RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 CHPF2Q9P2E5 772 aa10.49□□□□□ -0.73
RNF4-220ENST00000513578 ERBB4Q15303 1308 aa10.49□□□□□ -0.73
RNF4-220ENST00000513578 F6X3S4 739 aa10.48□□□□□ -0.73
RNF4-220ENST00000513578 HMMRO75330 724 aa10.48□□□□□ -0.73
RNF4-220ENST00000513578 GNAI2P04899 355 aa10.48□□□□□ -0.73
RNF4-220ENST00000513578 SNRPA1P09661 255 aaKnown RBP10.48□□□□□ -0.73
RNF4-220ENST00000513578 EIF2S2P20042 333 aaKnown RBP10.48□□□□□ -0.73
RNF4-220ENST00000513578 CABP4P57796 275 aa10.48□□□□□ -0.73
RNF4-220ENST00000513578 DNAAF4Q8WXU2 420 aa10.48□□□□□ -0.73
RNF4-220ENST00000513578 FMNL2Q96PY5 1086 aa10.48□□□□□ -0.73
RNF4-220ENST00000513578 MEIS3Q99687 375 aa10.48□□□□□ -0.73
RNF4-220ENST00000513578 CDCA7Q9BWT1 371 aaPredicted RBP10.48□□□□□ -0.73
RNF4-220ENST00000513578 PHAXQ9H814 394 aaKnown RBP10.48□□□□□ -0.73
RNF4-220ENST00000513578 BTG4Q9NY30 223 aa10.48□□□□□ -0.73
RNF4-220ENST00000513578 TNS2Q63HR2 1409 aa10.48□□□□□ -0.73
RNF4-220ENST00000513578 KCPQ6ZWJ8 1503 aa10.48□□□□□ -0.73
RNF4-220ENST00000513578 ALDH1L1O75891 902 aa10.47□□□□□ -0.73
RNF4-220ENST00000513578 PDIA6Q15084 440 aa10.47□□□□□ -0.73
RNF4-220ENST00000513578 BEND3Q5T5X7 828 aa10.47□□□□□ -0.73
RNF4-220ENST00000513578 SLC4A10Q6U841 1118 aa10.47□□□□□ -0.73
RNF4-220ENST00000513578 KSR2Q6VAB6 950 aa10.47□□□□□ -0.73
RNF4-220ENST00000513578 TTC5Q8N0Z6 440 aa10.47□□□□□ -0.73
RNF4-220ENST00000513578 CNKSR2Q8WXI2 1034 aa10.47□□□□□ -0.73
RNF4-220ENST00000513578 UPF1Q92900 1129 aaKnown RBP eCLIP10.47□□□□□ -0.73
RNF4-220ENST00000513578 SRCIN1Q9C0H9 1055 aa10.47□□□□□ -0.73
RNF4-220ENST00000513578 C1orf115Q9H7X2 142 aa10.47□□□□□ -0.73
RNF4-220ENST00000513578 STRN4Q9NRL3 753 aa10.47□□□□□ -0.73
RNF4-220ENST00000513578 THRAP3Q9Y2W1 955 aaKnown RBP10.47□□□□□ -0.73
RNF4-220ENST00000513578 ADCY9O60503 1353 aa10.47□□□□□ -0.73
RNF4-220ENST00000513578 DDX58O95786 925 aaKnown RBP10.46□□□□□ -0.73
RNF4-220ENST00000513578 ATP8B2P98198 1209 aa10.46□□□□□ -0.73
RNF4-220ENST00000513578 NECTIN2Q92692 538 aa10.46□□□□□ -0.73
RNF4-220ENST00000513578 ZNF496Q96IT1 587 aaPredicted RBP10.46□□□□□ -0.73
RNF4-220ENST00000513578 USP44Q9H0E7 712 aa10.46□□□□□ -0.73
RNF4-220ENST00000513578 HDAC5Q9UQL6 1122 aa10.46□□□□□ -0.73
RNF4-220ENST00000513578 ARFGEF2Q9Y6D5 1785 aa10.46□□□□□ -0.74
RNF4-220ENST00000513578 SLIT2O94813 1529 aa10.45□□□□□ -0.74
RNF4-220ENST00000513578 PI4KAP2A4QPH2 592 aa10.45□□□□□ -0.74
RNF4-220ENST00000513578 ANP32AP39687 249 aaKnown RBP10.45□□□□□ -0.74
RNF4-220ENST00000513578 SLC39A6Q13433 755 aa10.45□□□□□ -0.74
RNF4-220ENST00000513578 PI4KAP1Q8N8J0 262 aa10.45□□□□□ -0.74
RNF4-220ENST00000513578 NUP188Q5SRE5 1749 aa10.44□□□□□ -0.74
RNF4-220ENST00000513578 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.44□□□□□ -0.74
RNF4-220ENST00000513578 UTYO14607 1347 aa10.44□□□□□ -0.74
RNF4-220ENST00000513578 ANKRD45Q5TZF3 282 aa10.44□□□□□ -0.74
RNF4-220ENST00000513578 LRP10Q7Z4F1 713 aa10.44□□□□□ -0.74
RNF4-220ENST00000513578 AFDNP55196 1824 aaKnown RBP10.44□□□□□ -0.74
RNF4-220ENST00000513578 TUBGCP6Q96RT7 1819 aa10.44□□□□□ -0.74
RNF4-220ENST00000513578 CICQ96RK0 1608 aaPredicted RBP10.44□□□□□ -0.74
RNF4-220ENST00000513578 PRAMEF22A3QJZ6 481 aa10.43□□□□□ -0.74
RNF4-220ENST00000513578 UBTFL1P0CB47 393 aaPredicted RBP10.43□□□□□ -0.74
RNF4-220ENST00000513578 MTX1Q13505 466 aa10.43□□□□□ -0.74
RNF4-220ENST00000513578 PROSER3Q2NL68 480 aa10.43□□□□□ -0.74
RNF4-220ENST00000513578 BMP2KLQ5H9B9 411 aa10.43□□□□□ -0.74
RNF4-220ENST00000513578 VSIG10Q8N0Z9 540 aa10.43□□□□□ -0.74
RNF4-220ENST00000513578 LINS1Q8NG48 757 aa10.43□□□□□ -0.74
RNF4-220ENST00000513578 SSH3Q8TE77 659 aa10.43□□□□□ -0.74
RNF4-220ENST00000513578 LNPKQ9C0E8 428 aa10.43□□□□□ -0.74
RNF4-220ENST00000513578 SPATA31A1Q5TZJ5 1347 aa10.42□□□□□ -0.74
RNF4-220ENST00000513578 POLA2Q14181 598 aa10.42□□□□□ -0.74
RNF4-220ENST00000513578 IPO9Q96P70 1041 aaKnown RBP10.42□□□□□ -0.74
RNF4-220ENST00000513578 TEX13AQ9BXU3 409 aaPredicted RBP10.42□□□□□ -0.74
RNF4-220ENST00000513578 MAP3K2Q9Y2U5 619 aa10.42□□□□□ -0.74
RNF4-220ENST00000513578 USP16Q9Y5T5 823 aa10.42□□□□□ -0.74
RNF4-220ENST00000513578 COL15A1P39059 1388 aa10.41□□□□□ -0.74
RNF4-220ENST00000513578 JCADQ9P266 1359 aa10.41□□□□□ -0.74
RNF4-220ENST00000513578 EXOC5O00471 708 aa10.41□□□□□ -0.74
RNF4-220ENST00000513578 EIF5BO60841 1220 aaKnown RBP10.41□□□□□ -0.74
RNF4-220ENST00000513578 ANXA1P04083 346 aa10.41□□□□□ -0.74
RNF4-220ENST00000513578 BARGINQ6ZT62 677 aa10.41□□□□□ -0.74
RNF4-220ENST00000513578 DDX54Q8TDD1 881 aaKnown RBP10.41□□□□□ -0.74
RNF4-220ENST00000513578 OSBPL3Q9H4L5 887 aa10.41□□□□□ -0.74
RNF4-220ENST00000513578 LRRFIP2Q9Y608 721 aaKnown RBP10.41□□□□□ -0.74
RNF4-220ENST00000513578 DOT1LQ8TEK3 1739 aa10.41□□□□□ -0.74
RNF4-220ENST00000513578 BCL9O00512 1426 aa10.41□□□□□ -0.74
RNF4-220ENST00000513578 ZNF831Q5JPB2 1677 aa10.41□□□□□ -0.74
RNF4-220ENST00000513578 SPATA31A5Q5VU36 1347 aa10.4□□□□□ -0.74
RNF4-220ENST00000513578 SPATA31A7Q8IWB4 1347 aa10.4□□□□□ -0.74
RNF4-220ENST00000513578 RAB11FIP3O75154 756 aa10.4□□□□□ -0.74
RNF4-220ENST00000513578 PLEKHM2Q8IWE5 1019 aa10.4□□□□□ -0.74
RNF4-220ENST00000513578 DDRGK1Q96HY6 314 aa10.4□□□□□ -0.74
RNF4-220ENST00000513578 METTL22Q9BUU2 404 aaPredicted RBP10.4□□□□□ -0.74
RNF4-220ENST00000513578 RNF216Q9NWF9 866 aaPredicted RBP10.4□□□□□ -0.74
RNF4-220ENST00000513578 TMOD3Q9NYL9 352 aa10.4□□□□□ -0.74
RNF4-220ENST00000513578 ZBTB47Q9UFB7 747 aaPredicted RBP10.4□□□□□ -0.74
RNF4-220ENST00000513578 NEXNQ0ZGT2 675 aa10.39□□□□□ -0.75
RNF4-220ENST00000513578 ANKRD13DQ6ZTN6 518 aa10.39□□□□□ -0.75
RNF4-220ENST00000513578 COPS6Q7L5N1 327 aa10.39□□□□□ -0.75
RNF4-220ENST00000513578 PLBD2Q8NHP8 589 aa10.39□□□□□ -0.75
RNF4-220ENST00000513578 XAGE3Q8WTP9 111 aa10.39□□□□□ -0.75
RNF4-220ENST00000513578 NOP58Q9Y2X3 529 aaKnown RBP10.39□□□□□ -0.75
RNF4-220ENST00000513578 TJP1Q07157 1748 aa10.38□□□□□ -0.75
RNF4-220ENST00000513578 SPATA31A6Q5VVP1 1343 aa10.38□□□□□ -0.75
RNF4-220ENST00000513578 SALL3Q9BXA9 1300 aa10.38□□□□□ -0.75
RNF4-220ENST00000513578 RREB1Q92766 1687 aa10.38□□□□□ -0.75
RNF4-220ENST00000513578 PNMA6EA0A0J9YXQ4 647 aa10.38□□□□□ -0.75
RNF4-220ENST00000513578 GRM8O00222 908 aa10.38□□□□□ -0.75
RNF4-220ENST00000513578 NBPF7P0C2Y1 421 aaPredicted RBP10.38□□□□□ -0.75
RNF4-220ENST00000513578 HSP90AB4PQ58FF6 505 aa10.38□□□□□ -0.75
RNF4-220ENST00000513578 RIC3Q7Z5B4 369 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms