RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 SLC27A3Q5K4L6 730 aa20.96■□□□□ 0.95
LSM1-204ENST00000522515 LINC00116Q8NCU8 138 aa20.96■□□□□ 0.95
LSM1-204ENST00000522515 COL5A3P25940 1745 aaPredicted RBP20.95■□□□□ 0.94
LSM1-204ENST00000522515 TAF1LQ8IZX4 1826 aa20.94■□□□□ 0.94
LSM1-204ENST00000522515 TCERG1O14776 1098 aaKnown RBP20.94■□□□□ 0.94
LSM1-204ENST00000522515 STARD3NLO95772 234 aa20.94■□□□□ 0.94
LSM1-204ENST00000522515 A1BGP04217 495 aa20.93■□□□□ 0.94
LSM1-204ENST00000522515 CCDC30Q5VVM6 783 aa20.93■□□□□ 0.94
LSM1-204ENST00000522515 CRKLP46109 303 aaKnown RBP20.92■□□□□ 0.94
LSM1-204ENST00000522515 PIP4K2AP48426 406 aaPredicted RBP20.92■□□□□ 0.94
LSM1-204ENST00000522515 ZNF428Q96B54 188 aa20.92■□□□□ 0.94
LSM1-204ENST00000522515 RARSP54136 660 aaKnown RBP20.91■□□□□ 0.94
LSM1-204ENST00000522515 SSH1Q8WYL5 1049 aa20.91■□□□□ 0.94
LSM1-204ENST00000522515 CHPF2Q9P2E5 772 aa20.91■□□□□ 0.94
LSM1-204ENST00000522515 PDIA6Q15084 440 aa20.9■□□□□ 0.94
LSM1-204ENST00000522515 INTS5Q6P9B9 1019 aaKnown RBP20.9■□□□□ 0.94
LSM1-204ENST00000522515 BCL2L13Q9BXK5 485 aa20.9■□□□□ 0.94
LSM1-204ENST00000522515 CHMP4AQ9BY43 222 aa20.9■□□□□ 0.94
LSM1-204ENST00000522515 RREB1Q92766 1687 aa20.9■□□□□ 0.94
LSM1-204ENST00000522515 C4BP0C0L5 1744 aa20.89■□□□□ 0.94
LSM1-204ENST00000522515 NBPF26B4DH59 902 aa20.89■□□□□ 0.94
LSM1-204ENST00000522515 ANXA1P04083 346 aa20.89■□□□□ 0.94
LSM1-204ENST00000522515 PROSER3Q2NL68 480 aa20.89■□□□□ 0.94
LSM1-204ENST00000522515 NBPF14Q5TI25 921 aa20.89■□□□□ 0.94
LSM1-204ENST00000522515 NBPF10Q6P3W6 841 aaKnown RBP20.89■□□□□ 0.94
LSM1-204ENST00000522515 NBPF15Q8N660 670 aa20.89■□□□□ 0.94
LSM1-204ENST00000522515 CCDC87Q9NVE4 849 aa20.89■□□□□ 0.94
LSM1-204ENST00000522515 DBF4Q9UBU7 674 aaPredicted RBP20.89■□□□□ 0.94
LSM1-204ENST00000522515 RCAN3Q9UKA8 241 aa20.89■□□□□ 0.94
LSM1-204ENST00000522515 ZBTB1Q9Y2K1 713 aa20.89■□□□□ 0.94
LSM1-204ENST00000522515 MYH14Q7Z406 1995 aaKnown RBP20.89■□□□□ 0.94
LSM1-204ENST00000522515 ALDH1L2Q3SY69 923 aa20.89■□□□□ 0.93
LSM1-204ENST00000522515 STK31Q9BXU1 1019 aa20.89■□□□□ 0.93
LSM1-204ENST00000522515 ERBB4Q15303 1308 aa20.88■□□□□ 0.93
LSM1-204ENST00000522515 CNTNAP4Q9C0A0 1308 aa20.88■□□□□ 0.93
LSM1-204ENST00000522515 SLC4A2P04920 1241 aa20.88■□□□□ 0.93
LSM1-204ENST00000522515 MYL6BP14649 208 aa20.88■□□□□ 0.93
LSM1-204ENST00000522515 CANXP27824 592 aaKnown RBP20.88■□□□□ 0.93
LSM1-204ENST00000522515 RC3H1Q5TC82 1133 aaKnown RBP20.88■□□□□ 0.93
LSM1-204ENST00000522515 DDX21Q9NR30 783 aaKnown RBP eCLIP20.88■□□□□ 0.93
LSM1-204ENST00000522515 BCAR3O75815 825 aa20.87■□□□□ 0.93
LSM1-204ENST00000522515 SMC4Q9NTJ3 1288 aa20.87■□□□□ 0.93
LSM1-204ENST00000522515 LRP10Q7Z4F1 713 aa20.86■□□□□ 0.93
LSM1-204ENST00000522515 MRPL50Q8N5N7 158 aaKnown RBP20.86■□□□□ 0.93
LSM1-204ENST00000522515 NUP188Q5SRE5 1749 aa20.86■□□□□ 0.93
LSM1-204ENST00000522515 GNPATO15228 680 aa20.85■□□□□ 0.93
LSM1-204ENST00000522515 CENPBP07199 599 aaPredicted RBP20.85■□□□□ 0.93
LSM1-204ENST00000522515 HMGB2P26583 209 aaKnown RBP20.85■□□□□ 0.93
LSM1-204ENST00000522515 G2E3Q7L622 706 aa20.85■□□□□ 0.93
LSM1-204ENST00000522515 PHAXQ9H814 394 aaKnown RBP20.85■□□□□ 0.93
LSM1-204ENST00000522515 IL6STP40189 918 aaPredicted RBP20.84■□□□□ 0.93
LSM1-204ENST00000522515 ZNF827Q17R98 1081 aa20.84■□□□□ 0.93
LSM1-204ENST00000522515 AK7Q96M32 723 aa20.84■□□□□ 0.93
LSM1-204ENST00000522515 HYPKQ9NX55 129 aa20.84■□□□□ 0.93
LSM1-204ENST00000522515 RPS6KA4O75676 772 aa20.83■□□□□ 0.92
LSM1-204ENST00000522515 SMIM5Q71RC9 77 aa20.83■□□□□ 0.92
LSM1-204ENST00000522515 AMIGO3Q86WK7 504 aa20.83■□□□□ 0.92
LSM1-204ENST00000522515 AKT1S1Q96B36 256 aa20.83■□□□□ 0.92
LSM1-204ENST00000522515 ZNF330Q9Y3S2 320 aaPredicted RBP20.83■□□□□ 0.92
LSM1-204ENST00000522515 EIF5P55010 431 aaKnown RBP20.82■□□□□ 0.92
LSM1-204ENST00000522515 BRPF1P55201 1214 aaPredicted RBP20.82■□□□□ 0.92
LSM1-204ENST00000522515 CACNA1FO60840 1977 aa20.82■□□□□ 0.92
LSM1-204ENST00000522515 ANO8Q9HCE9 1232 aaPredicted RBP20.81■□□□□ 0.92
LSM1-204ENST00000522515 UBR3Q6ZT12 1888 aa20.81■□□□□ 0.92
LSM1-204ENST00000522515 AIMP1Q12904 312 aaKnown RBP20.8■□□□□ 0.92
LSM1-204ENST00000522515 COPS6Q7L5N1 327 aa20.8■□□□□ 0.92
LSM1-204ENST00000522515 XAGE3Q8WTP9 111 aa20.8■□□□□ 0.92
LSM1-204ENST00000522515 RTCBQ9Y3I0 505 aaKnown RBP20.8■□□□□ 0.92
LSM1-204ENST00000522515 FLIIQ13045 1269 aa20.8■□□□□ 0.92
LSM1-204ENST00000522515 COL15A1P39059 1388 aa20.79■□□□□ 0.92
LSM1-204ENST00000522515 TTLL7Q6ZT98 887 aa20.79■□□□□ 0.92
LSM1-204ENST00000522515 TFCP2L1Q9NZI6 479 aa20.79■□□□□ 0.92
LSM1-204ENST00000522515 NOB1Q9ULX3 412 aaKnown RBP20.79■□□□□ 0.92
LSM1-204ENST00000522515 PHF14O94880 888 aa20.78■□□□□ 0.92
LSM1-204ENST00000522515 SLC15A2Q16348 729 aa20.78■□□□□ 0.92
LSM1-204ENST00000522515 NPM2Q86SE8 214 aaKnown RBP20.78■□□□□ 0.92
LSM1-204ENST00000522515 FRAT1Q92837 279 aaPredicted RBP20.78■□□□□ 0.92
LSM1-204ENST00000522515 KIF16BQ96L93 1317 aa20.78■□□□□ 0.92
LSM1-204ENST00000522515 ARXQ96QS3 562 aa20.77■□□□□ 0.92
LSM1-204ENST00000522515 STK32BQ9NY57 414 aa20.77■□□□□ 0.92
LSM1-204ENST00000522515 TUBGCP6Q96RT7 1819 aa20.77■□□□□ 0.92
LSM1-204ENST00000522515 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.76■□□□□ 0.91
LSM1-204ENST00000522515 FKBP5Q13451 457 aaPredicted RBP20.76■□□□□ 0.91
LSM1-204ENST00000522515 TBC1D2BQ9UPU7 963 aa20.76■□□□□ 0.91
LSM1-204ENST00000522515 SSFA2P28290 1259 aa20.76■□□□□ 0.91
LSM1-204ENST00000522515 TRAPPC3LQ5T215 181 aa20.76■□□□□ 0.91
LSM1-204ENST00000522515 DZIP3Q86Y13 1208 aaKnown RBP20.76■□□□□ 0.91
LSM1-204ENST00000522515 ARHGEF1Q92888 912 aaKnown RBP20.76■□□□□ 0.91
LSM1-204ENST00000522515 PTPRCP08575 1304 aa20.74■□□□□ 0.91
LSM1-204ENST00000522515 A0A087WZG4 1122 aa20.74■□□□□ 0.91
LSM1-204ENST00000522515 PLIN1O60240 522 aa20.74■□□□□ 0.91
LSM1-204ENST00000522515 ADRA2BP18089 450 aa20.74■□□□□ 0.91
LSM1-204ENST00000522515 ANKRD13DQ6ZTN6 518 aa20.74■□□□□ 0.91
LSM1-204ENST00000522515 SUPT16HQ9Y5B9 1047 aaKnown RBP20.74■□□□□ 0.91
LSM1-204ENST00000522515 C4AP0C0L4 1744 aa20.74■□□□□ 0.91
LSM1-204ENST00000522515 PI4KAP2A4QPH2 592 aa20.73■□□□□ 0.91
LSM1-204ENST00000522515 DDX58O95786 925 aaKnown RBP20.73■□□□□ 0.91
LSM1-204ENST00000522515 KIF6Q6ZMV9 814 aa20.73■□□□□ 0.91
LSM1-204ENST00000522515 PI4KAP1Q8N8J0 262 aa20.73■□□□□ 0.91
LSM1-204ENST00000522515 ARHGAP45Q92619 1136 aa20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 165.9 ms