RNA–Protein interactions for RNA: ENST00000521253.1

TRIM35-203, Transcript of tripartite motif containing 35, humanhuman

TSL 1 (best) BASIC

Gene TRIM35, Length 1,215 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35-203ENST00000521253 RRP7AQ9Y3A4 280 aaKnown RBP27.23■■□□□ 1.95
TRIM35-203ENST00000521253 SOS1Q07889 1333 aaPredicted RBP27.22■■□□□ 1.95
TRIM35-203ENST00000521253 TEX13AQ9BXU3 409 aaPredicted RBP27.22■■□□□ 1.95
TRIM35-203ENST00000521253 KLHL34Q8N239 644 aa27.21■■□□□ 1.95
TRIM35-203ENST00000521253 GYS1P13807 737 aa27.19■■□□□ 1.94
TRIM35-203ENST00000521253 NEUROD2Q15784 382 aa27.19■■□□□ 1.94
TRIM35-203ENST00000521253 PNISRQ8TF01 805 aaKnown RBP27.19■■□□□ 1.94
TRIM35-203ENST00000521253 CANXP27824 592 aaKnown RBP27.18■■□□□ 1.94
TRIM35-203ENST00000521253 LMOD3Q0VAK6 560 aa27.18■■□□□ 1.94
TRIM35-203ENST00000521253 SRP68Q9UHB9 627 aaKnown RBP27.18■■□□□ 1.94
TRIM35-203ENST00000521253 USP42Q9H9J4 1324 aaKnown RBP27.17■■□□□ 1.94
TRIM35-203ENST00000521253 PRAMEF22A3QJZ6 481 aa27.17■■□□□ 1.94
TRIM35-203ENST00000521253 NLGN1Q8N2Q7 840 aa27.17■■□□□ 1.94
TRIM35-203ENST00000521253 C4AP0C0L4 1744 aa27.16■■□□□ 1.94
TRIM35-203ENST00000521253 MMP10P09238 476 aa27.16■■□□□ 1.94
TRIM35-203ENST00000521253 SNRPA1P09661 255 aaKnown RBP27.16■■□□□ 1.94
TRIM35-203ENST00000521253 COL15A1P39059 1388 aa27.16■■□□□ 1.94
TRIM35-203ENST00000521253 USP16Q9Y5T5 823 aa27.15■■□□□ 1.94
TRIM35-203ENST00000521253 TRIM35Q9UPQ4 493 aa27.14■■□□□ 1.94
TRIM35-203ENST00000521253 A1BGP04217 495 aa27.13■■□□□ 1.93
TRIM35-203ENST00000521253 EIF5P55010 431 aaKnown RBP27.13■■□□□ 1.93
TRIM35-203ENST00000521253 NLGN2Q8NFZ4 835 aa27.13■■□□□ 1.93
TRIM35-203ENST00000521253 MRS2Q9HD23 443 aa27.13■■□□□ 1.93
TRIM35-203ENST00000521253 ZPR1O75312 459 aa27.12■■□□□ 1.93
TRIM35-203ENST00000521253 FKBP8Q14318 412 aa27.12■■□□□ 1.93
TRIM35-203ENST00000521253 USPL1Q5W0Q7 1092 aa27.12■■□□□ 1.93
TRIM35-203ENST00000521253 EIF4A1P60842 406 aaKnown RBP27.11■■□□□ 1.93
TRIM35-203ENST00000521253 NARFQ9UHQ1 456 aa27.11■■□□□ 1.93
TRIM35-203ENST00000521253 TSPYL4Q9UJ04 414 aa27.11■■□□□ 1.93
TRIM35-203ENST00000521253 APAF1O14727 1248 aa27.1■■□□□ 1.93
TRIM35-203ENST00000521253 IL6STP40189 918 aaPredicted RBP27.1■■□□□ 1.93
TRIM35-203ENST00000521253 CD2APQ9Y5K6 639 aa27.1■■□□□ 1.93
TRIM35-203ENST00000521253 KDM3BQ7LBC6 1761 aa27.09■■□□□ 1.93
TRIM35-203ENST00000521253 ZNF330Q9Y3S2 320 aaPredicted RBP27.09■■□□□ 1.93
TRIM35-203ENST00000521253 A0A087WZG4 1122 aa27.08■■□□□ 1.93
TRIM35-203ENST00000521253 DCAF8L1A6NGE4 600 aa27.08■■□□□ 1.93
TRIM35-203ENST00000521253 GOLGB1Q14789 3259 aaKnown RBP27.08■■□□□ 1.93
TRIM35-203ENST00000521253 GIGYF1O75420 1035 aaPredicted RBP27.07■■□□□ 1.92
TRIM35-203ENST00000521253 PIP4K2AP48426 406 aaPredicted RBP27.07■■□□□ 1.92
TRIM35-203ENST00000521253 BABAM1Q9NWV8 329 aa27.07■■□□□ 1.92
TRIM35-203ENST00000521253 UTRNP46939 3433 aa27.06■■□□□ 1.92
TRIM35-203ENST00000521253 BCL2L12Q9HB09 334 aa27.06■■□□□ 1.92
TRIM35-203ENST00000521253 PARP3Q9Y6F1 533 aa27.05■■□□□ 1.92
TRIM35-203ENST00000521253 DDR1Q08345 913 aa27.04■■□□□ 1.92
TRIM35-203ENST00000521253 TBC1D2BQ9UPU7 963 aa27.04■■□□□ 1.92
TRIM35-203ENST00000521253 NBPF26B4DH59 902 aa27.03■■□□□ 1.92
TRIM35-203ENST00000521253 TM4SF1P30408 202 aa27.03■■□□□ 1.92
TRIM35-203ENST00000521253 NBPF10Q6P3W6 841 aaKnown RBP27.03■■□□□ 1.92
TRIM35-203ENST00000521253 NPM2Q86SE8 214 aaKnown RBP27.03■■□□□ 1.92
TRIM35-203ENST00000521253 NBPF15Q8N660 670 aa27.03■■□□□ 1.92
TRIM35-203ENST00000521253 CHL1O00533 1208 aa27.02■■□□□ 1.92
TRIM35-203ENST00000521253 NFIXQ14938 502 aa27.01■■□□□ 1.91
TRIM35-203ENST00000521253 LAS1LQ9Y4W2 734 aaKnown RBP27.01■■□□□ 1.91
TRIM35-203ENST00000521253 POLRMTO00411 1230 aaKnown RBP27■■□□□ 1.91
TRIM35-203ENST00000521253 C10orf71Q711Q0 1435 aa26.99■■□□□ 1.91
TRIM35-203ENST00000521253 GPR162Q16538 588 aa26.99■■□□□ 1.91
TRIM35-203ENST00000521253 DZIP3Q86Y13 1208 aaKnown RBP26.99■■□□□ 1.91
TRIM35-203ENST00000521253 CAMTA2O94983 1202 aa26.98■■□□□ 1.91
TRIM35-203ENST00000521253 PELP1Q8IZL8 1130 aaKnown RBP26.98■■□□□ 1.91
TRIM35-203ENST00000521253 LAMB4A4D0S4 1761 aa26.98■■□□□ 1.91
TRIM35-203ENST00000521253 SENP3-EIF4A1A0A087X0R7 540 aa26.97■■□□□ 1.91
TRIM35-203ENST00000521253 CFAP44Q96MT7 982 aa26.97■■□□□ 1.91
TRIM35-203ENST00000521253 TBC1D9BQ66K14 1250 aa26.95■■□□□ 1.9
TRIM35-203ENST00000521253 BICDL1Q6ZP65 573 aa26.95■■□□□ 1.9
TRIM35-203ENST00000521253 SCN7AQ01118 1682 aa26.95■■□□□ 1.9
TRIM35-203ENST00000521253 KRT24Q2M2I5 525 aa26.94■■□□□ 1.9
TRIM35-203ENST00000521253 PXDNLA1KZ92 1463 aa26.93■■□□□ 1.9
TRIM35-203ENST00000521253 ZNF853P0CG23 659 aa26.93■■□□□ 1.9
TRIM35-203ENST00000521253 YBX3P16989 372 aaKnown RBP eCLIP26.93■■□□□ 1.9
TRIM35-203ENST00000521253 TGFB2P61812 414 aa26.93■■□□□ 1.9
TRIM35-203ENST00000521253 CALD1Q05682 793 aaKnown RBP26.93■■□□□ 1.9
TRIM35-203ENST00000521253 SERPINB2P05120 415 aa26.92■■□□□ 1.9
TRIM35-203ENST00000521253 EIF2S2P20042 333 aaKnown RBP26.92■■□□□ 1.9
TRIM35-203ENST00000521253 MBIPQ9NS73 344 aa26.92■■□□□ 1.9
TRIM35-203ENST00000521253 IFT57Q9NWB7 429 aa26.92■■□□□ 1.9
TRIM35-203ENST00000521253 KIF13BQ9NQT8 1826 aa26.92■■□□□ 1.9
TRIM35-203ENST00000521253 ERBB4Q15303 1308 aa26.91■■□□□ 1.9
TRIM35-203ENST00000521253 MYL6BP14649 208 aa26.91■■□□□ 1.9
TRIM35-203ENST00000521253 FAM9BQ8IZU0 186 aa26.91■■□□□ 1.9
TRIM35-203ENST00000521253 NGEFQ8N5V2 710 aa26.91■■□□□ 1.9
TRIM35-203ENST00000521253 WWC3Q9ULE0 1092 aa26.91■■□□□ 1.9
TRIM35-203ENST00000521253 A0A0G2JLW4 131 aa26.9■■□□□ 1.9
TRIM35-203ENST00000521253 CCDC27Q2M243 656 aa26.9■■□□□ 1.9
TRIM35-203ENST00000521253 DPEP1P16444 411 aa26.89■■□□□ 1.9
TRIM35-203ENST00000521253 GNAI1P63096 354 aa26.89■■□□□ 1.9
TRIM35-203ENST00000521253 CLEC4GQ6UXB4 293 aa26.89■■□□□ 1.9
TRIM35-203ENST00000521253 PDIA6Q15084 440 aa26.88■■□□□ 1.89
TRIM35-203ENST00000521253 ZNF652Q9Y2D9 606 aa26.88■■□□□ 1.89
TRIM35-203ENST00000521253 BCORQ6W2J9 1755 aa26.88■■□□□ 1.89
TRIM35-203ENST00000521253 CARMIL3Q8ND23 1372 aa26.87■■□□□ 1.89
TRIM35-203ENST00000521253 WWC1Q8IX03 1113 aa26.87■■□□□ 1.89
TRIM35-203ENST00000521253 NECTIN2Q92692 538 aa26.87■■□□□ 1.89
TRIM35-203ENST00000521253 SETDB2Q96T68 719 aa26.87■■□□□ 1.89
TRIM35-203ENST00000521253 KIAA1551Q9HCM1 1747 aa26.87■■□□□ 1.89
TRIM35-203ENST00000521253 RGL2O15211 777 aa26.86■■□□□ 1.89
TRIM35-203ENST00000521253 PROSER3Q2NL68 480 aa26.86■■□□□ 1.89
TRIM35-203ENST00000521253 NCBP3Q53F19 620 aaKnown RBP26.86■■□□□ 1.89
TRIM35-203ENST00000521253 TTLL7Q6ZT98 887 aa26.86■■□□□ 1.89
TRIM35-203ENST00000521253 LRP10Q7Z4F1 713 aa26.86■■□□□ 1.89
TRIM35-203ENST00000521253 NRXN2Q9P2S2 1712 aa26.85■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms