RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 SLC24A1O60721 1099 aa9.82□□□□□ -0.84
VPS50-219ENST00000495039 SMTNP53814 917 aa9.82□□□□□ -0.84
VPS50-219ENST00000495039 NBPF1Q3BBV0 1214 aa9.82□□□□□ -0.84
VPS50-219ENST00000495039 XP32Q5T750 250 aa9.82□□□□□ -0.84
VPS50-219ENST00000495039 SUV39H2Q9H5I1 410 aa9.82□□□□□ -0.84
VPS50-219ENST00000495039 NEURL1BA8MQ27 555 aa9.81□□□□□ -0.84
VPS50-219ENST00000495039 PLPP7Q8NBV4 271 aa9.81□□□□□ -0.84
VPS50-219ENST00000495039 NOP53Q9NZM5 478 aaKnown RBP9.81□□□□□ -0.84
VPS50-219ENST00000495039 ADH6P28332 368 aa9.8□□□□□ -0.84
VPS50-219ENST00000495039 DGKGP49619 791 aa9.8□□□□□ -0.84
VPS50-219ENST00000495039 WASHC4Q2M389 1173 aa9.8□□□□□ -0.84
VPS50-219ENST00000495039 TATP17735 454 aaPredicted RBP9.79□□□□□ -0.84
VPS50-219ENST00000495039 ABL2P42684 1182 aa9.79□□□□□ -0.84
VPS50-219ENST00000495039 ARSJQ5FYB0 599 aaPredicted RBP9.79□□□□□ -0.84
VPS50-219ENST00000495039 FAM182BQ5T319 152 aa9.79□□□□□ -0.84
VPS50-219ENST00000495039 GDPD2Q9HCC8 539 aa9.79□□□□□ -0.84
VPS50-219ENST00000495039 AVENQ9NQS1 362 aaPredicted RBP9.79□□□□□ -0.84
VPS50-219ENST00000495039 A0A1W2PNR3 127 aa9.78□□□□□ -0.84
VPS50-219ENST00000495039 DCDC2BA2VCK2 349 aa9.78□□□□□ -0.84
VPS50-219ENST00000495039 MAPTP10636 758 aaKnown RBP9.78□□□□□ -0.84
VPS50-219ENST00000495039 SOX11P35716 441 aa9.78□□□□□ -0.84
VPS50-219ENST00000495039 TNP2Q05952 138 aa9.78□□□□□ -0.84
VPS50-219ENST00000495039 SEMA3FQ13275 785 aa9.78□□□□□ -0.84
VPS50-219ENST00000495039 ZDHHC3Q9NYG2 299 aa9.78□□□□□ -0.84
VPS50-219ENST00000495039 SERTAD1Q9UHV2 236 aa9.78□□□□□ -0.84
VPS50-219ENST00000495039 KHNYNO15037 678 aaKnown RBP9.77□□□□□ -0.85
VPS50-219ENST00000495039 CHSY3Q70JA7 882 aa9.77□□□□□ -0.85
VPS50-219ENST00000495039 SLC4A9Q96Q91 983 aa9.77□□□□□ -0.85
VPS50-219ENST00000495039 A6NJY4 79 aa9.76□□□□□ -0.85
VPS50-219ENST00000495039 CDK2AP1O14519 115 aa9.76□□□□□ -0.85
VPS50-219ENST00000495039 FURINP09958 794 aa9.76□□□□□ -0.85
VPS50-219ENST00000495039 CD33P20138 364 aa9.76□□□□□ -0.85
VPS50-219ENST00000495039 MTFR1Q15390 333 aa9.76□□□□□ -0.85
VPS50-219ENST00000495039 ZNF295-AS1Q8N0V1 137 aa9.76□□□□□ -0.85
VPS50-219ENST00000495039 GJA3Q9Y6H8 435 aa9.76□□□□□ -0.85
VPS50-219ENST00000495039 C1QTNF9BB2RNN3 333 aa9.75□□□□□ -0.85
VPS50-219ENST00000495039 TMEM229AB2RXF0 380 aa9.75□□□□□ -0.85
VPS50-219ENST00000495039 FAM157BP0CG42 384 aa9.75□□□□□ -0.85
VPS50-219ENST00000495039 CABP1Q9NZU7 370 aa9.75□□□□□ -0.85
VPS50-219ENST00000495039 IQSEC3Q9UPP2 1182 aaPredicted RBP9.75□□□□□ -0.85
VPS50-219ENST00000495039 CD163Q86VB7 1156 aa9.74□□□□□ -0.85
VPS50-219ENST00000495039 FCHSD1Q86WN1 690 aa9.74□□□□□ -0.85
VPS50-219ENST00000495039 ZNF468Q5VIY5 522 aaPredicted RBP9.73□□□□□ -0.85
VPS50-219ENST00000495039 ZIC5Q96T25 663 aa9.73□□□□□ -0.85
VPS50-219ENST00000495039 KLF15Q9UIH9 416 aa9.73□□□□□ -0.85
VPS50-219ENST00000495039 HCN2Q9UL51 889 aa9.73□□□□□ -0.85
VPS50-219ENST00000495039 PRR12Q9ULL5 1215 aa9.73□□□□□ -0.85
VPS50-219ENST00000495039 CHRNA4P43681 627 aa9.72□□□□□ -0.85
VPS50-219ENST00000495039 SAMD5Q5TGI4 173 aa9.72□□□□□ -0.85
VPS50-219ENST00000495039 USP3Q9Y6I4 520 aa9.72□□□□□ -0.85
VPS50-219ENST00000495039 BACH1O14867 736 aa9.71□□□□□ -0.86
VPS50-219ENST00000495039 LAMC2Q13753 1193 aa9.71□□□□□ -0.86
VPS50-219ENST00000495039 EML3Q32P44 896 aa9.71□□□□□ -0.86
VPS50-219ENST00000495039 BICDL1Q6ZP65 573 aa9.71□□□□□ -0.86
VPS50-219ENST00000495039 MARK1Q9P0L2 795 aa9.71□□□□□ -0.86
VPS50-219ENST00000495039 PCDHGA11Q9Y5H2 935 aa9.71□□□□□ -0.86
VPS50-219ENST00000495039 PCBP4P57723 403 aaKnown RBP9.7□□□□□ -0.86
VPS50-219ENST00000495039 Q8N3U1 123 aa9.69□□□□□ -0.86
VPS50-219ENST00000495039 NOD1Q9Y239 953 aa9.69□□□□□ -0.86
VPS50-219ENST00000495039 PIK3CDO00329 1044 aa9.68□□□□□ -0.86
VPS50-219ENST00000495039 EFSO43281 561 aa9.68□□□□□ -0.86
VPS50-219ENST00000495039 LZTS3O60299 673 aaPredicted RBP9.68□□□□□ -0.86
VPS50-219ENST00000495039 MCM6Q14566 821 aa9.68□□□□□ -0.86
VPS50-219ENST00000495039 PARP3Q9Y6F1 533 aa9.68□□□□□ -0.86
VPS50-219ENST00000495039 STRN4Q9NRL3 753 aa9.67□□□□□ -0.86
VPS50-219ENST00000495039 SCHIP1Q9P0W5 487 aaPredicted RBP9.67□□□□□ -0.86
VPS50-219ENST00000495039 ELOA3CA0A087WX78 387 aaPredicted RBP9.66□□□□□ -0.86
VPS50-219ENST00000495039 ELOA3DA6NLF2 546 aaPredicted RBP9.66□□□□□ -0.86
VPS50-219ENST00000495039 SPATA31C1P0DKV0 1188 aa9.66□□□□□ -0.86
VPS50-219ENST00000495039 SKIP12755 728 aa9.66□□□□□ -0.86
VPS50-219ENST00000495039 TXLNAP40222 546 aa9.66□□□□□ -0.86
VPS50-219ENST00000495039 GTF2IP78347 998 aa9.66□□□□□ -0.86
VPS50-219ENST00000495039 PSME1Q06323 249 aa9.66□□□□□ -0.86
VPS50-219ENST00000495039 ELOA3BQ3SY89 546 aa9.66□□□□□ -0.86
VPS50-219ENST00000495039 TPRNQ4KMQ1 711 aa9.66□□□□□ -0.86
VPS50-219ENST00000495039 ELOA3Q8NG57 546 aa9.66□□□□□ -0.86
VPS50-219ENST00000495039 TRIM11Q96F44 468 aa9.66□□□□□ -0.86
VPS50-219ENST00000495039 PLVAPQ9BX97 442 aa9.66□□□□□ -0.86
VPS50-219ENST00000495039 ZNF358Q9NW07 568 aa9.66□□□□□ -0.86
VPS50-219ENST00000495039 SPDYE3A6NKU9 549 aa9.65□□□□□ -0.86
VPS50-219ENST00000495039 ALAS2P22557 587 aa9.65□□□□□ -0.86
VPS50-219ENST00000495039 NFATC2IPQ8NCF5 419 aa9.65□□□□□ -0.86
VPS50-219ENST00000495039 TEAD4Q15561 434 aa9.64□□□□□ -0.87
VPS50-219ENST00000495039 SYT9Q86SS6 491 aa9.64□□□□□ -0.87
VPS50-219ENST00000495039 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.64□□□□□ -0.87
VPS50-219ENST00000495039 ZDHHC1Q8WTX9 485 aa9.64□□□□□ -0.87
VPS50-219ENST00000495039 L3MBTL2Q969R5 705 aa9.64□□□□□ -0.87
VPS50-219ENST00000495039 GPC6Q9Y625 555 aaPredicted RBP9.64□□□□□ -0.87
VPS50-219ENST00000495039 NCOA4Q13772 614 aa9.63□□□□□ -0.87
VPS50-219ENST00000495039 EML1O00423 815 aa9.62□□□□□ -0.87
VPS50-219ENST00000495039 NOS2P35228 1153 aa9.62□□□□□ -0.87
VPS50-219ENST00000495039 GATA4P43694 442 aa9.62□□□□□ -0.87
VPS50-219ENST00000495039 DOC2BQ14184 412 aa9.62□□□□□ -0.87
VPS50-219ENST00000495039 LRRC69Q6ZNQ3 347 aa9.62□□□□□ -0.87
VPS50-219ENST00000495039 WWC1Q8IX03 1113 aa9.62□□□□□ -0.87
VPS50-219ENST00000495039 NEUROD4Q9HD90 331 aa9.62□□□□□ -0.87
VPS50-219ENST00000495039 ZNF232Q9UNY5 417 aa9.62□□□□□ -0.87
VPS50-219ENST00000495039 COG6Q9Y2V7 657 aa9.62□□□□□ -0.87
VPS50-219ENST00000495039 SIN3BO75182 1162 aa9.61□□□□□ -0.87
VPS50-219ENST00000495039 EPHA4P54764 986 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms