RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 FKBP5Q13451 457 aaPredicted RBP19.71■□□□□ 0.75
MSH5-SAPCD1-208ENST00000498473 TSHZ3Q63HK5 1081 aa19.71■□□□□ 0.75
MSH5-SAPCD1-208ENST00000498473 ZGPATQ8N5A5 531 aaKnown RBP19.71■□□□□ 0.75
MSH5-SAPCD1-208ENST00000498473 CWC22Q9HCG8 908 aaKnown RBP19.71■□□□□ 0.75
MSH5-SAPCD1-208ENST00000498473 NECTIN2Q92692 538 aa19.7■□□□□ 0.74
MSH5-SAPCD1-208ENST00000498473 AXIN2Q9Y2T1 843 aa19.7■□□□□ 0.74
MSH5-SAPCD1-208ENST00000498473 MAP3K5Q99683 1374 aa19.7■□□□□ 0.74
MSH5-SAPCD1-208ENST00000498473 RGPD5Q99666 1765 aa19.7■□□□□ 0.74
MSH5-SAPCD1-208ENST00000498473 LRRCC1Q9C099 1032 aa19.7■□□□□ 0.74
MSH5-SAPCD1-208ENST00000498473 IBTKQ9P2D0 1353 aaPredicted RBP19.69■□□□□ 0.74
MSH5-SAPCD1-208ENST00000498473 SOS1Q07889 1333 aaPredicted RBP19.69■□□□□ 0.74
MSH5-SAPCD1-208ENST00000498473 ZDHHC9Q9Y397 364 aa19.68■□□□□ 0.74
MSH5-SAPCD1-208ENST00000498473 DDX49Q9Y6V7 483 aaKnown RBP19.68■□□□□ 0.74
MSH5-SAPCD1-208ENST00000498473 PHRF1Q9P1Y6 1649 aaKnown RBP19.68■□□□□ 0.74
MSH5-SAPCD1-208ENST00000498473 CLCN1P35523 988 aa19.68■□□□□ 0.74
MSH5-SAPCD1-208ENST00000498473 MCTP1Q6DN14 999 aa19.68■□□□□ 0.74
MSH5-SAPCD1-208ENST00000498473 ESYT1Q9BSJ8 1104 aa19.68■□□□□ 0.74
MSH5-SAPCD1-208ENST00000498473 LMBRD1Q9NUN5 540 aa19.68■□□□□ 0.74
MSH5-SAPCD1-208ENST00000498473 MX1P20591 662 aa19.67■□□□□ 0.74
MSH5-SAPCD1-208ENST00000498473 TAF7Q15545 349 aaPredicted RBP19.67■□□□□ 0.74
MSH5-SAPCD1-208ENST00000498473 BABAM1Q9NWV8 329 aa19.67■□□□□ 0.74
MSH5-SAPCD1-208ENST00000498473 PXDNLA1KZ92 1463 aa19.67■□□□□ 0.74
MSH5-SAPCD1-208ENST00000498473 NFAT5O94916 1531 aa19.67■□□□□ 0.74
MSH5-SAPCD1-208ENST00000498473 USP44Q9H0E7 712 aa19.67■□□□□ 0.74
MSH5-SAPCD1-208ENST00000498473 STAP2Q9UGK3 403 aa19.67■□□□□ 0.74
MSH5-SAPCD1-208ENST00000498473 LRRFIP2Q9Y608 721 aaKnown RBP19.67■□□□□ 0.74
MSH5-SAPCD1-208ENST00000498473 CRYBG1Q9Y4K1 1723 aa19.66■□□□□ 0.74
MSH5-SAPCD1-208ENST00000498473 USHBP1Q8N6Y0 703 aa19.65■□□□□ 0.74
MSH5-SAPCD1-208ENST00000498473 ABCA3Q99758 1704 aa19.65■□□□□ 0.74
MSH5-SAPCD1-208ENST00000498473 CHMLP26374 656 aa19.64■□□□□ 0.74
MSH5-SAPCD1-208ENST00000498473 ERBB4Q15303 1308 aa19.64■□□□□ 0.73
MSH5-SAPCD1-208ENST00000498473 PALD1Q9ULE6 856 aa19.63■□□□□ 0.73
MSH5-SAPCD1-208ENST00000498473 NEK4P51957 841 aa19.63■□□□□ 0.73
MSH5-SAPCD1-208ENST00000498473 PHAXQ9H814 394 aaKnown RBP19.63■□□□□ 0.73
MSH5-SAPCD1-208ENST00000498473 PRDM11Q9NQV5 511 aa19.63■□□□□ 0.73
MSH5-SAPCD1-208ENST00000498473 RGPD2P0DJD1 1756 aa19.62■□□□□ 0.73
MSH5-SAPCD1-208ENST00000498473 ZNF445P59923 1031 aa19.62■□□□□ 0.73
MSH5-SAPCD1-208ENST00000498473 ARHGEF25Q86VW2 580 aa19.62■□□□□ 0.73
MSH5-SAPCD1-208ENST00000498473 UNC5CLQ8IV45 518 aa19.62■□□□□ 0.73
MSH5-SAPCD1-208ENST00000498473 TMX3Q96JJ7 454 aa19.62■□□□□ 0.73
MSH5-SAPCD1-208ENST00000498473 SLIT3O75094 1523 aa19.62■□□□□ 0.73
MSH5-SAPCD1-208ENST00000498473 KCNH5Q8NCM2 988 aa19.61■□□□□ 0.73
MSH5-SAPCD1-208ENST00000498473 SSH3Q8TE77 659 aa19.61■□□□□ 0.73
MSH5-SAPCD1-208ENST00000498473 ESPNB1AK53 854 aa19.61■□□□□ 0.73
MSH5-SAPCD1-208ENST00000498473 IL17RAQ96F46 866 aa19.61■□□□□ 0.73
MSH5-SAPCD1-208ENST00000498473 SRCIN1Q9C0H9 1055 aa19.61■□□□□ 0.73
MSH5-SAPCD1-208ENST00000498473 STRN4Q9NRL3 753 aa19.61■□□□□ 0.73
MSH5-SAPCD1-208ENST00000498473 CEMIPQ8WUJ3 1361 aa19.61■□□□□ 0.73
MSH5-SAPCD1-208ENST00000498473 EP400Q96L91 3159 aa19.61■□□□□ 0.73
MSH5-SAPCD1-208ENST00000498473 HDGFL1Q5TGJ6 251 aa19.6■□□□□ 0.73
MSH5-SAPCD1-208ENST00000498473 RILPL2Q969X0 211 aa19.6■□□□□ 0.73
MSH5-SAPCD1-208ENST00000498473 UBTFL1P0CB47 393 aaPredicted RBP19.6■□□□□ 0.73
MSH5-SAPCD1-208ENST00000498473 AOX1Q06278 1338 aa19.6■□□□□ 0.73
MSH5-SAPCD1-208ENST00000498473 TRIM6-TRIM34B2RNG4 842 aa19.59■□□□□ 0.73
MSH5-SAPCD1-208ENST00000498473 ANAPC15P60006 121 aa19.59■□□□□ 0.73
MSH5-SAPCD1-208ENST00000498473 CUL4AQ13619 759 aa19.59■□□□□ 0.73
MSH5-SAPCD1-208ENST00000498473 PPP1R9BQ96SB3 815 aa19.59■□□□□ 0.73
MSH5-SAPCD1-208ENST00000498473 POLA2Q14181 598 aa19.59■□□□□ 0.73
MSH5-SAPCD1-208ENST00000498473 ZSCAN23Q3MJ62 389 aa19.59■□□□□ 0.73
MSH5-SAPCD1-208ENST00000498473 CAVIN1Q6NZI2 390 aaKnown RBP19.59■□□□□ 0.73
MSH5-SAPCD1-208ENST00000498473 GPT2Q8TD30 523 aa19.59■□□□□ 0.73
MSH5-SAPCD1-208ENST00000498473 CHAMP1Q96JM3 812 aa19.59■□□□□ 0.73
MSH5-SAPCD1-208ENST00000498473 C8orf37Q96NL8 207 aa19.59■□□□□ 0.73
MSH5-SAPCD1-208ENST00000498473 RRP9O43818 475 aaKnown RBP19.58■□□□□ 0.73
MSH5-SAPCD1-208ENST00000498473 PRPF40AO75400 957 aaKnown RBP19.58■□□□□ 0.73
MSH5-SAPCD1-208ENST00000498473 NASPP49321 788 aaPredicted RBP19.58■□□□□ 0.73
MSH5-SAPCD1-208ENST00000498473 MCM2P49736 904 aa19.58■□□□□ 0.73
MSH5-SAPCD1-208ENST00000498473 KDM3BQ7LBC6 1761 aa19.58■□□□□ 0.73
MSH5-SAPCD1-208ENST00000498473 IL25Q9H293 177 aa19.58■□□□□ 0.73
MSH5-SAPCD1-208ENST00000498473 IL1RAPL2Q9NP60 686 aa19.57■□□□□ 0.72
MSH5-SAPCD1-208ENST00000498473 ANO2Q9NQ90 1003 aa19.57■□□□□ 0.72
MSH5-SAPCD1-208ENST00000498473 MCCP23508 829 aa19.57■□□□□ 0.72
MSH5-SAPCD1-208ENST00000498473 EIF4A1P60842 406 aaKnown RBP19.57■□□□□ 0.72
MSH5-SAPCD1-208ENST00000498473 PPP1R42Q7Z4L9 355 aa19.57■□□□□ 0.72
MSH5-SAPCD1-208ENST00000498473 IP6K1Q92551 441 aa19.57■□□□□ 0.72
MSH5-SAPCD1-208ENST00000498473 NCLP19338 710 aaKnown RBP19.56■□□□□ 0.72
MSH5-SAPCD1-208ENST00000498473 CCDC173Q0VFZ6 552 aa19.56■□□□□ 0.72
MSH5-SAPCD1-208ENST00000498473 LGR6Q9HBX8 967 aa19.56■□□□□ 0.72
MSH5-SAPCD1-208ENST00000498473 BTG4Q9NY30 223 aa19.56■□□□□ 0.72
MSH5-SAPCD1-208ENST00000498473 LRP6O75581 1613 aa19.56■□□□□ 0.72
MSH5-SAPCD1-208ENST00000498473 NBPF6Q5VWK0 638 aa19.56■□□□□ 0.72
MSH5-SAPCD1-208ENST00000498473 NUTM1Q86Y26 1132 aa19.56■□□□□ 0.72
MSH5-SAPCD1-208ENST00000498473 TRIM44Q96DX7 344 aaPredicted RBP19.56■□□□□ 0.72
MSH5-SAPCD1-208ENST00000498473 NBPF4Q96M43 638 aa19.56■□□□□ 0.72
MSH5-SAPCD1-208ENST00000498473 RAB11FIP3O75154 756 aa19.55■□□□□ 0.72
MSH5-SAPCD1-208ENST00000498473 JCADQ9P266 1359 aa19.55■□□□□ 0.72
MSH5-SAPCD1-208ENST00000498473 BRD1O95696 1058 aa19.55■□□□□ 0.72
MSH5-SAPCD1-208ENST00000498473 ANKRD24Q8TF21 1146 aa19.55■□□□□ 0.72
MSH5-SAPCD1-208ENST00000498473 CSB-PGBD3P0DP91 1061 aa19.54■□□□□ 0.72
MSH5-SAPCD1-208ENST00000498473 PI4K2BQ8TCG2 481 aa19.54■□□□□ 0.72
MSH5-SAPCD1-208ENST00000498473 RBM27Q9P2N5 1060 aaKnown RBP19.54■□□□□ 0.72
MSH5-SAPCD1-208ENST00000498473 CAMTA1Q9Y6Y1 1673 aa19.54■□□□□ 0.72
MSH5-SAPCD1-208ENST00000498473 SURF6O75683 361 aaKnown RBP19.53■□□□□ 0.72
MSH5-SAPCD1-208ENST00000498473 EIF2S2P20042 333 aaKnown RBP19.53■□□□□ 0.72
MSH5-SAPCD1-208ENST00000498473 RHPN1Q8TCX5 695 aa19.53■□□□□ 0.72
MSH5-SAPCD1-208ENST00000498473 INTS4Q96HW7 963 aaKnown RBP19.53■□□□□ 0.72
MSH5-SAPCD1-208ENST00000498473 EPB41L2O43491 1005 aaKnown RBP19.53■□□□□ 0.72
MSH5-SAPCD1-208ENST00000498473 KCNQ3O43525 872 aa19.53■□□□□ 0.72
MSH5-SAPCD1-208ENST00000498473 NBPF7P0C2Y1 421 aaPredicted RBP19.53■□□□□ 0.72
MSH5-SAPCD1-208ENST00000498473 BEND3Q5T5X7 828 aa19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms