RNA–Protein interactions for RNA: ENST00000493455.6

HPS4-216, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 986 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-216ENST00000493455 C4BP0C0L5 1744 aa20.33■□□□□ 0.84
HPS4-216ENST00000493455 HDGFL1Q5TGJ6 251 aa20.32■□□□□ 0.84
HPS4-216ENST00000493455 ZNF330Q9Y3S2 320 aaPredicted RBP20.32■□□□□ 0.84
HPS4-216ENST00000493455 CICQ96RK0 1608 aaPredicted RBP20.31■□□□□ 0.84
HPS4-216ENST00000493455 STARD3NLO95772 234 aa20.31■□□□□ 0.84
HPS4-216ENST00000493455 TEX13AQ9BXU3 409 aaPredicted RBP20.31■□□□□ 0.84
HPS4-216ENST00000493455 MYH14Q7Z406 1995 aaKnown RBP20.3■□□□□ 0.84
HPS4-216ENST00000493455 CANXP27824 592 aaKnown RBP20.3■□□□□ 0.84
HPS4-216ENST00000493455 CRKLP46109 303 aaKnown RBP20.3■□□□□ 0.84
HPS4-216ENST00000493455 A1BGP04217 495 aa20.29■□□□□ 0.84
HPS4-216ENST00000493455 CYP19A1P11511 503 aaPredicted RBP20.29■□□□□ 0.84
HPS4-216ENST00000493455 AK7Q96M32 723 aa20.29■□□□□ 0.84
HPS4-216ENST00000493455 ANXA1P04083 346 aa20.28■□□□□ 0.84
HPS4-216ENST00000493455 MYL6BP14649 208 aa20.28■□□□□ 0.84
HPS4-216ENST00000493455 CCDC87Q9NVE4 849 aa20.28■□□□□ 0.84
HPS4-216ENST00000493455 GNPATO15228 680 aa20.27■□□□□ 0.84
HPS4-216ENST00000493455 VAMP4O75379 141 aa20.27■□□□□ 0.84
HPS4-216ENST00000493455 HOXB7P09629 217 aa20.27■□□□□ 0.84
HPS4-216ENST00000493455 ZBTB1Q9Y2K1 713 aa20.27■□□□□ 0.84
HPS4-216ENST00000493455 TUBGCP6Q96RT7 1819 aa20.27■□□□□ 0.84
HPS4-216ENST00000493455 PHF14O94880 888 aa20.26■□□□□ 0.83
HPS4-216ENST00000493455 SMIM5Q71RC9 77 aa20.26■□□□□ 0.83
HPS4-216ENST00000493455 ARXQ96QS3 562 aa20.26■□□□□ 0.83
HPS4-216ENST00000493455 BCL2L13Q9BXK5 485 aa20.26■□□□□ 0.83
HPS4-216ENST00000493455 CHPF2Q9P2E5 772 aa20.26■□□□□ 0.83
HPS4-216ENST00000493455 ZNF827Q17R98 1081 aa20.25■□□□□ 0.83
HPS4-216ENST00000493455 CCDC30Q5VVM6 783 aa20.25■□□□□ 0.83
HPS4-216ENST00000493455 STK31Q9BXU1 1019 aa20.25■□□□□ 0.83
HPS4-216ENST00000493455 STK32BQ9NY57 414 aa20.25■□□□□ 0.83
HPS4-216ENST00000493455 CNTNAP4Q9C0A0 1308 aa20.25■□□□□ 0.83
HPS4-216ENST00000493455 UBR3Q6ZT12 1888 aa20.24■□□□□ 0.83
HPS4-216ENST00000493455 PROSER3Q2NL68 480 aa20.24■□□□□ 0.83
HPS4-216ENST00000493455 INTS5Q6P9B9 1019 aaKnown RBP20.24■□□□□ 0.83
HPS4-216ENST00000493455 NPM2Q86SE8 214 aaKnown RBP20.24■□□□□ 0.83
HPS4-216ENST00000493455 ANO8Q9HCE9 1232 aaPredicted RBP20.24■□□□□ 0.83
HPS4-216ENST00000493455 TFCP2L1Q9NZI6 479 aa20.24■□□□□ 0.83
HPS4-216ENST00000493455 SOS1Q07889 1333 aaPredicted RBP20.23■□□□□ 0.83
HPS4-216ENST00000493455 NBPF26B4DH59 902 aa20.22■□□□□ 0.83
HPS4-216ENST00000493455 NBPF14Q5TI25 921 aa20.22■□□□□ 0.83
HPS4-216ENST00000493455 NBPF10Q6P3W6 841 aaKnown RBP20.22■□□□□ 0.83
HPS4-216ENST00000493455 NBPF15Q8N660 670 aa20.22■□□□□ 0.83
HPS4-216ENST00000493455 MSH5O43196 834 aa20.21■□□□□ 0.83
HPS4-216ENST00000493455 AIMP1Q12904 312 aaKnown RBP20.21■□□□□ 0.83
HPS4-216ENST00000493455 SMC4Q9NTJ3 1288 aa20.21■□□□□ 0.83
HPS4-216ENST00000493455 DBF4Q9UBU7 674 aaPredicted RBP20.21■□□□□ 0.83
HPS4-216ENST00000493455 RTCBQ9Y3I0 505 aaKnown RBP20.21■□□□□ 0.83
HPS4-216ENST00000493455 SOCS7O14512 581 aa20.2■□□□□ 0.82
HPS4-216ENST00000493455 SLC4A2P04920 1241 aa20.2■□□□□ 0.82
HPS4-216ENST00000493455 CT47B1P0C2W7 299 aaPredicted RBP20.2■□□□□ 0.82
HPS4-216ENST00000493455 HMGB2P26583 209 aaKnown RBP20.2■□□□□ 0.82
HPS4-216ENST00000493455 RC3H1Q5TC82 1133 aaKnown RBP20.2■□□□□ 0.82
HPS4-216ENST00000493455 AKT1S1Q96B36 256 aa20.2■□□□□ 0.82
HPS4-216ENST00000493455 CHMP4AQ9BY43 222 aa20.2■□□□□ 0.82
HPS4-216ENST00000493455 DDX21Q9NR30 783 aaKnown RBP eCLIP20.2■□□□□ 0.82
HPS4-216ENST00000493455 CACNA1FO60840 1977 aa20.2■□□□□ 0.82
HPS4-216ENST00000493455 RPS6KA4O75676 772 aa20.19■□□□□ 0.82
HPS4-216ENST00000493455 PDIA6Q15084 440 aa20.19■□□□□ 0.82
HPS4-216ENST00000493455 SLC15A2Q16348 729 aa20.19■□□□□ 0.82
HPS4-216ENST00000493455 AMIGO3Q86WK7 504 aa20.19■□□□□ 0.82
HPS4-216ENST00000493455 SSH1Q8WYL5 1049 aa20.19■□□□□ 0.82
HPS4-216ENST00000493455 PHAXQ9H814 394 aaKnown RBP20.19■□□□□ 0.82
HPS4-216ENST00000493455 ERBB4Q15303 1308 aa20.19■□□□□ 0.82
HPS4-216ENST00000493455 COL15A1P39059 1388 aa20.19■□□□□ 0.82
HPS4-216ENST00000493455 C4AP0C0L4 1744 aa20.19■□□□□ 0.82
HPS4-216ENST00000493455 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.17■□□□□ 0.82
HPS4-216ENST00000493455 IL6STP40189 918 aaPredicted RBP20.17■□□□□ 0.82
HPS4-216ENST00000493455 RARSP54136 660 aaKnown RBP20.17■□□□□ 0.82
HPS4-216ENST00000493455 G2E3Q7L622 706 aa20.17■□□□□ 0.82
HPS4-216ENST00000493455 XAGE3Q8WTP9 111 aa20.17■□□□□ 0.82
HPS4-216ENST00000493455 HYPKQ9NX55 129 aa20.17■□□□□ 0.82
HPS4-216ENST00000493455 TBC1D2BQ9UPU7 963 aa20.17■□□□□ 0.82
HPS4-216ENST00000493455 BCAR3O75815 825 aa20.16■□□□□ 0.82
HPS4-216ENST00000493455 TRAPPC3LQ5T215 181 aa20.16■□□□□ 0.82
HPS4-216ENST00000493455 MRPL50Q8N5N7 158 aaKnown RBP20.16■□□□□ 0.82
HPS4-216ENST00000493455 RCAN3Q9UKA8 241 aa20.16■□□□□ 0.82
HPS4-216ENST00000493455 PSDA5PKW4 1024 aaPredicted RBP20.15■□□□□ 0.82
HPS4-216ENST00000493455 EIF5P55010 431 aaKnown RBP20.15■□□□□ 0.82
HPS4-216ENST00000493455 R3HDM1Q15032 1099 aaKnown RBP20.15■□□□□ 0.82
HPS4-216ENST00000493455 ALDH1L2Q3SY69 923 aa20.15■□□□□ 0.82
HPS4-216ENST00000493455 TTLL7Q6ZT98 887 aa20.15■□□□□ 0.82
HPS4-216ENST00000493455 COPS6Q7L5N1 327 aa20.15■□□□□ 0.82
HPS4-216ENST00000493455 DZIP3Q86Y13 1208 aaKnown RBP20.15■□□□□ 0.82
HPS4-216ENST00000493455 ZNF428Q96B54 188 aa20.15■□□□□ 0.82
HPS4-216ENST00000493455 QSER1Q2KHR3 1735 aa20.15■□□□□ 0.82
HPS4-216ENST00000493455 PNPLA7Q6ZV29 1317 aa20.14■□□□□ 0.81
HPS4-216ENST00000493455 SSFA2P28290 1259 aa20.14■□□□□ 0.81
HPS4-216ENST00000493455 RFC4P35249 363 aa20.14■□□□□ 0.81
HPS4-216ENST00000493455 KIF6Q6ZMV9 814 aa20.14■□□□□ 0.81
HPS4-216ENST00000493455 FRAT1Q92837 279 aaPredicted RBP20.14■□□□□ 0.81
HPS4-216ENST00000493455 ARHGEF1Q92888 912 aaKnown RBP20.14■□□□□ 0.81
HPS4-216ENST00000493455 ZBTB3Q9H5J0 574 aa20.14■□□□□ 0.81
HPS4-216ENST00000493455 A0A087WZG4 1122 aa20.13■□□□□ 0.81
HPS4-216ENST00000493455 FLIIQ13045 1269 aa20.13■□□□□ 0.81
HPS4-216ENST00000493455 FKBP5Q13451 457 aaPredicted RBP20.13■□□□□ 0.81
HPS4-216ENST00000493455 SRP68Q9UHB9 627 aaKnown RBP20.13■□□□□ 0.81
HPS4-216ENST00000493455 ZPR1O75312 459 aa20.12■□□□□ 0.81
HPS4-216ENST00000493455 COL23A1Q86Y22 540 aaPredicted RBP20.12■□□□□ 0.81
HPS4-216ENST00000493455 BCORQ6W2J9 1755 aa20.12■□□□□ 0.81
HPS4-216ENST00000493455 ARFGEF2Q9Y6D5 1785 aa20.11■□□□□ 0.81
HPS4-216ENST00000493455 SCN7AQ01118 1682 aa20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms