RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 PDCL2Q8N4E4 241 aa22.32■■□□□ 1.16
COL27A1-207ENST00000494090 MAPKBP1O60336 1514 aa22.32■■□□□ 1.16
COL27A1-207ENST00000494090 SLF2Q8IX21 1173 aa22.32■■□□□ 1.16
COL27A1-207ENST00000494090 PIP4K2BP78356 416 aa22.32■■□□□ 1.16
COL27A1-207ENST00000494090 MAP3K12Q12852 859 aa22.32■■□□□ 1.16
COL27A1-207ENST00000494090 IDI1Q13907 227 aa22.32■■□□□ 1.16
COL27A1-207ENST00000494090 PHF8Q9UPP1 1060 aa22.32■■□□□ 1.16
COL27A1-207ENST00000494090 USP5P45974 858 aa22.32■■□□□ 1.16
COL27A1-207ENST00000494090 ARHGAP45Q92619 1136 aa22.32■■□□□ 1.16
COL27A1-207ENST00000494090 CTAGE5O15320 804 aa22.31■■□□□ 1.16
COL27A1-207ENST00000494090 POTEJP0CG39 1038 aa22.31■■□□□ 1.16
COL27A1-207ENST00000494090 EVI5LQ96CN4 794 aa22.31■■□□□ 1.16
COL27A1-207ENST00000494090 MBIPQ9NS73 344 aa22.31■■□□□ 1.16
COL27A1-207ENST00000494090 SFPQP23246 707 aaKnown RBP eCLIP22.31■■□□□ 1.162e-8■□□□□ 8.2
COL27A1-207ENST00000494090 TTC22Q5TAA0 569 aa22.31■■□□□ 1.16
COL27A1-207ENST00000494090 EPB41L2O43491 1005 aaKnown RBP22.31■■□□□ 1.16
COL27A1-207ENST00000494090 IFIT5Q13325 482 aaKnown RBP22.31■■□□□ 1.16
COL27A1-207ENST00000494090 CCDC85AQ96PX6 553 aaPredicted RBP22.3■■□□□ 1.16
COL27A1-207ENST00000494090 POLR3DP05423 398 aaPredicted RBP22.3■■□□□ 1.16
COL27A1-207ENST00000494090 CCDC8Q9H0W5 538 aaPredicted RBP22.3■■□□□ 1.16
COL27A1-207ENST00000494090 WDHD1O75717 1129 aaPredicted RBP22.3■■□□□ 1.16
COL27A1-207ENST00000494090 SKIDA1Q1XH10 827 aa22.3■■□□□ 1.16
COL27A1-207ENST00000494090 NAPBQ9H115 298 aa22.3■■□□□ 1.16
COL27A1-207ENST00000494090 RNF41Q9H4P4 317 aaPredicted RBP22.3■■□□□ 1.16
COL27A1-207ENST00000494090 SLC5A1P13866 664 aa22.29■■□□□ 1.16
COL27A1-207ENST00000494090 THOC2Q8NI27 1593 aaKnown RBP22.29■■□□□ 1.16
COL27A1-207ENST00000494090 PTPN14Q15678 1187 aa22.29■■□□□ 1.16
COL27A1-207ENST00000494090 CRACR2BQ8N4Y2 399 aaPredicted RBP22.29■■□□□ 1.16
COL27A1-207ENST00000494090 UBXN4Q92575 508 aa22.29■■□□□ 1.16
COL27A1-207ENST00000494090 C8orf76Q96K31 380 aa22.29■■□□□ 1.16
COL27A1-207ENST00000494090 TEX13AQ9BXU3 409 aaPredicted RBP22.29■■□□□ 1.16
COL27A1-207ENST00000494090 EIF5P55010 431 aaKnown RBP22.29■■□□□ 1.16
COL27A1-207ENST00000494090 NUCB1Q02818 461 aa22.29■■□□□ 1.16
COL27A1-207ENST00000494090 MKNK2Q9HBH9 465 aa22.29■■□□□ 1.16
COL27A1-207ENST00000494090 ECHDC1Q9NTX5 307 aa22.29■■□□□ 1.16
COL27A1-207ENST00000494090 ZNF397Q8NF99 534 aaPredicted RBP22.29■■□□□ 1.16
COL27A1-207ENST00000494090 BICRAQ9NZM4 1560 aa22.28■■□□□ 1.16
COL27A1-207ENST00000494090 USHBP1Q8N6Y0 703 aa22.28■■□□□ 1.16
COL27A1-207ENST00000494090 CTCFLQ8NI51 663 aaPredicted RBP22.28■■□□□ 1.16
COL27A1-207ENST00000494090 PTCD1O75127 700 aaKnown RBP22.28■■□□□ 1.16
COL27A1-207ENST00000494090 RAB34Q9BZG1 259 aa22.28■■□□□ 1.16
COL27A1-207ENST00000494090 TSPYL1Q9H0U9 437 aa22.28■■□□□ 1.16
COL27A1-207ENST00000494090 DDX19AQ9NUU7 478 aaKnown RBP22.28■■□□□ 1.16
COL27A1-207ENST00000494090 CETN2P41208 172 aa22.28■■□□□ 1.16
COL27A1-207ENST00000494090 ARHGAP29Q52LW3 1261 aa22.28■■□□□ 1.16
COL27A1-207ENST00000494090 SPINK5Q9NQ38 1064 aaPredicted RBP22.28■■□□□ 1.16
COL27A1-207ENST00000494090 ZSCAN12O43309 604 aa22.27■■□□□ 1.16
COL27A1-207ENST00000494090 TAF4BQ92750 862 aa22.27■■□□□ 1.16
COL27A1-207ENST00000494090 BAG4O95429 457 aaKnown RBP22.27■■□□□ 1.16
COL27A1-207ENST00000494090 PEG3Q9GZU2 1588 aa22.27■■□□□ 1.16
COL27A1-207ENST00000494090 GPATCH8Q9UKJ3 1502 aaKnown RBP22.27■■□□□ 1.16
COL27A1-207ENST00000494090 JAKMIP3Q5VZ66 844 aa22.27■■□□□ 1.16
COL27A1-207ENST00000494090 ASXL1Q8IXJ9 1541 aa22.27■■□□□ 1.16
COL27A1-207ENST00000494090 DZIP1Q86YF9 867 aaKnown RBP22.27■■□□□ 1.16
COL27A1-207ENST00000494090 IQCA1Q86XH1 822 aa22.27■■□□□ 1.15
COL27A1-207ENST00000494090 SEPT11Q9NVA2 429 aaKnown RBP22.26■■□□□ 1.15
COL27A1-207ENST00000494090 MATR3P43243 847 aaKnown RBP eCLIP22.26■■□□□ 1.159e-7■■□□□ 11.7
COL27A1-207ENST00000494090 MPRIPQ6WCQ1 1025 aa22.26■■□□□ 1.15
COL27A1-207ENST00000494090 GOLGA6L7A0A1B0GV03 622 aa22.25■■□□□ 1.15
COL27A1-207ENST00000494090 STX6O43752 255 aa22.25■■□□□ 1.15
COL27A1-207ENST00000494090 ANKRD18BA2A2Z9 1011 aa22.25■■□□□ 1.15
COL27A1-207ENST00000494090 KLHL40Q2TBA0 621 aa22.25■■□□□ 1.15
COL27A1-207ENST00000494090 CLIP2Q9UDT6 1046 aa22.25■■□□□ 1.15
COL27A1-207ENST00000494090 NUP160Q12769 1436 aa22.25■■□□□ 1.15
COL27A1-207ENST00000494090 KIF20AO95235 890 aa22.25■■□□□ 1.15
COL27A1-207ENST00000494090 MCM5P33992 734 aa22.24■■□□□ 1.15
COL27A1-207ENST00000494090 PIK3R4Q99570 1358 aa22.24■■□□□ 1.15
COL27A1-207ENST00000494090 PPP4R3AQ6IN85 833 aa22.24■■□□□ 1.15
COL27A1-207ENST00000494090 KIF18AQ8NI77 898 aa22.24■■□□□ 1.15
COL27A1-207ENST00000494090 EZRP15311 586 aaKnown RBP22.24■■□□□ 1.15
COL27A1-207ENST00000494090 GJB2P29033 226 aa22.24■■□□□ 1.15
COL27A1-207ENST00000494090 AMOTL2Q9Y2J4 779 aa22.24■■□□□ 1.15
COL27A1-207ENST00000494090 UGGT2Q9NYU1 1516 aa22.24■■□□□ 1.15
COL27A1-207ENST00000494090 KIAA1328Q86T90 577 aa22.24■■□□□ 1.15
COL27A1-207ENST00000494090 TSG101Q99816 390 aa22.24■■□□□ 1.15
COL27A1-207ENST00000494090 USP25Q9UHP3 1055 aa22.23■■□□□ 1.15
COL27A1-207ENST00000494090 TRMT112Q9UI30 125 aaKnown RBP22.23■■□□□ 1.15
COL27A1-207ENST00000494090 PTPRKQ15262 1439 aa22.23■■□□□ 1.15
COL27A1-207ENST00000494090 NEMFO60524 1076 aa22.23■■□□□ 1.15
COL27A1-207ENST00000494090 FGFR1OPO95684 399 aaKnown RBP22.23■■□□□ 1.15
COL27A1-207ENST00000494090 EHMT1Q9H9B1 1298 aa22.23■■□□□ 1.15
COL27A1-207ENST00000494090 PARD3Q8TEW0 1356 aa22.23■■□□□ 1.15
COL27A1-207ENST00000494090 ZNF213O14771 459 aa22.23■■□□□ 1.15
COL27A1-207ENST00000494090 FBXO31Q5XUX0 539 aaPredicted RBP22.23■■□□□ 1.15
COL27A1-207ENST00000494090 ZNF444Q8N0Y2 327 aaPredicted RBP22.23■■□□□ 1.15
COL27A1-207ENST00000494090 CCDC148Q8NFR7 591 aa22.23■■□□□ 1.15
COL27A1-207ENST00000494090 ANKIB1Q9P2G1 1089 aa22.23■■□□□ 1.15
COL27A1-207ENST00000494090 MINDY4BA8MYZ0 360 aa22.23■■□□□ 1.15
COL27A1-207ENST00000494090 KIAA0754O94854 1291 aa22.22■■□□□ 1.15
COL27A1-207ENST00000494090 TMEM266Q2M3C6 531 aa22.21■■□□□ 1.15
COL27A1-207ENST00000494090 UVSSAQ2YD98 709 aa22.21■■□□□ 1.15
COL27A1-207ENST00000494090 TMCO3Q6UWJ1 677 aa22.21■■□□□ 1.15
COL27A1-207ENST00000494090 GBP3Q9H0R5 595 aa22.21■■□□□ 1.15
COL27A1-207ENST00000494090 URB2Q14146 1524 aaKnown RBP22.21■■□□□ 1.15
COL27A1-207ENST00000494090 NEBLO76041 1014 aa22.21■■□□□ 1.15
COL27A1-207ENST00000494090 FKBP15Q5T1M5 1219 aa22.21■■□□□ 1.15
COL27A1-207ENST00000494090 CUL5Q93034 780 aa22.21■■□□□ 1.15
COL27A1-207ENST00000494090 FANCAO15360 1455 aa22.21■■□□□ 1.15
COL27A1-207ENST00000494090 TOP1P11387 765 aaKnown RBP22.21■■□□□ 1.15
COL27A1-207ENST00000494090 TTF1Q15361 905 aaPredicted RBP22.21■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms