RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 MORC1Q86VD1 984 aa27.84■■■□□ 2.05
SQSTM1-215ENST00000514093 LGR6Q9HBX8 967 aa27.84■■■□□ 2.05
SQSTM1-215ENST00000514093 GLTPD2A6NH11 291 aa27.83■■■□□ 2.05
SQSTM1-215ENST00000514093 VEGFAP15692 232 aaPredicted RBP27.83■■■□□ 2.05
SQSTM1-215ENST00000514093 CYP19A1P11511 503 aaPredicted RBP27.82■■■□□ 2.04
SQSTM1-215ENST00000514093 SLC52A2Q9HAB3 445 aa27.82■■■□□ 2.04
SQSTM1-215ENST00000514093 NARFQ9UHQ1 456 aa27.82■■■□□ 2.04
SQSTM1-215ENST00000514093 SERPINB2P05120 415 aa27.81■■■□□ 2.04
SQSTM1-215ENST00000514093 ZC3H4Q9UPT8 1303 aaKnown RBP27.81■■■□□ 2.04
SQSTM1-215ENST00000514093 SCN11AQ9UI33 1791 aa27.81■■■□□ 2.04
SQSTM1-215ENST00000514093 AFDNP55196 1824 aaKnown RBP27.81■■■□□ 2.04
SQSTM1-215ENST00000514093 IL13P35225 146 aa27.8■■■□□ 2.04
SQSTM1-215ENST00000514093 AKAP4Q5JQC9 854 aa27.8■■■□□ 2.04
SQSTM1-215ENST00000514093 TTLL6Q8N841 843 aa27.8■■■□□ 2.04
SQSTM1-215ENST00000514093 BCL2L12Q9HB09 334 aa27.8■■■□□ 2.04
SQSTM1-215ENST00000514093 ZBTB1Q9Y2K1 713 aa27.8■■■□□ 2.04
SQSTM1-215ENST00000514093 HSPA1AP0DMV8 641 aaKnown RBP27.79■■■□□ 2.04
SQSTM1-215ENST00000514093 HSPA1BP0DMV9 641 aaKnown RBP27.79■■■□□ 2.04
SQSTM1-215ENST00000514093 C2CD5Q86YS7 1000 aa27.79■■■□□ 2.04
SQSTM1-215ENST00000514093 COL15A1P39059 1388 aa27.78■■■□□ 2.04
SQSTM1-215ENST00000514093 BICDL1Q6ZP65 573 aa27.77■■■□□ 2.04
SQSTM1-215ENST00000514093 CARMIL3Q8ND23 1372 aa27.76■■■□□ 2.03
SQSTM1-215ENST00000514093 NFKBIEO00221 500 aa27.76■■■□□ 2.03
SQSTM1-215ENST00000514093 RNMTO43148 476 aaKnown RBP27.76■■■□□ 2.03
SQSTM1-215ENST00000514093 POTECB2RU33 542 aa27.75■■■□□ 2.03
SQSTM1-215ENST00000514093 H0YIN7 160 aa27.74■■■□□ 2.03
SQSTM1-215ENST00000514093 CANXP27824 592 aaKnown RBP27.74■■■□□ 2.03
SQSTM1-215ENST00000514093 NRXN2Q9P2S2 1712 aa27.74■■■□□ 2.03
SQSTM1-215ENST00000514093 CCDC88AQ3V6T2 1871 aa27.73■■■□□ 2.03
SQSTM1-215ENST00000514093 ZNF219Q9P2Y4 722 aaPredicted RBP27.73■■■□□ 2.03
SQSTM1-215ENST00000514093 HMOX1P09601 288 aa27.72■■■□□ 2.03
SQSTM1-215ENST00000514093 HSPA5P11021 654 aaKnown RBP27.72■■■□□ 2.03
SQSTM1-215ENST00000514093 TIMELESSQ9UNS1 1208 aa27.72■■■□□ 2.03
SQSTM1-215ENST00000514093 DLEC1Q9Y238 1755 aa27.72■■■□□ 2.03
SQSTM1-215ENST00000514093 TIAM2Q8IVF5 1701 aa27.72■■■□□ 2.03
SQSTM1-215ENST00000514093 CCDC24Q8N4L8 307 aa27.7■■■□□ 2.02
SQSTM1-215ENST00000514093 ZNF622Q969S3 477 aaKnown RBP eCLIP27.7■■■□□ 2.02
SQSTM1-215ENST00000514093 DPY19L2Q6NUT2 758 aa27.69■■■□□ 2.02
SQSTM1-215ENST00000514093 C21orf2O43822 256 aa27.68■■■□□ 2.02
SQSTM1-215ENST00000514093 EIF4G2P78344 907 aaKnown RBP eCLIP27.68■■■□□ 2.02
SQSTM1-215ENST00000514093 MRC1P22897 1456 aa27.68■■■□□ 2.02
SQSTM1-215ENST00000514093 MTHFSDQ2M296 383 aaKnown RBP27.67■■■□□ 2.02
SQSTM1-215ENST00000514093 KNSTRNQ9Y448 316 aa27.67■■■□□ 2.02
SQSTM1-215ENST00000514093 ERFEQ4G0M1 354 aa27.66■■■□□ 2.02
SQSTM1-215ENST00000514093 TBC1D9BQ66K14 1250 aa27.66■■■□□ 2.02
SQSTM1-215ENST00000514093 VSIG10Q8N0Z9 540 aa27.66■■■□□ 2.02
SQSTM1-215ENST00000514093 EIF5P55010 431 aaKnown RBP27.64■■■□□ 2.02
SQSTM1-215ENST00000514093 MKRN1Q9UHC7 482 aaKnown RBP27.64■■■□□ 2.02
SQSTM1-215ENST00000514093 TRIM26Q12899 539 aaPredicted RBP27.63■■■□□ 2.01
SQSTM1-215ENST00000514093 ZNF330Q9Y3S2 320 aaPredicted RBP27.63■■■□□ 2.01
SQSTM1-215ENST00000514093 VIRMAQ69YN4 1812 aaKnown RBP27.62■■■□□ 2.01
SQSTM1-215ENST00000514093 STARD3NLO95772 234 aa27.62■■■□□ 2.01
SQSTM1-215ENST00000514093 POTEIP0CG38 1075 aa27.62■■■□□ 2.01
SQSTM1-215ENST00000514093 POTEJP0CG39 1038 aa27.62■■■□□ 2.01
SQSTM1-215ENST00000514093 TBC1D2BQ9UPU7 963 aa27.62■■■□□ 2.01
SQSTM1-215ENST00000514093 A0A087WZG4 1122 aa27.61■■■□□ 2.01
SQSTM1-215ENST00000514093 PDE6BP35913 854 aa27.61■■■□□ 2.01
SQSTM1-215ENST00000514093 PRR5LQ6MZQ0 368 aa27.61■■■□□ 2.01
SQSTM1-215ENST00000514093 TTC5Q8N0Z6 440 aa27.61■■■□□ 2.01
SQSTM1-215ENST00000514093 BRIP1Q9BX63 1249 aa27.61■■■□□ 2.01
SQSTM1-215ENST00000514093 ANKRD31Q8N7Z5 1873 aa27.61■■■□□ 2.01
SQSTM1-215ENST00000514093 DDNO94850 711 aaPredicted RBP27.6■■■□□ 2.01
SQSTM1-215ENST00000514093 CHADLQ6NUI6 762 aa27.6■■■□□ 2.01
SQSTM1-215ENST00000514093 AMER1Q5JTC6 1135 aaPredicted RBP27.58■■■□□ 2.01
SQSTM1-215ENST00000514093 ZNF496Q96IT1 587 aaPredicted RBP27.58■■■□□ 2.01
SQSTM1-215ENST00000514093 CREBZFQ9NS37 354 aa27.58■■■□□ 2.01
SQSTM1-215ENST00000514093 TAOK3Q9H2K8 898 aa27.57■■■□□ 2
SQSTM1-215ENST00000514093 COL11A2P13942 1736 aaPredicted RBP27.56■■■□□ 2
SQSTM1-215ENST00000514093 UBR2Q8IWV8 1755 aa27.56■■■□□ 2
SQSTM1-215ENST00000514093 FER1L6Q2WGJ9 1857 aa27.56■■■□□ 2
SQSTM1-215ENST00000514093 PDZRN3Q9UPQ7 1066 aa27.56■■■□□ 2
SQSTM1-215ENST00000514093 PCGF6Q9BYE7 350 aa27.55■■■□□ 2
SQSTM1-215ENST00000514093 DICER1Q9UPY3 1922 aaKnown RBP27.55■■■□□ 2
SQSTM1-215ENST00000514093 NPHP1O15259 732 aa27.53■■■□□ 2
SQSTM1-215ENST00000514093 DIAPH1O60610 1272 aaKnown RBP27.53■■■□□ 2
SQSTM1-215ENST00000514093 HEG1Q9ULI3 1381 aa27.52■■■□□ 2
SQSTM1-215ENST00000514093 LTBP3Q9NS15 1303 aa27.52■■■□□ 2
SQSTM1-215ENST00000514093 FOXN1O15353 648 aa27.52■■■□□ 2
SQSTM1-215ENST00000514093 A1BGP04217 495 aa27.52■■■□□ 2
SQSTM1-215ENST00000514093 ZNF790Q6PG37 636 aa27.52■■■□□ 2
SQSTM1-215ENST00000514093 CNBD1Q8NA66 436 aa27.52■■■□□ 2
SQSTM1-215ENST00000514093 IL17REQ8NFR9 667 aa27.52■■■□□ 2
SQSTM1-215ENST00000514093 SETDB2Q96T68 719 aa27.52■■■□□ 2
SQSTM1-215ENST00000514093 SLX4Q8IY92 1834 aa27.51■■□□□ 1.99
SQSTM1-215ENST00000514093 TEFQ10587 303 aa27.51■■□□□ 1.99
SQSTM1-215ENST00000514093 PRPF40BQ6NWY9 871 aaKnown RBP27.51■■□□□ 1.99
SQSTM1-215ENST00000514093 CNKSR1Q969H4 720 aa27.51■■□□□ 1.99
SQSTM1-215ENST00000514093 SCN7AQ01118 1682 aa27.5■■□□□ 1.99
SQSTM1-215ENST00000514093 SRGNP10124 158 aa27.5■■□□□ 1.99
SQSTM1-215ENST00000514093 IL6STP40189 918 aaPredicted RBP27.5■■□□□ 1.99
SQSTM1-215ENST00000514093 TEX13AQ9BXU3 409 aaPredicted RBP27.5■■□□□ 1.99
SQSTM1-215ENST00000514093 CAMTA2O94983 1202 aa27.49■■□□□ 1.99
SQSTM1-215ENST00000514093 STYK1Q6J9G0 422 aa27.49■■□□□ 1.99
SQSTM1-215ENST00000514093 ST5P78524 1137 aa27.48■■□□□ 1.99
SQSTM1-215ENST00000514093 CACNA1SQ13698 1873 aa27.48■■□□□ 1.99
SQSTM1-215ENST00000514093 CNTNAP1P78357 1384 aa27.48■■□□□ 1.99
SQSTM1-215ENST00000514093 NPM2Q86SE8 214 aaKnown RBP27.47■■□□□ 1.99
SQSTM1-215ENST00000514093 MASTLQ96GX5 879 aa27.47■■□□□ 1.99
SQSTM1-215ENST00000514093 GNAT3A8MTJ3 354 aa27.46■■□□□ 1.99
SQSTM1-215ENST00000514093 PIP4K2AP48426 406 aaPredicted RBP27.46■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms