RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 SMC4Q9NTJ3 1288 aa10.07□□□□□ -0.8
CSMD1-213ENST00000523488 RNF216Q9NWF9 866 aaPredicted RBP10.07□□□□□ -0.8
CSMD1-213ENST00000523488 C17orf53Q8N3J3 647 aaPredicted RBP10.07□□□□□ -0.8
CSMD1-213ENST00000523488 SNRKQ9NRH2 765 aa10.07□□□□□ -0.8
CSMD1-213ENST00000523488 SIPA1L3O60292 1781 aaPredicted RBP10.07□□□□□ -0.8
CSMD1-213ENST00000523488 A0A1W2PP64 1363 aa10.06□□□□□ -0.8
CSMD1-213ENST00000523488 UBE2HP62256 183 aa10.06□□□□□ -0.8
CSMD1-213ENST00000523488 KRT222Q8N1A0 295 aa10.06□□□□□ -0.8
CSMD1-213ENST00000523488 ALDH8A1Q9H2A2 487 aaPredicted RBP10.06□□□□□ -0.8
CSMD1-213ENST00000523488 USP42Q9H9J4 1324 aaKnown RBP10.06□□□□□ -0.8
CSMD1-213ENST00000523488 ERICH4A6NGS2 130 aa10.06□□□□□ -0.8
CSMD1-213ENST00000523488 CPP00450 1065 aa10.06□□□□□ -0.8
CSMD1-213ENST00000523488 TUBB4AP04350 444 aa10.06□□□□□ -0.8
CSMD1-213ENST00000523488 NPM1P06748 294 aaKnown RBP eCLIP10.06□□□□□ -0.8
CSMD1-213ENST00000523488 ANKRD45Q5TZF3 282 aa10.06□□□□□ -0.8
CSMD1-213ENST00000523488 TMX3Q96JJ7 454 aa10.06□□□□□ -0.8
CSMD1-213ENST00000523488 FHOD1Q9Y613 1164 aa10.06□□□□□ -0.8
CSMD1-213ENST00000523488 SOS1Q07889 1333 aaPredicted RBP10.06□□□□□ -0.8
CSMD1-213ENST00000523488 ECM29Q5VYK3 1845 aa10.06□□□□□ -0.8
CSMD1-213ENST00000523488 ST18O60284 1047 aa10.06□□□□□ -0.8
CSMD1-213ENST00000523488 KMT5BQ4FZB7 885 aa10.06□□□□□ -0.8
CSMD1-213ENST00000523488 JPH4Q96JJ6 628 aa10.06□□□□□ -0.8
CSMD1-213ENST00000523488 IFT57Q9NWB7 429 aa10.06□□□□□ -0.8
CSMD1-213ENST00000523488 ADGRF5Q8IZF2 1346 aa10.05□□□□□ -0.8
CSMD1-213ENST00000523488 ADCY9O60503 1353 aa10.05□□□□□ -0.8
CSMD1-213ENST00000523488 NPATQ14207 1427 aa10.05□□□□□ -0.8
CSMD1-213ENST00000523488 GIGYF1O75420 1035 aaPredicted RBP10.05□□□□□ -0.8
CSMD1-213ENST00000523488 TRERF1Q96PN7 1200 aa10.05□□□□□ -0.8
CSMD1-213ENST00000523488 CPS1P31327 1500 aa10.04□□□□□ -0.8
CSMD1-213ENST00000523488 RICTORQ6R327 1708 aa10.04□□□□□ -0.8
CSMD1-213ENST00000523488 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.04□□□□□ -0.8
CSMD1-213ENST00000523488 RIMS2Q9UQ26 1411 aa10.04□□□□□ -0.8
CSMD1-213ENST00000523488 RPAP2Q8IXW5 612 aaPredicted RBP10.04□□□□□ -0.8
CSMD1-213ENST00000523488 FOXD4L6Q3SYB3 417 aaPredicted RBP10.03□□□□□ -0.8
CSMD1-213ENST00000523488 FOXD4L3Q6VB84 417 aaPredicted RBP10.03□□□□□ -0.8
CSMD1-213ENST00000523488 ERO1AQ96HE7 468 aa10.03□□□□□ -0.8
CSMD1-213ENST00000523488 PLEKHG2Q9H7P9 1386 aa10.03□□□□□ -0.8
CSMD1-213ENST00000523488 WDR33Q9C0J8 1336 aaKnown RBP10.03□□□□□ -0.8
CSMD1-213ENST00000523488 TRIM6-TRIM34B2RNG4 842 aa10.03□□□□□ -0.8
CSMD1-213ENST00000523488 SDSP20132 328 aa10.03□□□□□ -0.8
CSMD1-213ENST00000523488 CTR9Q6PD62 1173 aa10.03□□□□□ -0.8
CSMD1-213ENST00000523488 TRIM34Q9BYJ4 488 aa10.03□□□□□ -0.8
CSMD1-213ENST00000523488 BRMS1Q9HCU9 246 aa10.03□□□□□ -0.8
CSMD1-213ENST00000523488 CAMTA1Q9Y6Y1 1673 aa10.03□□□□□ -0.8
CSMD1-213ENST00000523488 GOLGA6L6A8MZA4 724 aa10.03□□□□□ -0.8
CSMD1-213ENST00000523488 CAVIN2O95810 425 aa10.03□□□□□ -0.8
CSMD1-213ENST00000523488 MTHFSP49914 203 aa10.03□□□□□ -0.8
CSMD1-213ENST00000523488 USP48Q86UV5 1035 aa10.03□□□□□ -0.8
CSMD1-213ENST00000523488 ALKQ9UM73 1620 aa10.02□□□□□ -0.8
CSMD1-213ENST00000523488 NEMFO60524 1076 aa10.02□□□□□ -0.81
CSMD1-213ENST00000523488 GADD45BO75293 160 aaPredicted RBP10.02□□□□□ -0.81
CSMD1-213ENST00000523488 FCHSD2O94868 740 aa10.02□□□□□ -0.81
CSMD1-213ENST00000523488 CEMIPQ8WUJ3 1361 aa10.02□□□□□ -0.81
CSMD1-213ENST00000523488 CERS3Q8IU89 383 aa10.02□□□□□ -0.81
CSMD1-213ENST00000523488 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.02□□□□□ -0.81
CSMD1-213ENST00000523488 ERC2O15083 957 aa10.02□□□□□ -0.81
CSMD1-213ENST00000523488 CRB1P82279 1406 aa10.01□□□□□ -0.81
CSMD1-213ENST00000523488 GSCP56915 257 aaPredicted RBP10.01□□□□□ -0.81
CSMD1-213ENST00000523488 LMO7Q8WWI1 1683 aa10.01□□□□□ -0.81
CSMD1-213ENST00000523488 SPAG9O60271 1321 aaKnown RBP10.01□□□□□ -0.81
CSMD1-213ENST00000523488 SOX12O15370 315 aa10.01□□□□□ -0.81
CSMD1-213ENST00000523488 SWT1Q5T5J6 900 aaKnown RBP10.01□□□□□ -0.81
CSMD1-213ENST00000523488 CFAP53Q96M91 514 aa10.01□□□□□ -0.81
CSMD1-213ENST00000523488 C4AP0C0L4 1744 aa10.01□□□□□ -0.81
CSMD1-213ENST00000523488 C4BP0C0L5 1744 aa10.01□□□□□ -0.81
CSMD1-213ENST00000523488 MRFAP1L1Q96HT8 127 aa10□□□□□ -0.81
CSMD1-213ENST00000523488 HSPA4P34932 840 aa10□□□□□ -0.81
CSMD1-213ENST00000523488 PLA2G4AP47712 749 aa10□□□□□ -0.81
CSMD1-213ENST00000523488 ZSCAN25Q6NSZ9 544 aa10□□□□□ -0.81
CSMD1-213ENST00000523488 CEP85Q6P2H3 762 aa10□□□□□ -0.81
CSMD1-213ENST00000523488 CASC1Q6TDU7 716 aa10□□□□□ -0.81
CSMD1-213ENST00000523488 MRVI1Q9Y6F6 885 aa10□□□□□ -0.81
CSMD1-213ENST00000523488 ZFP91Q96JP5 570 aaPredicted RBP10□□□□□ -0.81
CSMD1-213ENST00000523488 SRCIN1Q9C0H9 1055 aa10□□□□□ -0.81
CSMD1-213ENST00000523488 SUGP1Q8IWZ8 645 aaKnown RBP9.99□□□□□ -0.81
CSMD1-213ENST00000523488 DRC7Q8IY82 874 aa9.99□□□□□ -0.81
CSMD1-213ENST00000523488 SPC24Q8NBT2 197 aa9.99□□□□□ -0.81
CSMD1-213ENST00000523488 DIP2CQ9Y2E4 1556 aa9.99□□□□□ -0.81
CSMD1-213ENST00000523488 U2SURPO15042 1029 aaKnown RBP9.99□□□□□ -0.81
CSMD1-213ENST00000523488 FAM200AQ8TCP9 573 aa9.99□□□□□ -0.81
CSMD1-213ENST00000523488 TSR2Q969E8 191 aaKnown RBP9.99□□□□□ -0.81
CSMD1-213ENST00000523488 ESYT1Q9BSJ8 1104 aa9.99□□□□□ -0.81
CSMD1-213ENST00000523488 RAD51AP2Q09MP3 1159 aa9.99□□□□□ -0.81
CSMD1-213ENST00000523488 MORC1Q86VD1 984 aa9.99□□□□□ -0.81
CSMD1-213ENST00000523488 OSBPL5Q9H0X9 879 aaPredicted RBP9.99□□□□□ -0.81
CSMD1-213ENST00000523488 NPHP4O75161 1426 aaPredicted RBP9.99□□□□□ -0.81
CSMD1-213ENST00000523488 CASZ1Q86V15 1759 aa9.98□□□□□ -0.81
CSMD1-213ENST00000523488 ZSCAN22P10073 491 aaPredicted RBP9.98□□□□□ -0.81
CSMD1-213ENST00000523488 CCZ1BP86790 482 aa9.98□□□□□ -0.81
CSMD1-213ENST00000523488 CCZ1P86791 482 aaPredicted RBP9.98□□□□□ -0.81
CSMD1-213ENST00000523488 CHAMP1Q96JM3 812 aa9.98□□□□□ -0.81
CSMD1-213ENST00000523488 NWD1Q149M9 1564 aa9.98□□□□□ -0.81
CSMD1-213ENST00000523488 ZNF75DP51815 510 aa9.98□□□□□ -0.81
CSMD1-213ENST00000523488 FBXO38Q6PIJ6 1188 aa9.98□□□□□ -0.81
CSMD1-213ENST00000523488 RPAINQ86UA6 219 aa9.98□□□□□ -0.81
CSMD1-213ENST00000523488 ZNF592Q92610 1267 aa9.98□□□□□ -0.81
CSMD1-213ENST00000523488 KIF2AO00139 706 aaPredicted RBP9.98□□□□□ -0.81
CSMD1-213ENST00000523488 CCDC112Q8NEF3 446 aa9.98□□□□□ -0.81
CSMD1-213ENST00000523488 V9GYY5 206 aaPredicted RBP9.98□□□□□ -0.81
CSMD1-213ENST00000523488 API5Q9BZZ5 524 aaKnown RBP9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms