RNA–Protein interactions for RNA: ENST00000493923.1

HDAC6-234, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 404 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-234ENST00000493923 SLC52A2Q9HAB3 445 aa10.93□□□□□ -0.66
HDAC6-234ENST00000493923 RTCBQ9Y3I0 505 aaKnown RBP10.93□□□□□ -0.66
HDAC6-234ENST00000493923 FANCIQ9NVI1 1328 aa10.92□□□□□ -0.66
HDAC6-234ENST00000493923 TRAPPC3LQ5T215 181 aa10.92□□□□□ -0.66
HDAC6-234ENST00000493923 PXDNLA1KZ92 1463 aa10.92□□□□□ -0.66
HDAC6-234ENST00000493923 ATXN8OSP0DMR3 200 aa10.91□□□□□ -0.66
HDAC6-234ENST00000493923 DDR1Q08345 913 aa10.91□□□□□ -0.66
HDAC6-234ENST00000493923 FKBP8Q14318 412 aa10.91□□□□□ -0.66
HDAC6-234ENST00000493923 PHACTR3Q96KR7 559 aa10.91□□□□□ -0.66
HDAC6-234ENST00000493923 SIPA1L3O60292 1781 aaPredicted RBP10.9□□□□□ -0.66
HDAC6-234ENST00000493923 UBR2Q8IWV8 1755 aa10.9□□□□□ -0.66
HDAC6-234ENST00000493923 A0A0G2JLW4 131 aa10.9□□□□□ -0.66
HDAC6-234ENST00000493923 U2SURPO15042 1029 aaKnown RBP10.9□□□□□ -0.66
HDAC6-234ENST00000493923 IL17REQ8NFR9 667 aa10.9□□□□□ -0.66
HDAC6-234ENST00000493923 C10orf71Q711Q0 1435 aa10.9□□□□□ -0.66
HDAC6-234ENST00000493923 BRCA1P38398 1863 aaKnown RBP10.89□□□□□ -0.67
HDAC6-234ENST00000493923 KCNQ3O43525 872 aa10.89□□□□□ -0.67
HDAC6-234ENST00000493923 GRIN3BO60391 1043 aa10.89□□□□□ -0.67
HDAC6-234ENST00000493923 CYP19A1P11511 503 aaPredicted RBP10.89□□□□□ -0.67
HDAC6-234ENST00000493923 ATP10DQ9P241 1426 aa10.89□□□□□ -0.67
HDAC6-234ENST00000493923 SOS1Q07889 1333 aaPredicted RBP10.88□□□□□ -0.67
HDAC6-234ENST00000493923 USP42Q9H9J4 1324 aaKnown RBP10.88□□□□□ -0.67
HDAC6-234ENST00000493923 DPEP1P16444 411 aa10.88□□□□□ -0.67
HDAC6-234ENST00000493923 KCNA3P22001 575 aa10.88□□□□□ -0.67
HDAC6-234ENST00000493923 PPP2R1AP30153 589 aa10.88□□□□□ -0.67
HDAC6-234ENST00000493923 RFC4P35249 363 aa10.88□□□□□ -0.67
HDAC6-234ENST00000493923 RSPH6AQ9H0K4 717 aa10.88□□□□□ -0.67
HDAC6-234ENST00000493923 CCDC87Q9NVE4 849 aa10.88□□□□□ -0.67
HDAC6-234ENST00000493923 ZBTB1Q9Y2K1 713 aa10.88□□□□□ -0.67
HDAC6-234ENST00000493923 CEP350Q5VT06 3117 aa10.88□□□□□ -0.67
HDAC6-234ENST00000493923 ADCY9O60503 1353 aa10.88□□□□□ -0.67
HDAC6-234ENST00000493923 AFDNP55196 1824 aaKnown RBP10.87□□□□□ -0.67
HDAC6-234ENST00000493923 HMGB2P26583 209 aaKnown RBP10.87□□□□□ -0.67
HDAC6-234ENST00000493923 NLGN1Q8N2Q7 840 aa10.87□□□□□ -0.67
HDAC6-234ENST00000493923 BCL2L12Q9HB09 334 aa10.87□□□□□ -0.67
HDAC6-234ENST00000493923 NEFLP07196 543 aa10.86□□□□□ -0.67
HDAC6-234ENST00000493923 TM4SF1P30408 202 aa10.86□□□□□ -0.67
HDAC6-234ENST00000493923 PRKAR2BP31323 418 aa10.86□□□□□ -0.67
HDAC6-234ENST00000493923 C1QTNF8P60827 252 aa10.86□□□□□ -0.67
HDAC6-234ENST00000493923 USPL1Q5W0Q7 1092 aa10.86□□□□□ -0.67
HDAC6-234ENST00000493923 UBE2Q2Q8WVN8 375 aa10.86□□□□□ -0.67
HDAC6-234ENST00000493923 ZNF496Q96IT1 587 aaPredicted RBP10.86□□□□□ -0.67
HDAC6-234ENST00000493923 RBM19Q9Y4C8 960 aaKnown RBP10.86□□□□□ -0.67
HDAC6-234ENST00000493923 POLRMTO00411 1230 aaKnown RBP10.85□□□□□ -0.67
HDAC6-234ENST00000493923 CHRNA5P30532 468 aa10.85□□□□□ -0.67
HDAC6-234ENST00000493923 ZNF526Q8TF50 670 aaPredicted RBP10.85□□□□□ -0.67
HDAC6-234ENST00000493923 PRAMEF22A3QJZ6 481 aa10.84□□□□□ -0.67
HDAC6-234ENST00000493923 GNAT3A8MTJ3 354 aa10.84□□□□□ -0.67
HDAC6-234ENST00000493923 CANXP27824 592 aaKnown RBP10.84□□□□□ -0.67
HDAC6-234ENST00000493923 DCTN1Q14203 1278 aa10.84□□□□□ -0.67
HDAC6-234ENST00000493923 BCS1LQ9Y276 419 aa10.84□□□□□ -0.67
HDAC6-234ENST00000493923 PARP3Q9Y6F1 533 aa10.84□□□□□ -0.67
HDAC6-234ENST00000493923 COL15A1P39059 1388 aa10.84□□□□□ -0.67
HDAC6-234ENST00000493923 CEMIPQ8WUJ3 1361 aa10.84□□□□□ -0.67
HDAC6-234ENST00000493923 CARMIL3Q8ND23 1372 aa10.83□□□□□ -0.68
HDAC6-234ENST00000493923 PIP4K2AP48426 406 aaPredicted RBP10.83□□□□□ -0.68
HDAC6-234ENST00000493923 TGFB2P61812 414 aa10.83□□□□□ -0.68
HDAC6-234ENST00000493923 NFIXQ14938 502 aa10.83□□□□□ -0.68
HDAC6-234ENST00000493923 MCM10Q7L590 875 aa10.83□□□□□ -0.68
HDAC6-234ENST00000493923 ARFGEF1Q9Y6D6 1849 aa10.83□□□□□ -0.68
HDAC6-234ENST00000493923 NRXN2Q9P2S2 1712 aa10.83□□□□□ -0.68
HDAC6-234ENST00000493923 HEG1Q9ULI3 1381 aa10.82□□□□□ -0.68
HDAC6-234ENST00000493923 GIGYF1O75420 1035 aaPredicted RBP10.82□□□□□ -0.68
HDAC6-234ENST00000493923 A1BGP04217 495 aa10.82□□□□□ -0.68
HDAC6-234ENST00000493923 U2AF1L5P0DN76 240 aaPredicted RBP10.82□□□□□ -0.68
HDAC6-234ENST00000493923 EIF5P55010 431 aaKnown RBP10.82□□□□□ -0.68
HDAC6-234ENST00000493923 U2AF1Q01081 240 aaKnown RBP eCLIP10.82□□□□□ -0.68
HDAC6-234ENST00000493923 ZNF790Q6PG37 636 aa10.82□□□□□ -0.68
HDAC6-234ENST00000493923 GAS2L2Q8NHY3 880 aa10.82□□□□□ -0.68
HDAC6-234ENST00000493923 NARFQ9UHQ1 456 aa10.82□□□□□ -0.68
HDAC6-234ENST00000493923 DLG5Q8TDM6 1919 aa10.82□□□□□ -0.68
HDAC6-234ENST00000493923 ANKRD31Q8N7Z5 1873 aa10.81□□□□□ -0.68
HDAC6-234ENST00000493923 SENP3-EIF4A1A0A087X0R7 540 aa10.81□□□□□ -0.68
HDAC6-234ENST00000493923 FCHSD2O94868 740 aa10.81□□□□□ -0.68
HDAC6-234ENST00000493923 TEFQ10587 303 aa10.81□□□□□ -0.68
HDAC6-234ENST00000493923 VSIG10Q8N0Z9 540 aa10.81□□□□□ -0.68
HDAC6-234ENST00000493923 CCDC24Q8N4L8 307 aa10.81□□□□□ -0.68
HDAC6-234ENST00000493923 ZPR1O75312 459 aa10.8□□□□□ -0.68
HDAC6-234ENST00000493923 PRELPP51888 382 aa10.8□□□□□ -0.68
HDAC6-234ENST00000493923 BICDL1Q6ZP65 573 aa10.8□□□□□ -0.68
HDAC6-234ENST00000493923 ARHGAP27Q6ZUM4 889 aa10.8□□□□□ -0.68
HDAC6-234ENST00000493923 TTC5Q8N0Z6 440 aa10.8□□□□□ -0.68
HDAC6-234ENST00000493923 CFAP53Q96M91 514 aa10.8□□□□□ -0.68
HDAC6-234ENST00000493923 TBC1D2BQ9UPU7 963 aa10.8□□□□□ -0.68
HDAC6-234ENST00000493923 USP16Q9Y5T5 823 aa10.8□□□□□ -0.68
HDAC6-234ENST00000493923 SBF1O95248 1867 aa10.8□□□□□ -0.68
HDAC6-234ENST00000493923 SCN7AQ01118 1682 aa10.79□□□□□ -0.68
HDAC6-234ENST00000493923 KIF3CO14782 793 aa10.79□□□□□ -0.68
HDAC6-234ENST00000493923 SERPINB2P05120 415 aa10.79□□□□□ -0.68
HDAC6-234ENST00000493923 TBC1D9BQ66K14 1250 aa10.79□□□□□ -0.68
HDAC6-234ENST00000493923 CHRDL2Q6WN34 429 aa10.79□□□□□ -0.68
HDAC6-234ENST00000493923 MIS18AQ9NYP9 233 aa10.79□□□□□ -0.68
HDAC6-234ENST00000493923 COL11A2P13942 1736 aaPredicted RBP10.78□□□□□ -0.68
HDAC6-234ENST00000493923 DLEC1Q9Y238 1755 aa10.78□□□□□ -0.68
HDAC6-234ENST00000493923 BTBD11A6QL63 1104 aa10.78□□□□□ -0.68
HDAC6-234ENST00000493923 GPBP1L1Q9HC44 474 aaPredicted RBP10.78□□□□□ -0.68
HDAC6-234ENST00000493923 PIM2Q9P1W9 311 aa10.78□□□□□ -0.68
HDAC6-234ENST00000493923 ZNF330Q9Y3S2 320 aaPredicted RBP10.78□□□□□ -0.68
HDAC6-234ENST00000493923 BCORQ6W2J9 1755 aa10.77□□□□□ -0.68
HDAC6-234ENST00000493923 NBPF26B4DH59 902 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms