RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 PTCD1O75127 700 aaKnown RBP20.18■□□□□ 0.82
NUP54-214ENST00000514307 SLC4A10Q6U841 1118 aa20.18■□□□□ 0.82
NUP54-214ENST00000514307 USP16Q9Y5T5 823 aa20.18■□□□□ 0.82
NUP54-214ENST00000514307 SCN11AQ9UI33 1791 aa20.18■□□□□ 0.82
NUP54-214ENST00000514307 PHAXQ9H814 394 aaKnown RBP20.17■□□□□ 0.82
NUP54-214ENST00000514307 ATG3Q9NT62 314 aa20.17■□□□□ 0.82
NUP54-214ENST00000514307 STARD3NLO95772 234 aa20.16■□□□□ 0.82
NUP54-214ENST00000514307 SMARCC1Q92922 1105 aaPredicted RBP20.16■□□□□ 0.82
NUP54-214ENST00000514307 HDAC5Q9UQL6 1122 aa20.16■□□□□ 0.82
NUP54-214ENST00000514307 NRAPQ86VF7 1730 aa20.16■□□□□ 0.82
NUP54-214ENST00000514307 PRAMEF22A3QJZ6 481 aa20.15■□□□□ 0.82
NUP54-214ENST00000514307 KSR2Q6VAB6 950 aa20.15■□□□□ 0.82
NUP54-214ENST00000514307 ASAP1Q9ULH1 1129 aa20.15■□□□□ 0.82
NUP54-214ENST00000514307 KDM3BQ7LBC6 1761 aa20.15■□□□□ 0.82
NUP54-214ENST00000514307 GNAI3P08754 354 aa20.14■□□□□ 0.81
NUP54-214ENST00000514307 ZNF772Q68DY9 489 aaPredicted RBP20.14■□□□□ 0.81
NUP54-214ENST00000514307 DNAAF4Q8WXU2 420 aa20.14■□□□□ 0.81
NUP54-214ENST00000514307 RBM42Q9BTD8 480 aaKnown RBP20.14■□□□□ 0.81
NUP54-214ENST00000514307 PCDHB15Q9Y5E8 787 aa20.14■□□□□ 0.81
NUP54-214ENST00000514307 BCL9O00512 1426 aa20.13■□□□□ 0.81
NUP54-214ENST00000514307 PI4KAP2A4QPH2 592 aa20.13■□□□□ 0.81
NUP54-214ENST00000514307 F6X3S4 739 aa20.13■□□□□ 0.81
NUP54-214ENST00000514307 PDIA6Q15084 440 aa20.13■□□□□ 0.81
NUP54-214ENST00000514307 PI4KAP1Q8N8J0 262 aa20.13■□□□□ 0.81
NUP54-214ENST00000514307 MYL6BP14649 208 aa20.12■□□□□ 0.81
NUP54-214ENST00000514307 HDAC1Q13547 482 aaPredicted RBP20.12■□□□□ 0.81
NUP54-214ENST00000514307 SRCIN1Q9C0H9 1055 aa20.12■□□□□ 0.81
NUP54-214ENST00000514307 RIC3Q7Z5B4 369 aa20.11■□□□□ 0.81
NUP54-214ENST00000514307 RPAP2Q8IXW5 612 aaPredicted RBP20.11■□□□□ 0.81
NUP54-214ENST00000514307 SIPA1L3O60292 1781 aaPredicted RBP20.11■□□□□ 0.81
NUP54-214ENST00000514307 NEXNQ0ZGT2 675 aa20.1■□□□□ 0.81
NUP54-214ENST00000514307 ANKRD13DQ6ZTN6 518 aa20.1■□□□□ 0.81
NUP54-214ENST00000514307 COPS6Q7L5N1 327 aa20.1■□□□□ 0.81
NUP54-214ENST00000514307 ATRNO75882 1429 aa20.1■□□□□ 0.81
NUP54-214ENST00000514307 KDM2BQ8NHM5 1336 aa20.09■□□□□ 0.81
NUP54-214ENST00000514307 ALDH1L1O75891 902 aa20.09■□□□□ 0.81
NUP54-214ENST00000514307 IGHDP01880 384 aa20.09■□□□□ 0.81
NUP54-214ENST00000514307 ANXA1P04083 346 aa20.09■□□□□ 0.81
NUP54-214ENST00000514307 AIMP1Q12904 312 aaKnown RBP20.09■□□□□ 0.81
NUP54-214ENST00000514307 PROSER3Q2NL68 480 aa20.09■□□□□ 0.81
NUP54-214ENST00000514307 SEPT12Q8IYM1 358 aa20.09■□□□□ 0.81
NUP54-214ENST00000514307 XAGE3Q8WTP9 111 aa20.09■□□□□ 0.81
NUP54-214ENST00000514307 ACSBG1Q96GR2 724 aa20.09■□□□□ 0.81
NUP54-214ENST00000514307 MAP3K2Q9Y2U5 619 aa20.09■□□□□ 0.81
NUP54-214ENST00000514307 GNAI2P04899 355 aa20.08■□□□□ 0.81
NUP54-214ENST00000514307 NPM2Q86SE8 214 aaKnown RBP20.08■□□□□ 0.81
NUP54-214ENST00000514307 RGS12O14924 1447 aa20.08■□□□□ 0.8
NUP54-214ENST00000514307 BEND3Q5T5X7 828 aa20.07■□□□□ 0.8
NUP54-214ENST00000514307 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.07■□□□□ 0.8
NUP54-214ENST00000514307 A1BGP04217 495 aa20.06■□□□□ 0.8
NUP54-214ENST00000514307 DNAJC10Q8IXB1 793 aa20.06■□□□□ 0.8
NUP54-214ENST00000514307 LINS1Q8NG48 757 aa20.06■□□□□ 0.8
NUP54-214ENST00000514307 PLBD2Q8NHP8 589 aa20.06■□□□□ 0.8
NUP54-214ENST00000514307 HMMRO75330 724 aa20.05■□□□□ 0.8
NUP54-214ENST00000514307 RBM6P78332 1123 aaKnown RBP20.05■□□□□ 0.8
NUP54-214ENST00000514307 UBTFL1P0CB47 393 aaPredicted RBP20.04■□□□□ 0.8
NUP54-214ENST00000514307 GCC1Q96CN9 775 aa20.04■□□□□ 0.8
NUP54-214ENST00000514307 METTL22Q9BUU2 404 aaPredicted RBP20.04■□□□□ 0.8
NUP54-214ENST00000514307 SHANK3Q9BYB0 1731 aa20.03■□□□□ 0.8
NUP54-214ENST00000514307 NBPF26B4DH59 902 aa20.03■□□□□ 0.8
NUP54-214ENST00000514307 CYP19A1P11511 503 aaPredicted RBP20.03■□□□□ 0.8
NUP54-214ENST00000514307 HMGB2P26583 209 aaKnown RBP20.03■□□□□ 0.8
NUP54-214ENST00000514307 NBPF14Q5TI25 921 aa20.03■□□□□ 0.8
NUP54-214ENST00000514307 NBPF10Q6P3W6 841 aaKnown RBP20.03■□□□□ 0.8
NUP54-214ENST00000514307 NBPF15Q8N660 670 aa20.03■□□□□ 0.8
NUP54-214ENST00000514307 ANKRD44Q8N8A2 993 aa20.03■□□□□ 0.8
NUP54-214ENST00000514307 MEIS3Q99687 375 aa20.03■□□□□ 0.8
NUP54-214ENST00000514307 USP44Q9H0E7 712 aa20.03■□□□□ 0.8
NUP54-214ENST00000514307 C9orf78Q9NZ63 289 aaPredicted RBP20.03■□□□□ 0.8
NUP54-214ENST00000514307 PXDNLA1KZ92 1463 aa20.03■□□□□ 0.8
NUP54-214ENST00000514307 CACNA1FO60840 1977 aa20.03■□□□□ 0.8
NUP54-214ENST00000514307 LOC102724428A0A0B4J2F2 783 aa20.02■□□□□ 0.8
NUP54-214ENST00000514307 ATP6V1AP38606 617 aa20.02■□□□□ 0.8
NUP54-214ENST00000514307 SIK1P57059 783 aa20.02■□□□□ 0.8
NUP54-214ENST00000514307 LRP10Q7Z4F1 713 aa20.02■□□□□ 0.8
NUP54-214ENST00000514307 KCPQ6ZWJ8 1503 aa20.02■□□□□ 0.79
NUP54-214ENST00000514307 ATP10DQ9P241 1426 aa20.02■□□□□ 0.79
NUP54-214ENST00000514307 ADCY9O60503 1353 aa20.01■□□□□ 0.79
NUP54-214ENST00000514307 KCNQ2O43526 872 aa20.01■□□□□ 0.79
NUP54-214ENST00000514307 FAM196AQ6ZSG2 479 aa20.01■□□□□ 0.79
NUP54-214ENST00000514307 VIRMAQ69YN4 1812 aaKnown RBP20■□□□□ 0.79
NUP54-214ENST00000514307 IBTKQ9P2D0 1353 aaPredicted RBP20■□□□□ 0.79
NUP54-214ENST00000514307 RXRBP28702 533 aa20■□□□□ 0.79
NUP54-214ENST00000514307 KIF6Q6ZMV9 814 aa20■□□□□ 0.79
NUP54-214ENST00000514307 ZBTB47Q9UFB7 747 aaPredicted RBP20■□□□□ 0.79
NUP54-214ENST00000514307 IL6STP40189 918 aaPredicted RBP19.99■□□□□ 0.79
NUP54-214ENST00000514307 ATP8B2P98198 1209 aa19.99■□□□□ 0.79
NUP54-214ENST00000514307 KRT27Q7Z3Y8 459 aa19.99■□□□□ 0.79
NUP54-214ENST00000514307 SMC5Q8IY18 1101 aa19.99■□□□□ 0.79
NUP54-214ENST00000514307 C1orf115Q9H7X2 142 aa19.99■□□□□ 0.79
NUP54-214ENST00000514307 GLI3P10071 1580 aa19.99■□□□□ 0.79
NUP54-214ENST00000514307 WNK3Q9BYP7 1800 aa19.98■□□□□ 0.79
NUP54-214ENST00000514307 SLC4A9Q96Q91 983 aa19.98■□□□□ 0.79
NUP54-214ENST00000514307 MYD88Q99836 296 aa19.98■□□□□ 0.79
NUP54-214ENST00000514307 PALLDQ8WX93 1383 aa19.97■□□□□ 0.79
NUP54-214ENST00000514307 PIP4K2AP48426 406 aaPredicted RBP19.97■□□□□ 0.79
NUP54-214ENST00000514307 CEP85Q6P2H3 762 aa19.97■□□□□ 0.79
NUP54-214ENST00000514307 BCL11BQ9C0K0 894 aaPredicted RBP19.97■□□□□ 0.79
NUP54-214ENST00000514307 DCTPP1Q9H773 170 aa19.97■□□□□ 0.79
NUP54-214ENST00000514307 CCDC87Q9NVE4 849 aa19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms