RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, human

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-223	ENST00000494123	USP16	Q9Y5T5	823 aa		18.82	■□□□□ 0.6
BRCA1-223	ENST00000494123	HOXB7	P09629	217 aa		18.81	■□□□□ 0.6
BRCA1-223	ENST00000494123	EIF2S2	P20042	333 aa	Known RBP	18.81	■□□□□ 0.6
BRCA1-223	ENST00000494123	CRKL	P46109	303 aa	Known RBP	18.81	■□□□□ 0.6
BRCA1-223	ENST00000494123	AK7	Q96M32	723 aa		18.81	■□□□□ 0.6
BRCA1-223	ENST00000494123	CNTNAP4	Q9C0A0	1308 aa		18.8	■□□□□ 0.6
BRCA1-223	ENST00000494123	TWISTNB	Q3B726	338 aa	Predicted RBP	18.8	■□□□□ 0.6
BRCA1-223	ENST00000494123	STK32B	Q9NY57	414 aa		18.8	■□□□□ 0.6
BRCA1-223	ENST00000494123	SOS1	Q07889	1333 aa	Predicted RBP	18.79	■□□□□ 0.6
BRCA1-223	ENST00000494123	TRMT2A	Q8IZ69	625 aa	Known RBP	18.79	■□□□□ 0.6
BRCA1-223	ENST00000494123	CCDC87	Q9NVE4	849 aa		18.79	■□□□□ 0.6
BRCA1-223	ENST00000494123	RC3H1	Q5TC82	1133 aa	Known RBP	18.78	■□□□□ 0.6
BRCA1-223	ENST00000494123	HDGFL1	Q5TGJ6	251 aa		18.78	■□□□□ 0.6
BRCA1-223	ENST00000494123	TSPYL6	Q8N831	410 aa		18.78	■□□□□ 0.6
BRCA1-223	ENST00000494123	NECTIN2	Q92692	538 aa		18.78	■□□□□ 0.6
BRCA1-223	ENST00000494123	CHMP4A	Q9BY43	222 aa		18.78	■□□□□ 0.6
BRCA1-223	ENST00000494123	GNPAT	O15228	680 aa		18.78	■□□□□ 0.6
BRCA1-223	ENST00000494123	TFCP2L1	Q9NZI6	479 aa		18.78	■□□□□ 0.6
BRCA1-223	ENST00000494123	MYH14	Q7Z406	1995 aa	Known RBP	18.77	■□□□□ 0.6
BRCA1-223	ENST00000494123	A1BG	P04217	495 aa		18.77	■□□□□ 0.6
BRCA1-223	ENST00000494123	CANX	P27824	592 aa	Known RBP	18.77	■□□□□ 0.6
BRCA1-223	ENST00000494123	SLC15A2	Q16348	729 aa		18.77	■□□□□ 0.6
BRCA1-223	ENST00000494123	ZNF827	Q17R98	1081 aa		18.77	■□□□□ 0.6
BRCA1-223	ENST00000494123	AKT1S1	Q96B36	256 aa		18.77	■□□□□ 0.6
BRCA1-223	ENST00000494123	ANO8	Q9HCE9	1232 aa	Predicted RBP	18.77	■□□□□ 0.6
BRCA1-223	ENST00000494123	INTS5	Q6P9B9	1019 aa	Known RBP	18.76	■□□□□ 0.59
BRCA1-223	ENST00000494123	ZBTB1	Q9Y2K1	713 aa		18.76	■□□□□ 0.59
BRCA1-223	ENST00000494123	NPM2	Q86SE8	214 aa	Known RBP	18.75	■□□□□ 0.59
BRCA1-223	ENST00000494123	RTCB	Q9Y3I0	505 aa	Known RBP	18.75	■□□□□ 0.59
BRCA1-223	ENST00000494123	ZNF330	Q9Y3S2	320 aa	Predicted RBP	18.75	■□□□□ 0.59
BRCA1-223	ENST00000494123	UBR3	Q6ZT12	1888 aa		18.75	■□□□□ 0.59
BRCA1-223	ENST00000494123	ERBB4	Q15303	1308 aa		18.75	■□□□□ 0.59
BRCA1-223	ENST00000494123	PIP4K2A	P48426	406 aa	Predicted RBP	18.74	■□□□□ 0.59
BRCA1-223	ENST00000494123	CCDC30	Q5VVM6	783 aa		18.74	■□□□□ 0.59
BRCA1-223	ENST00000494123	VAMP4	O75379	141 aa		18.74	■□□□□ 0.59
BRCA1-223	ENST00000494123	RPS6KA4	O75676	772 aa		18.74	■□□□□ 0.59
BRCA1-223	ENST00000494123	PHF14	O94880	888 aa		18.74	■□□□□ 0.59
BRCA1-223	ENST00000494123	TUBGCP6	Q96RT7	1819 aa		18.74	■□□□□ 0.59
BRCA1-223	ENST00000494123	MYL6B	P14649	208 aa		18.73	■□□□□ 0.59
BRCA1-223	ENST00000494123	STK31	Q9BXU1	1019 aa		18.73	■□□□□ 0.59
BRCA1-223	ENST00000494123	IL6ST	P40189	918 aa	Predicted RBP	18.72	■□□□□ 0.59
BRCA1-223	ENST00000494123	CHPF2	Q9P2E5	772 aa		18.72	■□□□□ 0.59
BRCA1-223	ENST00000494123	DBF4	Q9UBU7	674 aa	Predicted RBP	18.72	■□□□□ 0.59
BRCA1-223	ENST00000494123	QSER1	Q2KHR3	1735 aa		18.72	■□□□□ 0.59
BRCA1-223	ENST00000494123	NBPF26	B4DH59	902 aa		18.71	■□□□□ 0.59
BRCA1-223	ENST00000494123	CT47B1	P0C2W7	299 aa	Predicted RBP	18.71	■□□□□ 0.59
BRCA1-223	ENST00000494123	SSFA2	P28290	1259 aa		18.71	■□□□□ 0.59
BRCA1-223	ENST00000494123	NBPF10	Q6P3W6	841 aa	Known RBP	18.71	■□□□□ 0.59
BRCA1-223	ENST00000494123	NBPF15	Q8N660	670 aa		18.71	■□□□□ 0.59
BRCA1-223	ENST00000494123	FLAD1	Q8NFF5	587 aa		18.71	■□□□□ 0.59
BRCA1-223	ENST00000494123	COL15A1	P39059	1388 aa		18.71	■□□□□ 0.58
BRCA1-223	ENST00000494123	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	18.71	■□□□□ 0.58
BRCA1-223	ENST00000494123	MSH5	O43196	834 aa		18.71	■□□□□ 0.58
BRCA1-223	ENST00000494123	TRAPPC3L	Q5T215	181 aa		18.71	■□□□□ 0.58
BRCA1-223	ENST00000494123	ARX	Q96QS3	562 aa		18.71	■□□□□ 0.58
BRCA1-223	ENST00000494123	DDX21	Q9NR30	783 aa	Known RBP eCLIP	18.71	■□□□□ 0.58
BRCA1-223	ENST00000494123	TCERG1	O14776	1098 aa	Known RBP	18.7	■□□□□ 0.58
BRCA1-223	ENST00000494123	ADRA2B	P18089	450 aa		18.7	■□□□□ 0.58
BRCA1-223	ENST00000494123	R3HDM1	Q15032	1099 aa	Known RBP	18.7	■□□□□ 0.58
BRCA1-223	ENST00000494123	SMIM5	Q71RC9	77 aa		18.7	■□□□□ 0.58
BRCA1-223	ENST00000494123		A0A087WZG4	1122 aa		18.69	■□□□□ 0.58
BRCA1-223	ENST00000494123	ANXA1	P04083	346 aa		18.69	■□□□□ 0.58
BRCA1-223	ENST00000494123	EIF5	P55010	431 aa	Known RBP	18.69	■□□□□ 0.58
BRCA1-223	ENST00000494123	PDIA6	Q15084	440 aa		18.69	■□□□□ 0.58
BRCA1-223	ENST00000494123	AMIGO3	Q86WK7	504 aa		18.69	■□□□□ 0.58
BRCA1-223	ENST00000494123	ZNF428	Q96B54	188 aa		18.69	■□□□□ 0.58
BRCA1-223	ENST00000494123	PNPLA7	Q6ZV29	1317 aa		18.69	■□□□□ 0.58
BRCA1-223	ENST00000494123	PROSER3	Q2NL68	480 aa		18.68	■□□□□ 0.58
BRCA1-223	ENST00000494123	HYPK	Q9NX55	129 aa		18.68	■□□□□ 0.58
BRCA1-223	ENST00000494123	PSD	A5PKW4	1024 aa	Predicted RBP	18.67	■□□□□ 0.58
BRCA1-223	ENST00000494123	C4A	P0C0L4	1744 aa		18.67	■□□□□ 0.58
BRCA1-223	ENST00000494123	RFC4	P35249	363 aa		18.67	■□□□□ 0.58
BRCA1-223	ENST00000494123	ARHGEF1	Q92888	912 aa	Known RBP	18.67	■□□□□ 0.58
BRCA1-223	ENST00000494123	SLC4A2	P04920	1241 aa		18.67	■□□□□ 0.58
BRCA1-223	ENST00000494123	COL23A1	Q86Y22	540 aa	Predicted RBP	18.67	■□□□□ 0.58
BRCA1-223	ENST00000494123	CACNA1F	O60840	1977 aa		18.67	■□□□□ 0.58
BRCA1-223	ENST00000494123	DZIP3	Q86Y13	1208 aa	Known RBP	18.66	■□□□□ 0.58
BRCA1-223	ENST00000494123	ZPR1	O75312	459 aa		18.65	■□□□□ 0.58
BRCA1-223	ENST00000494123	AIMP1	Q12904	312 aa	Known RBP	18.65	■□□□□ 0.58
BRCA1-223	ENST00000494123	ALDH1L2	Q3SY69	923 aa		18.65	■□□□□ 0.58
BRCA1-223	ENST00000494123	KIF6	Q6ZMV9	814 aa		18.65	■□□□□ 0.58
BRCA1-223	ENST00000494123	TBC1D2B	Q9UPU7	963 aa		18.65	■□□□□ 0.58
BRCA1-223	ENST00000494123	COPS6	Q7L5N1	327 aa		18.64	■□□□□ 0.57
BRCA1-223	ENST00000494123	XAGE3	Q8WTP9	111 aa		18.64	■□□□□ 0.57
BRCA1-223	ENST00000494123	SMC4	Q9NTJ3	1288 aa		18.64	■□□□□ 0.57
BRCA1-223	ENST00000494123	LRP10	Q7Z4F1	713 aa		18.63	■□□□□ 0.57
BRCA1-223	ENST00000494123	SSH1	Q8WYL5	1049 aa		18.63	■□□□□ 0.57
BRCA1-223	ENST00000494123	BCL2L13	Q9BXK5	485 aa		18.63	■□□□□ 0.57
BRCA1-223	ENST00000494123	PHAX	Q9H814	394 aa	Known RBP	18.63	■□□□□ 0.57
BRCA1-223	ENST00000494123	NARF	Q9UHQ1	456 aa		18.63	■□□□□ 0.57
BRCA1-223	ENST00000494123	RARS	P54136	660 aa	Known RBP	18.62	■□□□□ 0.57
BRCA1-223	ENST00000494123	USPL1	Q5W0Q7	1092 aa		18.62	■□□□□ 0.57
BRCA1-223	ENST00000494123	TTLL7	Q6ZT98	887 aa		18.62	■□□□□ 0.57
BRCA1-223	ENST00000494123	SRP68	Q9UHB9	627 aa	Known RBP	18.62	■□□□□ 0.57
BRCA1-223	ENST00000494123	USP42	Q9H9J4	1324 aa	Known RBP	18.62	■□□□□ 0.57
BRCA1-223	ENST00000494123	SCN7A	Q01118	1682 aa		18.62	■□□□□ 0.57
BRCA1-223	ENST00000494123	CASZ1	Q86V15	1759 aa		18.62	■□□□□ 0.57
BRCA1-223	ENST00000494123	PDGFD	Q9GZP0	370 aa	Predicted RBP	18.61	■□□□□ 0.57
BRCA1-223	ENST00000494123	BCOR	Q6W2J9	1755 aa		18.61	■□□□□ 0.57
BRCA1-223	ENST00000494123	DDX58	O95786	925 aa	Known RBP	18.6	■□□□□ 0.57

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