RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 BMP4P12644 408 aa7.43□□□□□ -1.22
NUP54-212ENST00000513248 HOXB4P17483 251 aaPredicted RBP7.43□□□□□ -1.22
NUP54-212ENST00000513248 BAG6P46379 1132 aa7.43□□□□□ -1.22
NUP54-212ENST00000513248 USP4Q13107 963 aa7.43□□□□□ -1.22
NUP54-212ENST00000513248 MAP7D1Q3KQU3 841 aa7.43□□□□□ -1.22
NUP54-212ENST00000513248 LINC00114Q6XXX2 140 aa7.43□□□□□ -1.22
NUP54-212ENST00000513248 PPARGC1BQ86YN6 1023 aaKnown RBP7.43□□□□□ -1.22
NUP54-212ENST00000513248 RUBCNLQ9H714 662 aa7.43□□□□□ -1.22
NUP54-212ENST00000513248 ARAFP10398 606 aa7.42□□□□□ -1.22
NUP54-212ENST00000513248 SKIP12755 728 aa7.42□□□□□ -1.22
NUP54-212ENST00000513248 FGFR3P22607 806 aa7.42□□□□□ -1.22
NUP54-212ENST00000513248 SRPK2P78362 688 aaKnown RBP7.42□□□□□ -1.22
NUP54-212ENST00000513248 FIGNL1Q6PIW4 674 aa7.42□□□□□ -1.22
NUP54-212ENST00000513248 C1orf216Q8TAB5 229 aa7.42□□□□□ -1.22
NUP54-212ENST00000513248 CALR3Q96L12 384 aaKnown RBP7.42□□□□□ -1.22
NUP54-212ENST00000513248 RRAGCQ9HB90 399 aa7.42□□□□□ -1.22
NUP54-212ENST00000513248 C2CD2LO14523 706 aa7.41□□□□□ -1.22
NUP54-212ENST00000513248 GNB5O14775 395 aa7.41□□□□□ -1.22
NUP54-212ENST00000513248 CFAP70Q5T0N1 1121 aa7.41□□□□□ -1.22
NUP54-212ENST00000513248 TBC1D9Q6ZT07 1266 aa7.41□□□□□ -1.22
NUP54-212ENST00000513248 SIRT1Q96EB6 747 aa7.41□□□□□ -1.22
NUP54-212ENST00000513248 ABHD17AQ96GS6 310 aa7.41□□□□□ -1.22
NUP54-212ENST00000513248 PPP1R12CQ9BZL4 782 aa7.41□□□□□ -1.22
NUP54-212ENST00000513248 GGA1Q9UJY5 639 aa7.41□□□□□ -1.22
NUP54-212ENST00000513248 BNIP3LO60238 219 aa7.4□□□□□ -1.22
NUP54-212ENST00000513248 EPXP11678 715 aa7.4□□□□□ -1.22
NUP54-212ENST00000513248 NLRP8Q86W28 1048 aa7.4□□□□□ -1.22
NUP54-212ENST00000513248 PLEKHM2Q8IWE5 1019 aa7.4□□□□□ -1.22
NUP54-212ENST00000513248 ETNK1Q9HBU6 452 aa7.4□□□□□ -1.22
NUP54-212ENST00000513248 PALM3A6NDB9 673 aaPredicted RBP7.39□□□□□ -1.23
NUP54-212ENST00000513248 USP17L5A8MUK1 530 aa7.39□□□□□ -1.23
NUP54-212ENST00000513248 ATP9BO43861 1147 aa7.39□□□□□ -1.23
NUP54-212ENST00000513248 AMPD1P23109 780 aa7.39□□□□□ -1.23
NUP54-212ENST00000513248 DGKGP49619 791 aa7.39□□□□□ -1.23
NUP54-212ENST00000513248 TLR1Q15399 786 aa7.39□□□□□ -1.23
NUP54-212ENST00000513248 CCDC82Q8N4S0 544 aa7.39□□□□□ -1.23
NUP54-212ENST00000513248 DNAAF2Q9NVR5 837 aaKnown RBP7.39□□□□□ -1.23
NUP54-212ENST00000513248 NOP53Q9NZM5 478 aaKnown RBP7.39□□□□□ -1.23
NUP54-212ENST00000513248 TFIP11Q9UBB9 837 aaKnown RBP7.39□□□□□ -1.23
NUP54-212ENST00000513248 SERPINA10Q9UK55 444 aa7.39□□□□□ -1.23
NUP54-212ENST00000513248 PCDHGC4Q9Y5F7 938 aa7.39□□□□□ -1.23
NUP54-212ENST00000513248 MAFBQ9Y5Q3 323 aaPredicted RBP7.39□□□□□ -1.23
NUP54-212ENST00000513248 CTBSQ01459 385 aa7.38□□□□□ -1.23
NUP54-212ENST00000513248 EML3Q32P44 896 aa7.38□□□□□ -1.23
NUP54-212ENST00000513248 FAM182BQ5T319 152 aa7.38□□□□□ -1.23
NUP54-212ENST00000513248 BTBD6Q96KE9 485 aa7.38□□□□□ -1.23
NUP54-212ENST00000513248 AVENQ9NQS1 362 aaPredicted RBP7.38□□□□□ -1.23
NUP54-212ENST00000513248 LZTS3O60299 673 aaPredicted RBP7.37□□□□□ -1.23
NUP54-212ENST00000513248 ATP4AP20648 1035 aa7.37□□□□□ -1.23
NUP54-212ENST00000513248 NCOA4Q13772 614 aa7.37□□□□□ -1.23
NUP54-212ENST00000513248 GRIN2CQ14957 1233 aa7.37□□□□□ -1.23
NUP54-212ENST00000513248 INHAP05111 366 aa7.36□□□□□ -1.23
NUP54-212ENST00000513248 KANK4Q5T7N3 995 aaPredicted RBP7.36□□□□□ -1.23
NUP54-212ENST00000513248 DEPDC4Q8N2C3 294 aa7.36□□□□□ -1.23
NUP54-212ENST00000513248 NIFKQ9BYG3 293 aaKnown RBP7.36□□□□□ -1.23
NUP54-212ENST00000513248 ZCCHC2Q9C0B9 1178 aaKnown RBP7.36□□□□□ -1.23
NUP54-212ENST00000513248 SUV39H2Q9H5I1 410 aa7.36□□□□□ -1.23
NUP54-212ENST00000513248 NOD1Q9Y239 953 aa7.36□□□□□ -1.23
NUP54-212ENST00000513248 USP17L3A6NCW0 530 aa7.35□□□□□ -1.23
NUP54-212ENST00000513248 USP17L4A6NCW7 530 aa7.35□□□□□ -1.23
NUP54-212ENST00000513248 STAU1O95793 577 aaKnown RBP7.35□□□□□ -1.23
NUP54-212ENST00000513248 PLA2G4AP47712 749 aa7.35□□□□□ -1.23
NUP54-212ENST00000513248 SCNN1DP51172 638 aa7.35□□□□□ -1.23
NUP54-212ENST00000513248 USP17L2Q6R6M4 530 aa7.35□□□□□ -1.23
NUP54-212ENST00000513248 USP17L1Q7RTZ2 530 aa7.35□□□□□ -1.23
NUP54-212ENST00000513248 NEURL1BA8MQ27 555 aa7.34□□□□□ -1.23
NUP54-212ENST00000513248 C1QTNF9BB2RNN3 333 aa7.34□□□□□ -1.23
NUP54-212ENST00000513248 FURINP09958 794 aa7.34□□□□□ -1.23
NUP54-212ENST00000513248 ADH6P28332 368 aa7.34□□□□□ -1.23
NUP54-212ENST00000513248 GDF10P55107 478 aa7.34□□□□□ -1.23
NUP54-212ENST00000513248 CD163Q86VB7 1156 aa7.34□□□□□ -1.23
NUP54-212ENST00000513248 Q8N3U1 123 aa7.34□□□□□ -1.23
NUP54-212ENST00000513248 ATXN7O15265 892 aaPredicted RBP7.33□□□□□ -1.24
NUP54-212ENST00000513248 DKK1O94907 266 aa7.33□□□□□ -1.24
NUP54-212ENST00000513248 SMTNP53814 917 aa7.33□□□□□ -1.24
NUP54-212ENST00000513248 GTF2IP78347 998 aa7.33□□□□□ -1.24
NUP54-212ENST00000513248 NBPF1Q3BBV0 1214 aa7.33□□□□□ -1.24
NUP54-212ENST00000513248 CHSY3Q70JA7 882 aa7.33□□□□□ -1.24
NUP54-212ENST00000513248 ZNF295-AS1Q8N0V1 137 aa7.33□□□□□ -1.24
NUP54-212ENST00000513248 ZDHHC3Q9NYG2 299 aa7.33□□□□□ -1.24
NUP54-212ENST00000513248 PCDHGA11Q9Y5H2 935 aa7.33□□□□□ -1.24
NUP54-212ENST00000513248 TNP2Q05952 138 aa7.32□□□□□ -1.24
NUP54-212ENST00000513248 PSME1Q06323 249 aa7.32□□□□□ -1.24
NUP54-212ENST00000513248 TRIM50Q86XT4 487 aa7.32□□□□□ -1.24
NUP54-212ENST00000513248 ZBTB7BO15156 539 aaPredicted RBP7.31□□□□□ -1.24
NUP54-212ENST00000513248 FAM157BP0CG42 384 aa7.31□□□□□ -1.24
NUP54-212ENST00000513248 MAPTP10636 758 aaKnown RBP7.31□□□□□ -1.24
NUP54-212ENST00000513248 MTFR1Q15390 333 aa7.31□□□□□ -1.24
NUP54-212ENST00000513248 SAMD5Q5TGI4 173 aa7.31□□□□□ -1.24
NUP54-212ENST00000513248 CCDC97Q96F63 343 aaPredicted RBP7.31□□□□□ -1.24
NUP54-212ENST00000513248 SLC4A9Q96Q91 983 aa7.31□□□□□ -1.24
NUP54-212ENST00000513248 A0A1W2PNR3 127 aa7.3□□□□□ -1.24
NUP54-212ENST00000513248 TMEM229AB2RXF0 380 aa7.3□□□□□ -1.24
NUP54-212ENST00000513248 CDK2AP1O14519 115 aa7.3□□□□□ -1.24
NUP54-212ENST00000513248 TATP17735 454 aaPredicted RBP7.3□□□□□ -1.24
NUP54-212ENST00000513248 LMOD1P29536 600 aaPredicted RBP7.3□□□□□ -1.24
NUP54-212ENST00000513248 CHRNA4P43681 627 aa7.3□□□□□ -1.24
NUP54-212ENST00000513248 ZNF468Q5VIY5 522 aaPredicted RBP7.3□□□□□ -1.24
NUP54-212ENST00000513248 FCHSD1Q86WN1 690 aa7.3□□□□□ -1.24
NUP54-212ENST00000513248 KLF15Q9UIH9 416 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms