16A1Q8IZ83 802 aa8.25□□□□□ -1.09
CD44-215ENST00000525241 PHACTR1Q9C0D0 580 aa8.25□□□□□ -1.09
CD44-215ENST00000525241 GPAMQ9HCL2 828 aa8.25□□□□□ -1.09
CD44-215ENST00000525241 CUEDC1Q9NWM3 386 aaPredicted RBP8.25□□□□□ -1.09
CD44-215ENST00000525241 NXF1Q9UBU9 619 aaKnown RBP8.25□□□□□ -1.09
CD44-215ENST00000525241 ITGA6P23229 1130 aa8.24□□□□□ -1.09
CD44-215ENST00000525241 COL26A1Q96A83 441 aa8.24□□□□□ -1.09
CD44-215ENST00000525241 MKNK1Q9BUB5 465 aa8.24□□□□□ -1.09
CD44-215ENST00000525241 TATP17735 454 aaPredicted RBP8.23□□□□□ -1.09
CD44-215ENST00000525241 RIPOR1Q6ZS17 1223 aa8.23□□□□□ -1.09
CD44-215ENST00000525241 VTI1AQ96AJ9 217 aa8.23□□□□□ -1.09
CD44-215ENST00000525241 KLRG1Q96E93 195 aa8.23□□□□□ -1.09
CD44-215ENST00000525241 NGLY1Q96IV0 654 aa8.23□□□□□ -1.09
CD44-215ENST00000525241 ZIC5Q96T25 663 aa8.23□□□□□ -1.09
CD44-215ENST00000525241 CRISPLD1Q9H336 500 aa8.23□□□□□ -1.09
CD44-215ENST00000525241 RUBCNLQ9H714 662 aa8.23□□□□□ -1.09
CD44-215ENST00000525241 QTRT2Q9H974 415 aaKnown RBP8.23□□□□□ -1.09
CD44-215ENST00000525241 PTCD1O75127 700 aaKnown RBP8.22□□□□□ -1.09
CD44-215ENST00000525241 THBS1P07996 1170 aa8.22□□□□□ -1.09
CD44-215ENST00000525241 DBN1Q16643 649 aa8.22□□□□□ -1.09
CD44-215ENST00000525241 B4GALNT3Q6L9W6 998 aa8.22□□□□□ -1.09
CD44-215ENST00000525241 HOMEZQ8IX15 550 aa8.22□□□□□ -1.09
CD44-215ENST00000525241 NPAS3Q8IXF0 933 aa8.22□□□□□ -1.09
CD44-215ENST00000525241 TRIM22Q8IYM9 498 aa8.22□□□□□ -1.09
CD44-215ENST00000525241 SEPT3Q9UH03 358 aa8.22□□□□□ -1.09
CD44-215ENST00000525241 H3BM21 787 aa8.21□□□□□ -1.1
CD44-215ENST00000525241 BRD1O95696 1058 aa8.21□□□□□ -1.1
CD44-215ENST00000525241 PDIA4P13667 645 aaKnown RBP8.21□□□□□ -1.1
CD44-215ENST00000525241 VEGFBP49765 207 aa8.21□□□□□ -1.1
CD44-215ENST00000525241 RTN1Q16799 776 aa8.21□□□□□ -1.1
CD44-215ENST00000525241 ARSJQ5FYB0 599 aaPredicted RBP8.21□□□□□ -1.1
CD44-215ENST00000525241 MYO19Q96H55 970 aa8.21□□□□□ -1.1
CD44-215ENST00000525241 SAP130Q9H0E3 1048 aa8.21□□□□□ -1.1
CD44-215ENST00000525241 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.21□□□□□ -1.15e-38■■■■■ 698.7
CD44-215ENST00000525241 A0A1W2PNR3 127 aa8.2□□□□□ -1.1
CD44-215ENST00000525241 TERTO14746 1132 aaKnown RBP8.2□□□□□ -1.1
CD44-215ENST00000525241 NAA30Q147X3 362 aaPredicted RBP8.2□□□□□ -1.1
CD44-215ENST00000525241 COX20Q5RI15 118 aa8.2□□□□□ -1.1
CD44-215ENST00000525241 BICDL1Q6ZP65 573 aa8.2□□□□□ -1.1
CD44-215ENST00000525241 PGBD3Q8N328 593 aa8.2□□□□□ -1.1
CD44-215ENST00000525241 RHPN1Q8TCX5 695 aa8.2□□□□□ -1.1
CD44-215ENST00000525241 NANOS1Q8WY41 292 aaKnown RBP8.2□□□□□ -1.1
CD44-215ENST00000525241 LRFN2Q9ULH4 789 aa8.2□□□□□ -1.1
CD44-215ENST00000525241 GPC6Q9Y625 555 aaPredicted RBP8.2□□□□□ -1.1
CD44-215ENST00000525241 H7C1W4 665 aa8.19□□□□□ -1.1
CD44-215ENST00000525241 UBAP2LQ14157 1087 aaKnown RBP8.19□□□□□ -1.1
CD44-215ENST00000525241 LBRQ14739 615 aaKnown RBP8.19□□□□□ -1.1
CD44-215ENST00000525241 ZNF837Q96EG3 531 aaPredicted RBP8.19□□□□□ -1.1
CD44-215ENST00000525241 GMCL1Q96IK5 515 aa8.19□□□□□ -1.1
CD44-215ENST00000525241 NUCKS1Q9H1E3 243 aaKnown RBP8.19□□□□□ -1.1
CD44-215ENST00000525241 C16orf46Q6P387 395 aa8.18□□□□□ -1.1
CD44-215ENST00000525241 TXNDC2Q86VQ3 553 aa8.18□□□□□ -1.1
CD44-215ENST00000525241 NLRP8Q86W28 1048 aa8.18□□□□□ -1.1
CD44-215ENST00000525241 VWA5B2Q8N398 1253 aa8.18□□□□□ -1.1
CD44-215ENST00000525241 ARID4AP29374 1257 aaPredicted RBP8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms