RNA–Protein interactions for RNA: ENST00000508685.1

SH3RF1-203, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 2,020 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-203ENST00000508685 IFNL2Q8IZJ0 200 aa13.63□□□□□ -0.23
SH3RF1-203ENST00000508685 NFATC2IPQ8NCF5 419 aa13.63□□□□□ -0.23
SH3RF1-203ENST00000508685 SLC52A2Q9HAB3 445 aa13.63□□□□□ -0.23
SH3RF1-203ENST00000508685 SCN11AQ9UI33 1791 aa13.63□□□□□ -0.23
SH3RF1-203ENST00000508685 HEG1Q9ULI3 1381 aa13.63□□□□□ -0.23
SH3RF1-203ENST00000508685 PKD1L3Q7Z443 1732 aa13.63□□□□□ -0.23
SH3RF1-203ENST00000508685 RPAP2Q8IXW5 612 aaPredicted RBP13.63□□□□□ -0.23
SH3RF1-203ENST00000508685 LRP6O75581 1613 aa13.62□□□□□ -0.23
SH3RF1-203ENST00000508685 DCTPP1Q9H773 170 aa13.62□□□□□ -0.23
SH3RF1-203ENST00000508685 RTN4Q9NQC3 1192 aaKnown RBP13.62□□□□□ -0.23
SH3RF1-203ENST00000508685 PXDNLA1KZ92 1463 aa13.62□□□□□ -0.23
SH3RF1-203ENST00000508685 PROSER3Q2NL68 480 aa13.61□□□□□ -0.23
SH3RF1-203ENST00000508685 ZNF790Q6PG37 636 aa13.61□□□□□ -0.23
SH3RF1-203ENST00000508685 GOLGA6L3A6NEY3 463 aa13.61□□□□□ -0.23
SH3RF1-203ENST00000508685 STRN4Q9NRL3 753 aa13.61□□□□□ -0.23
SH3RF1-203ENST00000508685 N4BP2Q86UW6 1770 aaPredicted RBP13.6□□□□□ -0.23
SH3RF1-203ENST00000508685 PI4KAP2A4QPH2 592 aa13.6□□□□□ -0.23
SH3RF1-203ENST00000508685 APBB1O00213 710 aa13.6□□□□□ -0.23
SH3RF1-203ENST00000508685 PI4KAP1Q8N8J0 262 aa13.6□□□□□ -0.23
SH3RF1-203ENST00000508685 DBF4Q9UBU7 674 aaPredicted RBP13.6□□□□□ -0.23
SH3RF1-203ENST00000508685 COL22A1Q8NFW1 1626 aaPredicted RBP13.6□□□□□ -0.23
SH3RF1-203ENST00000508685 GNAI2P04899 355 aa13.59□□□□□ -0.23
SH3RF1-203ENST00000508685 LARP1Q6PKG0 1096 aaKnown RBP13.59□□□□□ -0.23
SH3RF1-203ENST00000508685 DCAF5Q96JK2 942 aa13.59□□□□□ -0.23
SH3RF1-203ENST00000508685 USP44Q9H0E7 712 aa13.59□□□□□ -0.23
SH3RF1-203ENST00000508685 PLEKHG2Q9H7P9 1386 aa13.59□□□□□ -0.23
SH3RF1-203ENST00000508685 MRC1P22897 1456 aa13.59□□□□□ -0.23
SH3RF1-203ENST00000508685 FSD2A1L4K1 749 aa13.59□□□□□ -0.23
SH3RF1-203ENST00000508685 ADAMTS2O95450 1211 aa13.59□□□□□ -0.23
SH3RF1-203ENST00000508685 RGS17Q9UGC6 210 aaPredicted RBP13.59□□□□□ -0.23
SH3RF1-203ENST00000508685 ADCY9O60503 1353 aa13.59□□□□□ -0.23
SH3RF1-203ENST00000508685 C5P01031 1676 aa13.58□□□□□ -0.24
SH3RF1-203ENST00000508685 GNAI3P08754 354 aa13.58□□□□□ -0.24
SH3RF1-203ENST00000508685 DDIT3P35638 169 aa13.58□□□□□ -0.24
SH3RF1-203ENST00000508685 SKOR2Q2VWA4 1001 aaPredicted RBP13.58□□□□□ -0.24
SH3RF1-203ENST00000508685 PARP4Q9UKK3 1724 aaKnown RBP13.58□□□□□ -0.24
SH3RF1-203ENST00000508685 TRAK2O60296 914 aa13.57□□□□□ -0.24
SH3RF1-203ENST00000508685 ZNF496Q96IT1 587 aaPredicted RBP13.57□□□□□ -0.24
SH3RF1-203ENST00000508685 GBP4Q96PP9 640 aa13.57□□□□□ -0.24
SH3RF1-203ENST00000508685 CHMP4AQ9BY43 222 aa13.57□□□□□ -0.24
SH3RF1-203ENST00000508685 LRRFIP2Q9Y608 721 aaKnown RBP13.57□□□□□ -0.24
SH3RF1-203ENST00000508685 PNMA6EA0A0J9YXQ4 647 aa13.57□□□□□ -0.24
SH3RF1-203ENST00000508685 SMARCA5O60264 1052 aaPredicted RBP13.57□□□□□ -0.24
SH3RF1-203ENST00000508685 C16orf71Q8IYS4 520 aaPredicted RBP13.57□□□□□ -0.24
SH3RF1-203ENST00000508685 DNAAF4Q8WXU2 420 aa13.57□□□□□ -0.24
SH3RF1-203ENST00000508685 C8orf37Q96NL8 207 aa13.57□□□□□ -0.24
SH3RF1-203ENST00000508685 SRCIN1Q9C0H9 1055 aa13.57□□□□□ -0.24
SH3RF1-203ENST00000508685 HMMRO75330 724 aa13.56□□□□□ -0.24
SH3RF1-203ENST00000508685 HSP90AB1P08238 724 aaKnown RBP13.56□□□□□ -0.24
SH3RF1-203ENST00000508685 BEND3Q5T5X7 828 aa13.56□□□□□ -0.24
SH3RF1-203ENST00000508685 ZCRB1Q8TBF4 217 aaKnown RBP13.56□□□□□ -0.24
SH3RF1-203ENST00000508685 OTUD7AQ8TE49 926 aaPredicted RBP13.56□□□□□ -0.24
SH3RF1-203ENST00000508685 CARD10Q9BWT7 1032 aa13.56□□□□□ -0.24
SH3RF1-203ENST00000508685 PCDH11XQ9BZA7 1347 aa13.56□□□□□ -0.24
SH3RF1-203ENST00000508685 PCDH11YQ9BZA8 1340 aa13.56□□□□□ -0.24
SH3RF1-203ENST00000508685 CDC45O75419 566 aa13.56□□□□□ -0.24
SH3RF1-203ENST00000508685 NBPF7P0C2Y1 421 aaPredicted RBP13.56□□□□□ -0.24
SH3RF1-203ENST00000508685 UBTFL1P0CB47 393 aaPredicted RBP13.56□□□□□ -0.24
SH3RF1-203ENST00000508685 MRE11P49959 708 aa13.56□□□□□ -0.24
SH3RF1-203ENST00000508685 EVA1CP58658 441 aa13.56□□□□□ -0.24
SH3RF1-203ENST00000508685 PDIA6Q15084 440 aa13.56□□□□□ -0.24
SH3RF1-203ENST00000508685 NGLY1Q96IV0 654 aa13.56□□□□□ -0.24
SH3RF1-203ENST00000508685 EXOC6BQ9Y2D4 811 aa13.56□□□□□ -0.24
SH3RF1-203ENST00000508685 IL2RBP14784 551 aa13.55□□□□□ -0.24
SH3RF1-203ENST00000508685 CABP4P57796 275 aa13.55□□□□□ -0.24
SH3RF1-203ENST00000508685 ZNF772Q68DY9 489 aaPredicted RBP13.55□□□□□ -0.24
SH3RF1-203ENST00000508685 PLEKHM2Q8IWE5 1019 aa13.55□□□□□ -0.24
SH3RF1-203ENST00000508685 TTC5Q8N0Z6 440 aa13.55□□□□□ -0.24
SH3RF1-203ENST00000508685 BTG4Q9NY30 223 aa13.55□□□□□ -0.24
SH3RF1-203ENST00000508685 MAP3K2Q9Y2U5 619 aa13.55□□□□□ -0.24
SH3RF1-203ENST00000508685 ILDR2Q71H61 639 aa13.54□□□□□ -0.24
SH3RF1-203ENST00000508685 SPRYD3Q8NCJ5 442 aa13.54□□□□□ -0.24
SH3RF1-203ENST00000508685 AFF2P51816 1311 aa13.54□□□□□ -0.24
SH3RF1-203ENST00000508685 MYL6BP14649 208 aa13.54□□□□□ -0.24
SH3RF1-203ENST00000508685 GSPT1P15170 499 aaKnown RBP13.54□□□□□ -0.24
SH3RF1-203ENST00000508685 AIMP1Q12904 312 aaKnown RBP13.54□□□□□ -0.24
SH3RF1-203ENST00000508685 DDX54Q8TDD1 881 aaKnown RBP13.54□□□□□ -0.24
SH3RF1-203ENST00000508685 DDX21Q9NR30 783 aaKnown RBP eCLIP13.54□□□□□ -0.24
SH3RF1-203ENST00000508685 HYPKQ9NX55 129 aa13.54□□□□□ -0.24
SH3RF1-203ENST00000508685 SHANK3Q9BYB0 1731 aa13.53□□□□□ -0.24
SH3RF1-203ENST00000508685 PIP4K2AP48426 406 aaPredicted RBP13.53□□□□□ -0.24
SH3RF1-203ENST00000508685 POTEAQ6S8J7 498 aa13.53□□□□□ -0.24
SH3RF1-203ENST00000508685 USP16Q9Y5T5 823 aa13.53□□□□□ -0.24
SH3RF1-203ENST00000508685 K7ELQ4 463 aaPredicted RBP13.52□□□□□ -0.24
SH3RF1-203ENST00000508685 ATP8B2P98198 1209 aa13.52□□□□□ -0.24
SH3RF1-203ENST00000508685 RAB3GAP1Q15042 981 aa13.52□□□□□ -0.24
SH3RF1-203ENST00000508685 CWF19L2Q2TBE0 894 aaKnown RBP13.52□□□□□ -0.24
SH3RF1-203ENST00000508685 KSR2Q6VAB6 950 aa13.52□□□□□ -0.24
SH3RF1-203ENST00000508685 TBC1D9Q6ZT07 1266 aa13.52□□□□□ -0.24
SH3RF1-203ENST00000508685 GLI3P10071 1580 aa13.52□□□□□ -0.24
SH3RF1-203ENST00000508685 HSP90AA1P07900 732 aaKnown RBP13.52□□□□□ -0.25
SH3RF1-203ENST00000508685 XRCC6P12956 609 aaKnown RBP eCLIP13.52□□□□□ -0.25
SH3RF1-203ENST00000508685 FMNL2Q96PY5 1086 aa13.52□□□□□ -0.25
SH3RF1-203ENST00000508685 SNRPA1P09661 255 aaKnown RBP13.51□□□□□ -0.25
SH3RF1-203ENST00000508685 KIF2CQ99661 725 aa13.51□□□□□ -0.25
SH3RF1-203ENST00000508685 GOLGA6L22H0YM25 854 aa13.51□□□□□ -0.25
SH3RF1-203ENST00000508685 RABEP1Q15276 862 aa13.51□□□□□ -0.25
SH3RF1-203ENST00000508685 CASC1Q6TDU7 716 aa13.51□□□□□ -0.25
SH3RF1-203ENST00000508685 CLEC17AQ6ZS10 378 aa13.51□□□□□ -0.25
SH3RF1-203ENST00000508685 FNBP4Q8N3X1 1017 aaPredicted RBP13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms