RNA–Protein interactions for RNA: ENST00000513582.5

PDCD6-210, Transcript of programmed cell death 6, human

TSL 2

Gene PDCD6, Length 3,500 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDCD6-210	ENST00000513582	ZKSCAN7	Q9P0L1	754 aa	Predicted RBP	13.21	□□□□□ -0.29
PDCD6-210	ENST00000513582	CLIP2	Q9UDT6	1046 aa		13.21	□□□□□ -0.29
PDCD6-210	ENST00000513582	ZSCAN22	P10073	491 aa	Predicted RBP	13.21	□□□□□ -0.29
PDCD6-210	ENST00000513582	GTF2A1	P52655	376 aa	Predicted RBP	13.21	□□□□□ -0.29
PDCD6-210	ENST00000513582	ERCC6L	Q2NKX8	1250 aa		13.21	□□□□□ -0.29
PDCD6-210	ENST00000513582	BMS1	Q14692	1282 aa	Known RBP	13.21	□□□□□ -0.3
PDCD6-210	ENST00000513582	DDX54	Q8TDD1	881 aa	Known RBP	13.21	□□□□□ -0.3
PDCD6-210	ENST00000513582	KIF1BP	Q96EK5	621 aa		13.21	□□□□□ -0.3
PDCD6-210	ENST00000513582	EXOC6B	Q9Y2D4	811 aa		13.21	□□□□□ -0.3
PDCD6-210	ENST00000513582	ARAP3	Q8WWN8	1544 aa		13.2	□□□□□ -0.3
PDCD6-210	ENST00000513582	VAMP4	O75379	141 aa		13.2	□□□□□ -0.3
PDCD6-210	ENST00000513582	CCDC144B	Q3MJ40	725 aa		13.2	□□□□□ -0.3
PDCD6-210	ENST00000513582	CCDC144CP	Q8IYA2	1237 aa		13.2	□□□□□ -0.3
PDCD6-210	ENST00000513582	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	13.2	□□□□□ -0.3
PDCD6-210	ENST00000513582	MYOM2	P54296	1465 aa		13.2	□□□□□ -0.3
PDCD6-210	ENST00000513582	ANO6	Q4KMQ2	910 aa		13.2	□□□□□ -0.3
PDCD6-210	ENST00000513582	LCMT1	Q9UIC8	334 aa		13.2	□□□□□ -0.3
PDCD6-210	ENST00000513582	STX6	O43752	255 aa		13.19	□□□□□ -0.3
PDCD6-210	ENST00000513582	SLC4A2	P04920	1241 aa		13.19	□□□□□ -0.3
PDCD6-210	ENST00000513582	SYT1	P21579	422 aa		13.19	□□□□□ -0.3
PDCD6-210	ENST00000513582	TMEM87A	Q8NBN3	555 aa		13.19	□□□□□ -0.3
PDCD6-210	ENST00000513582	MED14	O60244	1454 aa		13.19	□□□□□ -0.3
PDCD6-210	ENST00000513582	TYRO3	Q06418	890 aa		13.19	□□□□□ -0.3
PDCD6-210	ENST00000513582	ERO1A	Q96HE7	468 aa		13.19	□□□□□ -0.3
PDCD6-210	ENST00000513582	FAM53C	Q9NYF3	392 aa		13.19	□□□□□ -0.3
PDCD6-210	ENST00000513582	IL16	Q14005	1332 aa		13.19	□□□□□ -0.3
PDCD6-210	ENST00000513582	DHX16	O60231	1041 aa	Known RBP	13.19	□□□□□ -0.3
PDCD6-210	ENST00000513582	ST5	P78524	1137 aa		13.19	□□□□□ -0.3
PDCD6-210	ENST00000513582	CBX8	Q9HC52	389 aa		13.19	□□□□□ -0.3
PDCD6-210	ENST00000513582	RPAP1	Q9BWH6	1393 aa	Predicted RBP	13.18	□□□□□ -0.3
PDCD6-210	ENST00000513582	SBNO2	Q9Y2G9	1366 aa		13.18	□□□□□ -0.3
PDCD6-210	ENST00000513582	CHRM1	P11229	460 aa	Predicted RBP	13.18	□□□□□ -0.3
PDCD6-210	ENST00000513582	ZNF75D	P51815	510 aa		13.18	□□□□□ -0.3
PDCD6-210	ENST00000513582	TEX35	Q5T0J7	233 aa		13.18	□□□□□ -0.3
PDCD6-210	ENST00000513582	GORAB	Q5T7V8	394 aa		13.18	□□□□□ -0.3
PDCD6-210	ENST00000513582	CCDC191	Q8NCU4	936 aa		13.18	□□□□□ -0.3
PDCD6-210	ENST00000513582	EFCC1	Q9HA90	598 aa		13.18	□□□□□ -0.3
PDCD6-210	ENST00000513582	LRRFIP2	Q9Y608	721 aa	Known RBP	13.18	□□□□□ -0.3
PDCD6-210	ENST00000513582	MRVI1	Q9Y6F6	885 aa		13.18	□□□□□ -0.3
PDCD6-210	ENST00000513582	SLU7	O95391	586 aa	Known RBP	13.18	□□□□□ -0.3
PDCD6-210	ENST00000513582	APP	P05067	770 aa		13.18	□□□□□ -0.3
PDCD6-210	ENST00000513582	C8orf58	Q8NAV2	365 aa		13.18	□□□□□ -0.3
PDCD6-210	ENST00000513582	NFATC2IP	Q8NCF5	419 aa		13.18	□□□□□ -0.3
PDCD6-210	ENST00000513582	ZCCHC17	Q9NP64	241 aa	Known RBP	13.18	□□□□□ -0.3
PDCD6-210	ENST00000513582	VPS37C	A5D8V6	355 aa	Predicted RBP	13.18	□□□□□ -0.3
PDCD6-210	ENST00000513582	HTATSF1	O43719	755 aa	Known RBP	13.18	□□□□□ -0.3
PDCD6-210	ENST00000513582	F13A1	P00488	732 aa		13.18	□□□□□ -0.3
PDCD6-210	ENST00000513582	LRRN4CL	Q8ND94	238 aa		13.18	□□□□□ -0.3
PDCD6-210	ENST00000513582	STK31	Q9BXU1	1019 aa		13.18	□□□□□ -0.3
PDCD6-210	ENST00000513582	MYO1C	O00159	1063 aa		13.17	□□□□□ -0.3
PDCD6-210	ENST00000513582	MAP3K11	Q16584	847 aa		13.17	□□□□□ -0.3
PDCD6-210	ENST00000513582	FILIP1	Q7Z7B0	1213 aa		13.17	□□□□□ -0.3
PDCD6-210	ENST00000513582	ESYT1	Q9BSJ8	1104 aa		13.17	□□□□□ -0.3
PDCD6-210	ENST00000513582	IL1RAPL2	Q9NP60	686 aa		13.17	□□□□□ -0.3
PDCD6-210	ENST00000513582	FHOD1	Q9Y613	1164 aa		13.17	□□□□□ -0.3
PDCD6-210	ENST00000513582	KIAA1210	Q9ULL0	1709 aa		13.17	□□□□□ -0.3
PDCD6-210	ENST00000513582	MAP3K4	Q9Y6R4	1608 aa		13.17	□□□□□ -0.3
PDCD6-210	ENST00000513582	ABCC4	O15439	1325 aa		13.17	□□□□□ -0.3
PDCD6-210	ENST00000513582	CLCN6	P51797	869 aa		13.17	□□□□□ -0.3
PDCD6-210	ENST00000513582	GNAI1	P63096	354 aa		13.17	□□□□□ -0.3
PDCD6-210	ENST00000513582	KLHL34	Q8N239	644 aa		13.17	□□□□□ -0.3
PDCD6-210	ENST00000513582	TSPYL4	Q9UJ04	414 aa		13.17	□□□□□ -0.3
PDCD6-210	ENST00000513582	NUP62CL	Q9H1M0	184 aa		13.17	□□□□□ -0.3
PDCD6-210	ENST00000513582	POLK	Q9UBT6	870 aa		13.17	□□□□□ -0.3
PDCD6-210	ENST00000513582	SMC3	Q9UQE7	1217 aa		13.17	□□□□□ -0.3
PDCD6-210	ENST00000513582	PNMA6A	P0CW24	399 aa	Predicted RBP	13.16	□□□□□ -0.3
PDCD6-210	ENST00000513582	SKIL	P12757	684 aa		13.16	□□□□□ -0.3
PDCD6-210	ENST00000513582	PLA2G4A	P47712	749 aa		13.16	□□□□□ -0.3
PDCD6-210	ENST00000513582	GPATCH11	Q8N954	259 aa		13.16	□□□□□ -0.3
PDCD6-210	ENST00000513582	SMARCE1	Q969G3	411 aa		13.16	□□□□□ -0.3
PDCD6-210	ENST00000513582	HDAC5	Q9UQL6	1122 aa		13.16	□□□□□ -0.3
PDCD6-210	ENST00000513582	NOP2	P46087	812 aa	Known RBP	13.16	□□□□□ -0.3
PDCD6-210	ENST00000513582	MBIP	Q9NS73	344 aa		13.16	□□□□□ -0.3
PDCD6-210	ENST00000513582	RPGRIP1L	Q68CZ1	1315 aa		13.16	□□□□□ -0.3
PDCD6-210	ENST00000513582	LIG1	P18858	919 aa		13.16	□□□□□ -0.3
PDCD6-210	ENST00000513582	ARHGAP45	Q92619	1136 aa		13.16	□□□□□ -0.3
PDCD6-210	ENST00000513582	ASXL2	Q76L83	1435 aa		13.15	□□□□□ -0.3
PDCD6-210	ENST00000513582	PDE1A	P54750	535 aa		13.15	□□□□□ -0.3
PDCD6-210	ENST00000513582	ARHGAP29	Q52LW3	1261 aa		13.15	□□□□□ -0.3
PDCD6-210	ENST00000513582	NCBP3	Q53F19	620 aa	Known RBP	13.15	□□□□□ -0.3
PDCD6-210	ENST00000513582	FAM173B	Q6P4H8	233 aa		13.15	□□□□□ -0.3
PDCD6-210	ENST00000513582	FERMT3	Q86UX7	667 aa		13.15	□□□□□ -0.3
PDCD6-210	ENST00000513582	ANKRD44	Q8N8A2	993 aa		13.15	□□□□□ -0.3
PDCD6-210	ENST00000513582	DNAJC25	Q9H1X3	360 aa		13.15	□□□□□ -0.3
PDCD6-210	ENST00000513582	TNMD	Q9H2S6	317 aa		13.15	□□□□□ -0.3
PDCD6-210	ENST00000513582	ERBB3	P21860	1342 aa		13.15	□□□□□ -0.3
PDCD6-210	ENST00000513582	ZSCAN26	Q16670	478 aa		13.15	□□□□□ -0.3
PDCD6-210	ENST00000513582	CEP85	Q6P2H3	762 aa		13.15	□□□□□ -0.3
PDCD6-210	ENST00000513582	ATP6V1D	Q9Y5K8	247 aa		13.15	□□□□□ -0.3
PDCD6-210	ENST00000513582	RAD50	Q92878	1312 aa		13.15	□□□□□ -0.3
PDCD6-210	ENST00000513582	PRR29	P0C7W0	189 aa		13.14	□□□□□ -0.31
PDCD6-210	ENST00000513582	LRRC8A	Q8IWT6	810 aa		13.14	□□□□□ -0.31
PDCD6-210	ENST00000513582	TXLNB	Q8N3L3	684 aa		13.14	□□□□□ -0.31
PDCD6-210	ENST00000513582	USHBP1	Q8N6Y0	703 aa		13.14	□□□□□ -0.31
PDCD6-210	ENST00000513582	API5	Q9BZZ5	524 aa	Known RBP	13.14	□□□□□ -0.31
PDCD6-210	ENST00000513582	SLC52A1	Q9NWF4	448 aa		13.14	□□□□□ -0.31
PDCD6-210	ENST00000513582	KIF1B	O60333	1816 aa		13.14	□□□□□ -0.31
PDCD6-210	ENST00000513582	MYCN	P04198	464 aa	Predicted RBP	13.14	□□□□□ -0.31
PDCD6-210	ENST00000513582	CREBRF	Q8IUR6	639 aa		13.14	□□□□□ -0.31
PDCD6-210	ENST00000513582	DEPDC5	O75140	1603 aa		13.14	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 146.2 ms